Wall clock time and date at job start Tue Mar 31 2020 17:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99466 * 2 1 4 4 C 1.54323 * 109.88341 * 121.09934 * 2 1 3 5 5 H 1.09009 * 110.71794 * 215.58742 * 4 2 1 6 6 N 1.46500 * 110.72114 * 338.85970 * 4 2 1 7 7 C 1.36932 * 119.99902 * 205.00459 * 6 4 2 8 8 H 1.07995 * 120.00627 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00070 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00386 * 179.97438 * 9 7 6 11 11 Si 1.86809 * 119.99735 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46989 * 89.99819 * 11 9 7 13 13 H 1.48499 * 109.46673 * 209.99834 * 11 9 7 14 14 H 1.48500 * 109.46668 * 330.00006 * 11 9 7 15 15 C 1.55151 * 102.94389 * 97.22454 * 4 2 1 16 16 C 1.54912 * 101.58315 * 35.50169 * 15 4 2 17 17 N 1.47026 * 109.88358 * 238.90696 * 2 1 3 18 18 C 1.34776 * 125.64588 * 59.48241 * 17 2 1 19 19 O 1.21287 * 120.00290 * 355.43904 * 18 17 2 20 20 C 1.50699 * 119.99735 * 175.43649 * 18 17 2 21 21 H 1.08995 * 109.70626 * 315.93803 * 20 18 17 22 22 C 1.53467 * 109.70919 * 76.52200 * 20 18 17 23 23 O 1.43176 * 108.24101 * 179.41978 * 22 20 18 24 24 C 1.36112 * 116.70413 * 313.76859 * 23 22 20 25 25 C 1.38708 * 119.39617 * 197.26051 * 24 23 22 26 26 C 1.38195 * 120.06168 * 180.11219 * 25 24 23 27 27 C 1.38247 * 120.11668 * 0.05170 * 26 25 24 28 28 C 1.38195 * 120.11433 * 359.90268 * 27 26 25 29 29 C 1.38712 * 120.06538 * 359.97438 * 28 27 26 30 30 O 1.36101 * 119.39727 * 180.32627 * 29 28 27 31 31 H 1.09001 * 109.47090 * 179.64342 * 1 2 3 32 32 H 1.09001 * 109.47470 * 299.63747 * 1 2 3 33 33 H 1.08994 * 109.47393 * 59.64001 * 1 2 3 34 34 H 0.97003 * 119.99909 * 24.99925 * 6 4 2 35 35 H 0.96998 * 120.00054 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00610 * 277.42631 * 15 4 2 37 37 H 1.09006 * 111.03599 * 153.58859 * 15 4 2 38 38 H 1.08997 * 110.36988 * 204.15148 * 16 15 4 39 39 H 1.09001 * 110.36964 * 81.82794 * 16 15 4 40 40 H 1.08999 * 109.71066 * 299.10539 * 22 20 18 41 41 H 1.09005 * 109.71099 * 59.68836 * 22 20 18 42 42 H 1.07997 * 119.96579 * 0.12854 * 25 24 23 43 43 H 1.08004 * 119.94185 * 180.02562 * 26 25 24 44 44 H 1.08006 * 119.94540 * 179.97438 * 27 26 25 45 45 H 1.07998 * 119.97180 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 2.9657 -0.2832 1.6182 6 7 1.0293 -0.8027 2.2875 7 6 1.3954 -0.9389 3.5999 8 1 2.4401 -1.0075 3.8648 9 6 0.4237 -0.9887 4.5900 10 7 0.7756 -1.1200 5.8515 11 14 -1.3834 -0.8693 4.1320 12 1 -1.9216 -2.2305 3.8821 13 1 -2.1353 -0.2362 5.2451 14 1 -1.5295 -0.0462 2.9046 15 6 2.3519 -2.1695 0.6923 16 6 2.8568 -1.8498 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7742 -0.3852 -2.4657 19 8 1.0106 0.5227 -2.7181 20 6 2.4369 -1.1456 -3.5853 21 1 3.4921 -1.2928 -3.3555 22 6 1.7512 -2.5070 -3.7632 23 8 2.3950 -3.1957 -4.8408 24 6 2.6246 -2.4786 -5.9746 25 6 2.9024 -3.1465 -7.1581 26 6 3.1400 -2.4320 -8.3169 27 6 3.1025 -1.0501 -8.2998 28 6 2.8254 -0.3785 -7.1243 29 6 2.5835 -1.0896 -5.9581 30 8 2.3054 -0.4145 -4.8095 31 1 -0.3633 -1.0277 -0.0064 32 1 -0.3634 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0909 -0.7414 2.0496 35 1 0.0966 -1.1545 6.5433 36 1 1.4452 -2.7737 0.6603 37 1 3.1269 -2.6624 1.2793 38 1 2.7088 -2.7079 -1.3924 39 1 3.9091 -1.5666 -0.7130 40 1 1.8459 -3.0889 -2.8464 41 1 0.6969 -2.3598 -3.9978 42 1 2.9328 -4.2259 -7.1740 43 1 3.3557 -2.9540 -9.2375 44 1 3.2890 -0.4945 -9.2070 45 1 2.7964 0.7010 -7.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075085411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:50 Heat of formation + Delta-G solvation = -62.048652 kcal Electronic energy + Delta-G solvation = -28849.600699 eV Core-core repulsion = 24833.193723 eV Total energy + Delta-G solvation = -4016.406976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.63386 -41.31171 -39.27856 -38.56003 -38.20468 -36.14666 -33.95499 -32.76190 -32.12175 -31.66299 -30.97462 -29.50270 -27.06660 -26.47980 -25.10520 -24.09402 -23.78856 -22.38651 -21.22637 -20.33759 -19.91793 -19.85285 -19.00501 -18.24160 -17.58943 -17.24902 -16.86827 -16.64372 -16.14491 -16.12250 -15.83218 -15.66430 -15.43466 -15.16996 -14.99829 -14.85085 -14.71907 -14.46313 -14.02246 -13.71049 -13.50497 -13.32606 -13.18628 -13.00613 -12.88003 -12.84978 -12.66090 -12.41826 -12.30344 -12.17335 -11.95951 -11.74025 -11.68793 -11.58576 -10.99895 -10.94026 -9.87542 -9.68405 -9.33605 -9.15993 -8.02574 -5.36246 0.27074 0.27820 1.08191 1.28878 1.36942 1.38069 1.45270 1.94168 2.31708 2.46621 2.71547 2.96021 3.10339 3.27765 3.50506 3.50898 3.54204 3.64185 3.73168 3.94518 4.06646 4.10920 4.19442 4.27286 4.29537 4.32345 4.40804 4.43714 4.50599 4.54663 4.69577 4.77369 4.82828 4.96182 5.09663 5.14180 5.16333 5.20825 5.23071 5.41544 5.50290 5.67308 5.76475 5.78512 6.21069 6.25687 6.29886 6.82562 7.06440 7.81351 7.98961 9.18273 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.002527 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.220129 B =11078.512473 C =11323.601214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.073 0.927 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.745 5.745 7 C -0.225 4.225 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.939 3.061 12 H -0.278 1.278 13 H -0.299 1.299 14 H -0.254 1.254 15 C -0.145 4.145 16 C 0.093 3.907 17 N -0.599 5.599 18 C 0.540 3.460 19 O -0.556 6.556 20 C 0.045 3.955 21 H 0.130 0.870 22 C 0.037 3.963 23 O -0.303 6.303 24 C 0.024 3.976 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.109 4.109 28 C -0.127 4.127 29 C 0.025 3.975 30 O -0.308 6.308 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -5.438 -30.007 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.091 0.909 4 C 0.061 3.939 5 H 0.092 0.908 6 N -0.389 5.389 7 C -0.356 4.356 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.225 1.225 14 H -0.179 1.179 15 C -0.185 4.185 16 C -0.029 4.029 17 N -0.334 5.334 18 C 0.327 3.673 19 O -0.434 6.434 20 C -0.015 4.015 21 H 0.147 0.853 22 C -0.039 4.039 23 O -0.218 6.218 24 C -0.020 4.020 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.145 4.145 29 C -0.019 4.019 30 O -0.223 6.223 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.206 0.794 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.173 0.827 41 H 0.093 0.907 42 H 0.170 0.830 43 H 0.184 0.816 44 H 0.180 0.820 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.690 -4.941 -29.962 31.095 hybrid contribution -1.383 0.449 0.956 1.740 sum 5.307 -4.492 -29.006 29.828 Atomic orbital electron populations 1.22021 0.95499 1.02246 1.02009 1.21719 0.94662 0.96079 0.84593 0.90914 1.21355 0.91894 0.94632 0.86036 0.90770 1.42938 1.04624 1.88872 1.02505 1.19034 0.93655 1.40088 0.82809 0.91474 1.25372 1.01690 1.02933 0.95036 1.69850 1.33766 1.59259 1.00118 0.85673 0.81676 0.78320 0.77648 1.20377 1.22546 1.17910 1.23371 1.02302 0.98371 0.94467 1.22804 0.95787 0.88244 0.96026 1.48423 1.50305 1.31158 1.03505 1.19579 0.81576 0.83865 0.82325 1.90722 1.36869 1.32310 1.83453 1.22892 1.02695 0.92410 0.83513 0.85281 1.23669 0.96401 0.91869 0.91973 1.86336 1.76012 1.37705 1.21701 1.19273 1.04896 0.89051 0.88803 1.20824 1.02055 1.01612 0.89094 1.21385 0.99081 0.94022 0.98270 1.21337 0.98990 0.94892 0.97464 1.20760 1.02185 1.01022 0.90576 1.19346 1.04736 0.90278 0.87577 1.86334 1.85396 1.38326 1.12235 0.92143 0.91991 0.92013 0.79403 0.93409 0.91118 0.89042 0.87820 0.88250 0.82660 0.90683 0.83035 0.81611 0.81976 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 7.92 71.98 0.57 -4.65 16 2 C 0.13 4.07 3.51 45.34 0.16 4.23 16 3 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 4 C 0.17 5.62 3.48 46.18 0.16 5.78 16 5 H 0.07 2.51 8.09 -2.38 -0.02 2.49 16 6 N -0.74 -31.85 4.74 -317.33 -1.51 -33.35 16 7 C -0.22 -11.94 10.44 84.04 0.88 -11.06 16 8 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 9 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 10 N -0.98 -60.82 13.97 21.65 0.30 -60.52 16 11 Si 0.94 44.19 27.74 68.60 1.90 46.09 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 14 H -0.25 -10.91 6.48 99.48 0.64 -10.26 16 15 C -0.14 -3.67 6.77 31.98 0.22 -3.46 16 16 C 0.09 1.68 6.48 86.86 0.56 2.24 16 17 N -0.60 -14.95 3.08 -788.04 -2.43 -17.38 16 18 C 0.54 14.96 6.97 87.66 0.61 15.57 16 19 O -0.56 -20.34 15.33 15.36 0.24 -20.10 16 20 C 0.04 1.00 2.77 30.00 0.08 1.09 16 21 H 0.13 2.27 7.92 -2.39 -0.02 2.25 16 22 C 0.04 0.69 6.41 72.14 0.46 1.15 16 23 O -0.30 -6.15 10.42 -82.59 -0.86 -7.01 16 24 C 0.02 0.51 6.49 22.56 0.15 0.65 16 25 C -0.12 -1.79 9.96 22.37 0.22 -1.57 16 26 C -0.11 -1.23 10.04 22.26 0.22 -1.00 16 27 C -0.11 -1.36 10.04 22.26 0.22 -1.13 16 28 C -0.13 -2.38 9.96 22.37 0.22 -2.15 16 29 C 0.03 0.59 6.49 22.56 0.15 0.73 16 30 O -0.31 -8.47 9.66 -69.13 -0.67 -9.14 16 31 H 0.06 1.89 8.01 -2.39 -0.02 1.87 16 32 H 0.06 2.19 6.78 -2.39 -0.02 2.17 16 33 H 0.06 2.10 6.61 -2.39 -0.02 2.08 16 34 H 0.37 15.59 2.92 -92.71 -0.27 15.32 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.10 1.26 5.46 -2.39 -0.01 1.25 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.16 1.99 5.82 -2.39 -0.01 1.98 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -74.03 359.80 3.02 -71.01 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.69 Total: 26.83 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.36 Total: 3.57 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -3.63 Total: -111.25 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.29 Total: -36.25 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Total: -74.03 3.02 -71.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075085411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds