Wall clock time and date at job start Tue Mar 31 2020 16:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00405 * 2 1 4 4 O 1.42893 * 109.47204 * 135.00218 * 3 2 1 5 5 C 1.35708 * 117.00418 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91455 * 180.02562 * 5 4 3 7 7 C 1.37703 * 120.08929 * 180.02562 * 6 5 4 8 8 C 1.39737 * 119.91036 * 359.97438 * 7 6 5 9 9 C 1.47596 * 120.08777 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00422 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00047 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.78106 * 31.75673 * 12 11 9 14 14 C 1.54338 * 110.84944 * 268.69074 * 12 11 9 15 15 N 1.47018 * 107.26330 * 219.67128 * 14 12 11 16 16 C 1.36941 * 125.65050 * 178.84438 * 15 14 12 17 17 H 1.07997 * 119.99520 * 344.55999 * 16 15 14 18 18 C 1.38815 * 120.00466 * 164.54582 * 16 15 14 19 19 N 1.31616 * 119.99663 * 350.14935 * 18 16 15 20 20 Si 1.86793 * 119.99813 * 170.14110 * 18 16 15 21 21 H 1.48500 * 109.46844 * 84.95782 * 20 18 16 22 22 H 1.48495 * 109.47658 * 324.95890 * 20 18 16 23 23 H 1.48501 * 109.47287 * 204.95398 * 20 18 16 24 24 C 1.47423 * 108.70638 * 358.58593 * 15 14 12 25 25 C 1.54911 * 104.83220 * 24.35646 * 24 15 14 26 26 H 1.08996 * 111.00442 * 81.06444 * 25 24 15 27 27 O 1.42896 * 111.00394 * 204.91792 * 25 24 15 28 28 C 1.39735 * 119.82156 * 0.27960 * 8 7 6 29 29 C 1.37702 * 119.91257 * 359.41992 * 28 8 7 30 30 H 1.07999 * 120.00028 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99799 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99735 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46482 * 15.00898 * 3 2 1 34 34 H 1.08998 * 109.47321 * 255.00942 * 3 2 1 35 35 H 1.08001 * 119.95516 * 359.97129 * 6 5 4 36 36 H 1.07997 * 120.04570 * 180.02562 * 7 6 5 37 37 H 0.96996 * 119.99653 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.99025 * 100.20036 * 14 12 11 39 39 H 1.08995 * 109.77970 * 339.02672 * 14 12 11 40 40 H 0.97006 * 119.99781 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.37222 * 143.19231 * 24 15 14 42 42 H 1.08997 * 110.37061 * 265.40545 * 24 15 14 43 43 H 0.96694 * 114.00306 * 298.54134 * 27 25 24 44 44 H 1.08005 * 120.03788 * 179.72087 * 28 8 7 45 45 H 1.07996 * 119.95444 * 180.27686 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9082 2.3435 1.0787 6 6 4.9602 2.3472 1.9871 7 6 5.7550 3.4640 2.1185 8 6 5.5030 4.5944 1.3366 9 6 6.3528 5.7934 1.4737 10 8 7.2732 5.7986 2.2682 11 7 6.1079 6.8830 0.7191 12 6 6.9517 8.0728 0.8548 13 1 7.9725 7.7950 1.1175 14 6 6.3683 9.0432 1.9036 15 7 6.5516 10.4069 1.3858 16 6 6.1476 11.5579 2.0081 17 1 5.4393 11.5116 2.8221 18 6 6.6485 12.7841 1.5929 19 7 7.6497 12.8311 0.7398 20 14 5.9017 14.3673 2.2448 21 1 6.5288 14.7112 3.5462 22 1 4.4400 14.1845 2.4327 23 1 6.1425 15.4648 1.2739 24 6 7.2479 10.3305 0.0886 25 6 6.9297 8.9131 -0.4493 26 1 5.9452 8.8843 -0.9161 27 8 7.9391 8.4723 -1.3597 28 6 4.4411 4.5886 0.4283 29 6 3.6548 3.4656 0.2985 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2662 34 1 2.4755 1.4868 -0.9927 35 1 5.1540 1.4733 2.5914 36 1 6.5724 3.4660 2.8242 37 1 5.3734 6.8789 0.0856 38 1 6.8979 8.9317 2.8498 39 1 5.3068 8.8396 2.0443 40 1 7.9995 13.6880 0.4493 41 1 6.8646 11.0898 -0.5931 42 1 8.3220 10.4534 0.2268 43 1 8.0287 9.0273 -2.1465 44 1 4.2405 5.4620 -0.1745 45 1 2.8367 3.4588 -0.4065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077245071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:17 Heat of formation + Delta-G solvation = -66.402725 kcal Electronic energy + Delta-G solvation = -27403.306889 eV Core-core repulsion = 23386.711107 eV Total energy + Delta-G solvation = -4016.595783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.59457 -40.79312 -39.50731 -38.15363 -36.69290 -35.66608 -34.99411 -33.73801 -32.15386 -31.42728 -30.03713 -28.79691 -27.62098 -26.37493 -24.49473 -23.64854 -22.54939 -21.92640 -21.45290 -20.82716 -19.50997 -19.07726 -18.61780 -18.26657 -17.54211 -17.17603 -16.91217 -16.47856 -16.09724 -16.06980 -15.62236 -15.58897 -15.24873 -15.02767 -14.74874 -14.45189 -14.29099 -14.04359 -13.96319 -13.89697 -13.50008 -13.35160 -13.20073 -13.05044 -12.83862 -12.73124 -12.18961 -12.16410 -12.11741 -11.92475 -11.78034 -11.56100 -11.23964 -10.89596 -10.74272 -10.43462 -10.24216 -10.12690 -9.30502 -8.92223 -7.93874 -5.33206 -0.15783 0.29534 1.13499 1.46782 1.48350 1.57457 1.79173 2.00673 2.30849 2.46836 2.80727 3.04307 3.26500 3.58730 3.63996 3.68006 3.80826 3.87204 3.95087 4.04218 4.10443 4.15426 4.16485 4.31076 4.38889 4.42026 4.53856 4.54349 4.58762 4.83994 4.90930 4.93246 4.97543 5.07858 5.19146 5.24000 5.32972 5.41846 5.46568 5.56828 5.58765 5.63774 5.71143 6.11981 6.32153 6.49152 6.84644 7.00536 7.16949 7.65255 8.32050 9.17819 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002126 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.716429 B =13167.980162 C =13593.897711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.077 3.923 4 O -0.319 6.319 5 C 0.154 3.846 6 C -0.165 4.165 7 C -0.029 4.029 8 C -0.189 4.189 9 C 0.559 3.441 10 O -0.585 6.585 11 N -0.697 5.697 12 C 0.156 3.844 13 H 0.075 0.925 14 C 0.130 3.870 15 N -0.615 5.615 16 C -0.252 4.252 17 H 0.079 0.921 18 C -0.057 4.057 19 N -0.944 5.944 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.289 1.289 24 C 0.157 3.843 25 C 0.093 3.907 26 H 0.095 0.905 27 O -0.567 6.567 28 C -0.036 4.036 29 C -0.212 4.212 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.415 0.585 38 H 0.010 0.990 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.047 0.953 42 H 0.006 0.994 43 H 0.398 0.602 44 H 0.154 0.846 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.977 -24.555 -7.275 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.003 3.997 4 O -0.233 6.233 5 C 0.108 3.892 6 C -0.183 4.183 7 C -0.048 4.048 8 C -0.192 4.192 9 C 0.349 3.651 10 O -0.467 6.467 11 N -0.349 5.349 12 C 0.050 3.950 13 H 0.094 0.906 14 C 0.003 3.997 15 N -0.343 5.343 16 C -0.381 4.381 17 H 0.097 0.903 18 C -0.251 4.251 19 N -0.591 5.591 20 Si 0.809 3.191 21 H -0.213 1.213 22 H -0.192 1.192 23 H -0.215 1.215 24 C 0.031 3.969 25 C 0.032 3.968 26 H 0.112 0.888 27 O -0.375 6.375 28 C -0.054 4.054 29 C -0.230 4.230 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.248 0.752 44 H 0.171 0.829 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.229 -24.996 -6.220 29.427 hybrid contribution -0.058 1.745 -0.175 1.755 sum -14.287 -23.251 -6.395 28.029 Atomic orbital electron populations 1.24127 0.95117 1.03731 0.96717 1.22689 0.96124 0.97483 1.03249 1.22161 0.87372 0.97941 0.92252 1.86055 1.42521 1.35428 1.59264 1.19385 0.90128 0.86170 0.93561 1.20508 0.96050 1.00061 1.01724 1.21100 0.97297 0.90662 0.95705 1.19722 1.00512 0.94681 1.04295 1.18682 0.83540 0.83374 0.79535 1.90759 1.33462 1.83851 1.38584 1.45609 1.34322 1.12740 1.42187 1.21525 0.94676 0.84255 0.94592 0.90635 1.21715 0.98301 0.84764 0.94888 1.44526 1.68994 1.00863 1.19897 1.19357 1.19519 0.84055 1.15179 0.90322 1.25774 0.97710 1.01105 1.00533 1.70121 1.26846 1.24784 1.37378 0.85075 0.78420 0.78551 0.77087 1.21336 1.19206 1.21539 1.21787 0.94744 0.93152 0.87190 1.23230 0.91862 0.92869 0.88806 0.88779 1.86406 1.58596 1.56213 1.36287 1.21340 0.91179 0.98640 0.94252 1.21449 1.04396 0.93047 1.04122 0.86274 0.87240 0.86406 0.89898 0.89427 0.83234 0.84806 0.74681 0.97173 0.93650 0.93914 0.93505 0.97595 0.75206 0.82858 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 14.31 67.78 0.97 -0.04 16 2 C -0.18 -1.59 9.89 25.65 0.25 -1.34 16 3 C 0.08 0.75 5.15 71.24 0.37 1.12 16 4 O -0.32 -5.13 10.11 -90.29 -0.91 -6.04 16 5 C 0.15 2.69 6.70 22.63 0.15 2.84 16 6 C -0.16 -3.20 9.97 22.32 0.22 -2.97 16 7 C -0.03 -0.68 9.58 22.51 0.22 -0.46 16 8 C -0.19 -4.68 5.87 -20.08 -0.12 -4.80 16 9 C 0.56 18.16 7.76 86.71 0.67 18.83 16 10 O -0.59 -24.30 15.99 -3.99 -0.06 -24.37 16 11 N -0.70 -20.78 5.06 -439.98 -2.23 -23.00 16 12 C 0.16 5.94 3.04 46.19 0.14 6.09 16 13 H 0.08 3.36 7.55 -2.38 -0.02 3.34 16 14 C 0.13 5.77 7.01 86.73 0.61 6.38 16 15 N -0.61 -31.90 3.39 -691.97 -2.35 -34.24 16 16 C -0.25 -14.17 10.21 84.03 0.86 -13.31 16 17 H 0.08 4.27 7.85 -2.91 -0.02 4.24 16 18 C -0.06 -3.20 5.38 84.86 0.46 -2.74 16 19 N -0.94 -55.80 10.92 21.65 0.24 -55.56 16 20 Si 0.98 44.96 29.56 68.60 2.03 46.99 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.16 7.51 5.10 86.86 0.44 7.95 16 25 C 0.09 3.31 4.06 31.99 0.13 3.44 16 26 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 27 O -0.57 -18.35 13.47 -148.98 -2.01 -20.35 16 28 C -0.04 -0.62 9.53 22.51 0.21 -0.41 16 29 C -0.21 -3.10 9.01 22.33 0.20 -2.89 16 30 H 0.12 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.11 0.48 7.90 -2.91 -0.02 0.46 16 32 H 0.12 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.08 0.60 7.37 -2.38 -0.02 0.59 16 34 H 0.09 0.63 7.65 -2.39 -0.02 0.61 16 35 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.13 3.34 7.64 -2.91 -0.02 3.32 16 37 H 0.41 9.09 6.58 -92.71 -0.61 8.48 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 40 H 0.25 14.38 8.31 -92.70 -0.77 13.60 16 41 H 0.05 2.38 7.31 -2.39 -0.02 2.36 16 42 H 0.01 0.33 7.95 -2.39 -0.02 0.31 16 43 H 0.40 9.39 9.11 -74.06 -0.67 8.71 16 44 H 0.15 1.88 6.39 -2.91 -0.02 1.86 16 45 H 0.16 1.34 6.28 -2.91 -0.02 1.32 16 Total: -1.00 -76.61 378.64 0.24 -76.37 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.26 Total: 22.53 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 5.79 Total: 17.68 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.33 Total: -112.80 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.98 Total: -50.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.61 0.24 -76.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077245071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.968 kcal (2) G-P(sol) polarization free energy of solvation -76.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds