Wall clock time and date at job start Tue Mar 31 2020 16:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00405 * 2 1 4 4 O 1.42893 * 109.47204 * 135.00218 * 3 2 1 5 5 C 1.35708 * 117.00418 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91455 * 180.02562 * 5 4 3 7 7 C 1.37703 * 120.08929 * 180.02562 * 6 5 4 8 8 C 1.39737 * 119.91036 * 359.97438 * 7 6 5 9 9 C 1.47596 * 120.08777 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00422 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00047 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.78106 * 31.75673 * 12 11 9 14 14 C 1.54338 * 110.84944 * 268.69074 * 12 11 9 15 15 N 1.47018 * 107.26330 * 219.67128 * 14 12 11 16 16 C 1.36941 * 125.65050 * 178.84438 * 15 14 12 17 17 H 1.07997 * 119.99520 * 344.55999 * 16 15 14 18 18 C 1.38815 * 120.00466 * 164.54582 * 16 15 14 19 19 N 1.31616 * 119.99663 * 350.14935 * 18 16 15 20 20 Si 1.86793 * 119.99813 * 170.14110 * 18 16 15 21 21 H 1.48500 * 109.46844 * 84.95782 * 20 18 16 22 22 H 1.48495 * 109.47658 * 324.95890 * 20 18 16 23 23 H 1.48501 * 109.47287 * 204.95398 * 20 18 16 24 24 C 1.47423 * 108.70638 * 358.58593 * 15 14 12 25 25 C 1.54911 * 104.83220 * 24.35646 * 24 15 14 26 26 H 1.08996 * 111.00442 * 81.06444 * 25 24 15 27 27 O 1.42896 * 111.00394 * 204.91792 * 25 24 15 28 28 C 1.39735 * 119.82156 * 0.27960 * 8 7 6 29 29 C 1.37702 * 119.91257 * 359.41992 * 28 8 7 30 30 H 1.07999 * 120.00028 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99799 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99735 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46482 * 15.00898 * 3 2 1 34 34 H 1.08998 * 109.47321 * 255.00942 * 3 2 1 35 35 H 1.08001 * 119.95516 * 359.97129 * 6 5 4 36 36 H 1.07997 * 120.04570 * 180.02562 * 7 6 5 37 37 H 0.96996 * 119.99653 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.99025 * 100.20036 * 14 12 11 39 39 H 1.08995 * 109.77970 * 339.02672 * 14 12 11 40 40 H 0.97006 * 119.99781 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.37222 * 143.19231 * 24 15 14 42 42 H 1.08997 * 110.37061 * 265.40545 * 24 15 14 43 43 H 0.96694 * 114.00306 * 298.54134 * 27 25 24 44 44 H 1.08005 * 120.03788 * 179.72087 * 28 8 7 45 45 H 1.07996 * 119.95444 * 180.27686 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9082 2.3435 1.0787 6 6 4.9602 2.3472 1.9871 7 6 5.7550 3.4640 2.1185 8 6 5.5030 4.5944 1.3366 9 6 6.3528 5.7934 1.4737 10 8 7.2732 5.7986 2.2682 11 7 6.1079 6.8830 0.7191 12 6 6.9517 8.0728 0.8548 13 1 7.9725 7.7950 1.1175 14 6 6.3683 9.0432 1.9036 15 7 6.5516 10.4069 1.3858 16 6 6.1476 11.5579 2.0081 17 1 5.4393 11.5116 2.8221 18 6 6.6485 12.7841 1.5929 19 7 7.6497 12.8311 0.7398 20 14 5.9017 14.3673 2.2448 21 1 6.5288 14.7112 3.5462 22 1 4.4400 14.1845 2.4327 23 1 6.1425 15.4648 1.2739 24 6 7.2479 10.3305 0.0886 25 6 6.9297 8.9131 -0.4493 26 1 5.9452 8.8843 -0.9161 27 8 7.9391 8.4723 -1.3597 28 6 4.4411 4.5886 0.4283 29 6 3.6548 3.4656 0.2985 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2662 34 1 2.4755 1.4868 -0.9927 35 1 5.1540 1.4733 2.5914 36 1 6.5724 3.4660 2.8242 37 1 5.3734 6.8789 0.0856 38 1 6.8979 8.9317 2.8498 39 1 5.3068 8.8396 2.0443 40 1 7.9995 13.6880 0.4493 41 1 6.8646 11.0898 -0.5931 42 1 8.3220 10.4534 0.2268 43 1 8.0287 9.0273 -2.1465 44 1 4.2405 5.4620 -0.1745 45 1 2.8367 3.4588 -0.4065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077245071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:18 Heat of formation + Delta-G solvation = -41.263686 kcal Electronic energy + Delta-G solvation = -27402.216779 eV Core-core repulsion = 23386.711107 eV Total energy + Delta-G solvation = -4015.505672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.68164 -39.65790 -38.10031 -37.17460 -35.09856 -34.57336 -34.10308 -31.93928 -31.25519 -30.41876 -28.35819 -27.32320 -26.81488 -24.57211 -23.47840 -22.81087 -20.85310 -20.62876 -20.34313 -19.99213 -18.69586 -17.73373 -17.08047 -16.80432 -16.66867 -16.29007 -15.61839 -15.18759 -14.98399 -14.70312 -14.61560 -14.27304 -13.89002 -13.81595 -13.70456 -13.44135 -13.18787 -12.87809 -12.85243 -12.55574 -12.35862 -12.05635 -11.68628 -11.53159 -11.48279 -11.24330 -11.14472 -10.95793 -10.84381 -10.21762 -10.05958 -9.98472 -9.86772 -9.82539 -9.36667 -9.34856 -8.82286 -8.67139 -8.47399 -6.86110 -5.82979 -3.18748 0.74224 1.06640 1.51622 2.86948 2.88862 3.29663 3.36751 3.41911 3.43736 3.75781 4.23987 4.38713 4.43052 4.45935 4.56842 4.58265 4.72009 4.76864 4.87360 5.00274 5.12788 5.23202 5.28550 5.36884 5.38807 5.57988 5.63154 5.67274 5.82562 5.84664 5.94839 5.97778 6.04425 6.07365 6.12422 6.18727 6.38678 6.47375 6.70129 6.92231 6.99294 7.17024 7.43649 7.67181 7.70407 8.05441 8.17050 8.40375 9.09303 9.71147 10.38079 11.30255 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002126 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.716429 B =13167.980162 C =13593.897711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.309 6.309 5 C 0.151 3.849 6 C -0.160 4.160 7 C -0.019 4.019 8 C -0.166 4.166 9 C 0.560 3.440 10 O -0.538 6.538 11 N -0.710 5.710 12 C 0.143 3.857 13 H 0.104 0.896 14 C 0.128 3.872 15 N -0.597 5.597 16 C -0.234 4.234 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.286 1.286 22 H -0.281 1.281 23 H -0.289 1.289 24 C 0.151 3.849 25 C 0.066 3.934 26 H 0.061 0.939 27 O -0.564 6.564 28 C -0.043 4.043 29 C -0.218 4.218 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.396 0.604 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -23.350 -5.834 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.010 3.990 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.179 4.179 7 C -0.038 4.038 8 C -0.169 4.169 9 C 0.347 3.653 10 O -0.416 6.416 11 N -0.361 5.361 12 C 0.038 3.962 13 H 0.122 0.878 14 C 0.001 3.999 15 N -0.324 5.324 16 C -0.362 4.362 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.562 5.562 20 Si 0.743 3.257 21 H -0.213 1.213 22 H -0.206 1.206 23 H -0.215 1.215 24 C 0.025 3.975 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.369 6.369 28 C -0.062 4.062 29 C -0.237 4.237 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.231 0.769 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.224 0.776 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.214 -23.758 -4.740 26.696 hybrid contribution -0.926 1.509 -0.626 1.878 sum -12.140 -22.249 -5.366 25.908 Atomic orbital electron populations 1.23918 0.95423 1.02718 0.98577 1.22658 0.95667 0.97727 1.01532 1.21893 0.87830 0.97066 0.92248 1.86052 1.42003 1.35709 1.58453 1.19239 0.90546 0.85653 0.94113 1.20402 0.95998 1.00226 1.01226 1.21118 0.96992 0.90103 0.95612 1.19938 0.99247 0.95904 1.01846 1.18113 0.83916 0.82594 0.80635 1.90785 1.31255 1.82990 1.36566 1.45867 1.34314 1.14113 1.41795 1.22001 0.95671 0.83537 0.94982 0.87787 1.21675 0.97720 0.85445 0.95021 1.44253 1.69185 1.00103 1.18904 1.18989 1.19384 0.82861 1.14947 0.90519 1.24927 0.97196 0.97998 1.00016 1.69934 1.25661 1.24386 1.36203 0.86135 0.78684 0.82820 0.78070 1.21309 1.20625 1.21546 1.21957 0.97362 0.90246 0.87927 1.23587 0.90162 0.96888 0.88796 0.92143 1.86434 1.58883 1.55949 1.35608 1.21120 0.92449 0.97395 0.95238 1.21146 1.04142 0.94134 1.04235 0.87349 0.88128 0.86177 0.91151 0.90716 0.84488 0.83747 0.76910 0.94678 0.95193 0.93518 0.91650 0.93689 0.77579 0.85198 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 14.31 29.01 0.42 -0.34 16 2 C -0.16 -0.89 9.89 -36.03 -0.36 -1.25 16 3 C 0.08 0.54 5.15 36.01 0.19 0.73 16 4 O -0.31 -2.86 10.11 -18.83 -0.19 -3.05 16 5 C 0.15 1.50 6.70 -39.02 -0.26 1.24 16 6 C -0.16 -1.64 9.97 -39.50 -0.39 -2.04 16 7 C -0.02 -0.23 9.58 -39.22 -0.38 -0.61 16 8 C -0.17 -2.14 5.87 -104.96 -0.62 -2.76 16 9 C 0.56 9.11 7.76 -12.44 -0.10 9.02 16 10 O -0.54 -10.74 15.99 5.29 0.08 -10.66 16 11 N -0.71 -11.01 5.06 -53.04 -0.27 -11.28 16 12 C 0.14 2.72 3.04 -66.09 -0.20 2.52 16 13 H 0.10 2.23 7.55 -51.93 -0.39 1.84 16 14 C 0.13 2.81 7.01 -3.06 -0.02 2.78 16 15 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 16 C -0.23 -6.47 10.21 -15.06 -0.15 -6.63 16 17 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 18 C 0.00 -0.11 5.38 -17.43 -0.09 -0.20 16 19 N -0.92 -26.45 10.92 55.49 0.61 -25.84 16 20 Si 0.91 21.76 29.56 -169.99 -5.03 16.73 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.15 3.53 5.10 -2.53 -0.01 3.52 16 25 C 0.07 1.21 4.06 -24.58 -0.10 1.11 16 26 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 27 O -0.56 -9.54 13.47 -35.23 -0.47 -10.01 16 28 C -0.04 -0.44 9.53 -39.22 -0.37 -0.82 16 29 C -0.22 -1.98 9.01 -39.50 -0.36 -2.33 16 30 H 0.11 0.35 8.06 -52.49 -0.42 -0.07 16 31 H 0.10 0.38 7.90 -52.49 -0.41 -0.04 16 32 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.07 0.39 7.37 -51.93 -0.38 0.01 16 34 H 0.07 0.40 7.65 -51.93 -0.40 0.00 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.70 7.64 -52.49 -0.40 1.30 16 37 H 0.40 4.92 6.58 -40.82 -0.27 4.65 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.07 1.63 7.31 -51.93 -0.38 1.25 16 42 H 0.05 1.18 7.95 -51.93 -0.41 0.77 16 43 H 0.38 4.81 9.11 45.56 0.42 5.23 16 44 H 0.13 1.07 6.39 -52.48 -0.34 0.73 16 45 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -34.16 378.64 -8.32 -42.48 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.37 Total: 7.73 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.81 Total: 3.95 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.24 Total: -52.88 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.58 Total: -23.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.16 -8.32 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077245071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.221 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds