Wall clock time and date at job start Tue Mar 31 2020 17:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.66930 * 2 1 4 4 C 1.54708 * 110.75774 * 236.76613 * 2 1 3 5 5 C 1.51670 * 101.90783 * 216.49066 * 4 2 1 6 6 C 1.37706 * 132.12338 * 195.60185 * 5 4 2 7 7 C 1.38605 * 120.31776 * 179.10225 * 6 5 4 8 8 C 1.37828 * 119.97555 * 359.75245 * 7 6 5 9 9 C 1.39485 * 120.18344 * 0.68947 * 8 7 6 10 10 C 1.47544 * 120.05539 * 179.76407 * 9 8 7 11 11 O 1.21580 * 120.00270 * 179.72389 * 10 9 8 12 12 N 1.34777 * 119.99340 * 359.72365 * 10 9 8 13 13 C 1.46501 * 119.99730 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.88395 * 37.43411 * 13 12 10 15 15 C 1.54910 * 111.00763 * 273.54930 * 13 12 10 16 16 N 1.47423 * 104.82934 * 204.87761 * 15 13 12 17 17 C 1.36943 * 125.64463 * 204.09154 * 16 15 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27811 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.47021 * 108.70520 * 24.35776 * 16 15 13 26 26 C 1.54331 * 107.26526 * 358.58242 * 25 16 15 27 27 H 1.08999 * 110.51339 * 96.45584 * 26 25 16 28 28 O 1.42904 * 111.00112 * 219.60481 * 26 25 16 29 29 C 1.38835 * 107.00175 * 15.13733 * 5 4 2 30 30 O 1.35860 * 111.30710 * 1.42233 * 29 5 4 31 31 H 1.08996 * 109.46520 * 183.23352 * 1 2 3 32 32 H 1.08999 * 109.47197 * 303.23159 * 1 2 3 33 33 H 1.08998 * 109.47001 * 63.23775 * 1 2 3 34 34 H 1.09004 * 110.94205 * 98.34148 * 4 2 1 35 35 H 1.09002 * 110.94100 * 334.64809 * 4 2 1 36 36 H 1.07992 * 119.83852 * 359.08049 * 6 5 4 37 37 H 1.07999 * 120.00787 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.90661 * 180.43891 * 8 7 6 39 39 H 0.96993 * 120.00181 * 0.02562 * 12 10 9 40 40 H 1.09000 * 110.36626 * 86.03818 * 15 13 12 41 41 H 1.08995 * 110.45617 * 323.76469 * 15 13 12 42 42 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.88257 * 118.13163 * 25 16 15 44 44 H 1.09008 * 109.88006 * 239.29375 * 25 16 15 45 45 H 0.96703 * 114.00037 * 293.78015 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0784 -0.7929 -1.2100 5 6 3.3049 -1.4597 -0.6174 6 6 4.3932 -2.0734 -1.1965 7 6 5.4047 -2.5958 -0.4059 8 6 5.3262 -2.4977 0.9666 9 6 4.2239 -1.8863 1.5641 10 6 4.1403 -1.7874 3.0338 11 8 3.1815 -1.2499 3.5534 12 7 5.1268 -2.2931 3.8003 13 6 5.0442 -2.1944 5.2597 14 1 4.0178 -2.3307 5.6008 15 6 5.6209 -0.8461 5.7587 16 7 6.0412 -1.1064 7.1476 17 6 6.1713 -0.1634 8.1321 18 1 5.9584 0.8736 7.9180 19 6 6.5827 -0.5396 9.4033 20 7 6.8426 -1.8032 9.6640 21 14 6.7675 0.7478 10.7442 22 1 6.4179 2.0842 10.1990 23 1 5.8601 0.4205 11.8732 24 1 8.1721 0.7624 11.2262 25 6 6.3039 -2.5450 7.2989 26 6 5.9965 -3.2120 5.9415 27 1 6.9105 -3.3342 5.3603 28 8 5.3443 -4.4702 6.1252 29 6 3.1948 -1.3589 0.7629 30 8 2.0396 -0.7407 1.1221 31 1 -0.3632 -1.0260 0.0580 32 1 -0.3633 0.5632 0.8596 33 1 -0.3633 0.4627 -0.9176 34 1 2.3545 -0.1213 -2.0230 35 1 1.3562 -1.5358 -1.5486 36 1 4.4587 -2.1482 -2.2719 37 1 6.2561 -3.0757 -0.8654 38 1 6.1183 -2.8988 1.5814 39 1 5.8919 -2.7216 3.3858 40 1 4.8533 -0.0725 5.7333 41 1 6.4769 -0.5501 5.1524 42 1 7.1297 -2.0660 10.5524 43 1 7.3488 -2.7051 7.5648 44 1 5.6551 -2.9612 8.0697 45 1 5.8970 -5.1418 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077408685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:20 Heat of formation + Delta-G solvation = -54.003005 kcal Electronic energy + Delta-G solvation = -28467.334708 eV Core-core repulsion = 24451.276617 eV Total energy + Delta-G solvation = -4016.058091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.48319 -39.53529 -37.93633 -37.31903 -35.03707 -34.00593 -33.38911 -31.90377 -31.21451 -30.45662 -28.30345 -27.02816 -26.83495 -24.64951 -23.43752 -22.27986 -21.92237 -20.67571 -20.40453 -19.92459 -17.86754 -17.57241 -17.02491 -16.80496 -16.57281 -15.84053 -15.53960 -15.18612 -14.69976 -14.57674 -14.18942 -14.02186 -13.78037 -13.55666 -13.46914 -13.16227 -12.96368 -12.67270 -12.65269 -12.43609 -12.29210 -12.08039 -11.95928 -11.72236 -11.44347 -11.29904 -11.21975 -10.99919 -10.85216 -10.80712 -10.10750 -9.86705 -9.81371 -9.70266 -9.27140 -9.17726 -8.76234 -8.59672 -8.35571 -6.88025 -5.73592 -3.07743 0.69101 1.07532 2.88035 3.02417 3.32491 3.41137 3.46870 3.49472 3.73520 4.06877 4.18488 4.45139 4.51571 4.63983 4.65784 4.74142 4.85929 4.88207 5.00128 5.12720 5.19510 5.24254 5.30042 5.46830 5.47289 5.50481 5.60707 5.69470 5.72494 5.79897 5.84734 5.93209 6.02518 6.11621 6.14992 6.18420 6.34181 6.58944 6.69274 6.93365 6.98958 7.35176 7.49858 7.73655 7.79494 8.14247 8.20368 8.50878 9.18224 9.78185 10.41505 11.38375 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002739 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.653347 B =10220.391392 C =11088.730841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.089 0.911 4 C -0.104 4.104 5 C -0.190 4.190 6 C -0.048 4.048 7 C -0.158 4.158 8 C -0.052 4.052 9 C -0.152 4.152 10 C 0.555 3.445 11 O -0.520 6.520 12 N -0.713 5.713 13 C 0.142 3.858 14 H 0.103 0.897 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.154 3.846 26 C 0.069 3.931 27 H 0.057 0.943 28 O -0.563 6.563 29 C 0.171 3.829 30 O -0.271 6.271 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.394 0.606 40 H 0.051 0.949 41 H 0.023 0.977 42 H 0.252 0.748 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -2.881 -25.584 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.107 0.893 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.066 4.066 7 C -0.176 4.176 8 C -0.071 4.071 9 C -0.156 4.156 10 C 0.342 3.658 11 O -0.397 6.397 12 N -0.364 5.364 13 C 0.036 3.964 14 H 0.121 0.879 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.028 3.972 26 C 0.009 3.991 27 H 0.074 0.926 28 O -0.367 6.367 29 C 0.123 3.877 30 O -0.183 6.183 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.229 0.771 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.822 -2.137 -25.023 25.780 hybrid contribution 1.147 0.088 0.666 1.329 sum -4.675 -2.049 -24.358 24.887 Atomic orbital electron populations 1.21868 0.91868 1.03667 1.03196 1.23500 0.96192 0.95697 0.83292 0.89318 1.21887 0.94461 0.99252 0.98489 1.20808 0.98490 1.06349 0.93450 1.20446 0.91569 0.94563 1.00049 1.20942 1.00069 1.03407 0.93183 1.21112 0.95476 0.95173 0.95343 1.19359 0.94956 1.08072 0.93164 1.18015 0.82865 0.78946 0.86005 1.90841 1.31918 1.42617 1.74290 1.45821 1.23408 1.60154 1.07061 1.22225 1.01260 0.95609 0.77268 0.87940 1.21850 0.96564 0.94208 0.87109 1.44261 1.79310 1.03750 1.05486 1.19151 1.38775 0.88697 0.88788 0.90084 1.24812 1.01565 0.96590 0.97507 1.69929 1.52225 1.14321 1.20746 0.85991 0.77279 0.80379 0.81817 1.20413 1.21670 1.21754 1.21815 1.00596 0.83978 0.90773 1.23445 0.93216 0.83706 0.98773 0.92550 1.86479 1.44207 1.22470 1.83583 1.19449 0.85756 0.90745 0.91770 1.87069 1.33150 1.61112 1.37006 0.91345 0.90964 0.90344 0.88966 0.88955 0.85446 0.84823 0.84709 0.77105 0.93042 0.95888 0.93736 0.93307 0.92069 0.77708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.59 37.16 0.36 -0.78 16 2 C 0.07 0.68 4.26 -25.83 -0.11 0.57 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.10 -0.81 6.65 -26.51 -0.18 -0.99 16 5 C -0.19 -1.99 6.27 -104.12 -0.65 -2.64 16 6 C -0.05 -0.41 10.02 -39.64 -0.40 -0.80 16 7 C -0.16 -1.33 10.05 -39.60 -0.40 -1.73 16 8 C -0.05 -0.55 9.51 -39.27 -0.37 -0.92 16 9 C -0.15 -2.17 5.89 -104.72 -0.62 -2.78 16 10 C 0.56 9.84 7.76 -12.47 -0.10 9.75 16 11 O -0.52 -11.45 15.61 -10.27 -0.16 -11.61 16 12 N -0.71 -11.58 5.18 -52.76 -0.27 -11.85 16 13 C 0.14 2.82 3.04 -65.78 -0.20 2.62 16 14 H 0.10 2.35 7.73 -51.92 -0.40 1.95 16 15 C 0.13 2.92 6.93 -2.53 -0.02 2.90 16 16 N -0.60 -15.78 3.39 -170.07 -0.58 -16.35 16 17 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 18 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.15 3.72 5.16 -3.06 -0.02 3.70 16 26 C 0.07 1.30 3.94 -24.89 -0.10 1.20 16 27 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 28 O -0.56 -9.95 13.40 -35.23 -0.47 -10.42 16 29 C 0.17 2.41 6.73 -38.44 -0.26 2.15 16 30 O -0.27 -4.08 9.84 -34.86 -0.34 -4.42 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.14 1.10 6.37 -52.49 -0.33 0.76 16 39 H 0.39 5.01 6.53 -40.82 -0.27 4.74 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 44 H 0.06 1.67 7.29 -51.92 -0.38 1.29 16 45 H 0.38 5.01 9.12 45.56 0.42 5.42 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -36.52 369.89 -9.54 -46.06 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.53 Total: 6.89 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.31 Total: 5.28 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.28 Total: -54.76 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.98 Total: -26.45 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.52 -9.54 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077408685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.939 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds