Wall clock time and date at job start Tue Mar 31 2020 17:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.66930 * 2 1 4 4 C 1.54708 * 110.75774 * 236.76613 * 2 1 3 5 5 C 1.51670 * 101.90783 * 216.49066 * 4 2 1 6 6 C 1.37706 * 132.12338 * 195.60185 * 5 4 2 7 7 C 1.38605 * 120.31776 * 179.10225 * 6 5 4 8 8 C 1.37828 * 119.97555 * 359.75245 * 7 6 5 9 9 C 1.39485 * 120.18344 * 0.68947 * 8 7 6 10 10 C 1.47544 * 120.05539 * 179.76407 * 9 8 7 11 11 O 1.21580 * 120.00270 * 179.72389 * 10 9 8 12 12 N 1.34777 * 119.99340 * 359.72365 * 10 9 8 13 13 C 1.46501 * 119.99730 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.88395 * 37.43411 * 13 12 10 15 15 C 1.54910 * 111.00763 * 273.54930 * 13 12 10 16 16 N 1.47423 * 104.82934 * 204.87761 * 15 13 12 17 17 C 1.36943 * 125.64463 * 204.09154 * 16 15 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27811 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.47021 * 108.70520 * 24.35776 * 16 15 13 26 26 C 1.54331 * 107.26526 * 358.58242 * 25 16 15 27 27 H 1.08999 * 110.51339 * 96.45584 * 26 25 16 28 28 O 1.42904 * 111.00112 * 219.60481 * 26 25 16 29 29 C 1.38835 * 107.00175 * 15.13733 * 5 4 2 30 30 O 1.35860 * 111.30710 * 1.42233 * 29 5 4 31 31 H 1.08996 * 109.46520 * 183.23352 * 1 2 3 32 32 H 1.08999 * 109.47197 * 303.23159 * 1 2 3 33 33 H 1.08998 * 109.47001 * 63.23775 * 1 2 3 34 34 H 1.09004 * 110.94205 * 98.34148 * 4 2 1 35 35 H 1.09002 * 110.94100 * 334.64809 * 4 2 1 36 36 H 1.07992 * 119.83852 * 359.08049 * 6 5 4 37 37 H 1.07999 * 120.00787 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.90661 * 180.43891 * 8 7 6 39 39 H 0.96993 * 120.00181 * 0.02562 * 12 10 9 40 40 H 1.09000 * 110.36626 * 86.03818 * 15 13 12 41 41 H 1.08995 * 110.45617 * 323.76469 * 15 13 12 42 42 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.88257 * 118.13163 * 25 16 15 44 44 H 1.09008 * 109.88006 * 239.29375 * 25 16 15 45 45 H 0.96703 * 114.00037 * 293.78015 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0784 -0.7929 -1.2100 5 6 3.3049 -1.4597 -0.6174 6 6 4.3932 -2.0734 -1.1965 7 6 5.4047 -2.5958 -0.4059 8 6 5.3262 -2.4977 0.9666 9 6 4.2239 -1.8863 1.5641 10 6 4.1403 -1.7874 3.0338 11 8 3.1815 -1.2499 3.5534 12 7 5.1268 -2.2931 3.8003 13 6 5.0442 -2.1944 5.2597 14 1 4.0178 -2.3307 5.6008 15 6 5.6209 -0.8461 5.7587 16 7 6.0412 -1.1064 7.1476 17 6 6.1713 -0.1634 8.1321 18 1 5.9584 0.8736 7.9180 19 6 6.5827 -0.5396 9.4033 20 7 6.8426 -1.8032 9.6640 21 14 6.7675 0.7478 10.7442 22 1 6.4179 2.0842 10.1990 23 1 5.8601 0.4205 11.8732 24 1 8.1721 0.7624 11.2262 25 6 6.3039 -2.5450 7.2989 26 6 5.9965 -3.2120 5.9415 27 1 6.9105 -3.3342 5.3603 28 8 5.3443 -4.4702 6.1252 29 6 3.1948 -1.3589 0.7629 30 8 2.0396 -0.7407 1.1221 31 1 -0.3632 -1.0260 0.0580 32 1 -0.3633 0.5632 0.8596 33 1 -0.3633 0.4627 -0.9176 34 1 2.3545 -0.1213 -2.0230 35 1 1.3562 -1.5358 -1.5486 36 1 4.4587 -2.1482 -2.2719 37 1 6.2561 -3.0757 -0.8654 38 1 6.1183 -2.8988 1.5814 39 1 5.8919 -2.7216 3.3858 40 1 4.8533 -0.0725 5.7333 41 1 6.4769 -0.5501 5.1524 42 1 7.1297 -2.0660 10.5524 43 1 7.3488 -2.7051 7.5648 44 1 5.6551 -2.9612 8.0697 45 1 5.8970 -5.1418 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077408685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:18 Heat of formation + Delta-G solvation = -81.743769 kcal Electronic energy + Delta-G solvation = -28468.537638 eV Core-core repulsion = 24451.276617 eV Total energy + Delta-G solvation = -4017.261020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.32928 -40.94611 -39.42124 -38.30770 -36.71101 -35.62837 -34.21172 -33.67136 -32.15305 -31.37736 -30.10169 -28.75971 -27.53613 -26.51037 -24.64592 -23.04963 -22.67958 -22.44059 -21.96035 -21.32412 -19.24730 -18.60197 -18.52335 -18.18950 -17.70092 -17.23221 -16.74326 -16.37536 -16.16118 -15.79995 -15.71135 -15.56085 -14.86966 -14.74096 -14.50131 -14.35275 -14.14536 -14.07793 -13.80013 -13.67715 -13.37730 -13.19712 -13.15781 -13.01782 -12.78886 -12.76557 -12.75608 -12.43302 -12.07810 -11.98895 -11.91342 -11.71886 -11.58023 -11.15648 -10.84374 -10.79848 -10.29207 -9.91009 -9.17816 -8.99932 -7.91266 -5.28822 -0.17912 0.30634 1.43876 1.45689 1.56092 1.82029 1.97725 2.24035 2.45712 2.77666 3.09357 3.29245 3.40219 3.48551 3.50562 3.65269 3.86152 3.91805 4.00390 4.01259 4.13557 4.18175 4.21020 4.29808 4.39021 4.47765 4.53401 4.66474 4.71894 4.77414 4.79633 4.91600 4.94890 5.04995 5.17511 5.18572 5.32507 5.33710 5.38898 5.40174 5.42372 5.63400 5.69160 6.10805 6.16417 6.49941 6.86064 7.02373 7.19606 7.65800 8.28708 9.18730 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002739 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.653347 B =10220.391392 C =11088.730841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.093 4.093 5 C -0.193 4.193 6 C -0.036 4.036 7 C -0.147 4.147 8 C -0.052 4.052 9 C -0.185 4.185 10 C 0.551 3.449 11 O -0.578 6.578 12 N -0.696 5.696 13 C 0.155 3.845 14 H 0.065 0.935 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.982 3.018 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.162 3.838 26 C 0.094 3.906 27 H 0.099 0.901 28 O -0.569 6.569 29 C 0.134 3.866 30 O -0.317 6.317 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.157 0.843 39 H 0.415 0.585 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.031 0.969 44 H 0.021 0.979 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -3.561 -29.298 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 H 0.107 0.893 4 C -0.129 4.129 5 C -0.194 4.194 6 C -0.054 4.054 7 C -0.165 4.165 8 C -0.071 4.071 9 C -0.189 4.189 10 C 0.340 3.660 11 O -0.458 6.458 12 N -0.349 5.349 13 C 0.048 3.952 14 H 0.083 0.917 15 C 0.006 3.994 16 N -0.350 5.350 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.810 3.190 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.211 1.211 25 C 0.036 3.964 26 C 0.033 3.967 27 H 0.117 0.883 28 O -0.376 6.376 29 C 0.086 3.914 30 O -0.231 6.231 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.185 0.815 37 H 0.191 0.809 38 H 0.174 0.826 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.236 -2.852 -28.786 29.236 hybrid contribution 0.639 0.286 1.741 1.877 sum -3.597 -2.565 -27.045 27.404 Atomic orbital electron populations 1.21893 0.90706 1.03340 1.04209 1.23839 0.97236 0.95738 0.83272 0.89285 1.21927 0.93511 0.99555 0.97949 1.21201 0.99922 1.06361 0.91873 1.20991 0.90108 0.92196 1.02132 1.21440 1.00933 1.01977 0.92105 1.21407 0.94474 0.94338 0.96868 1.19327 0.97466 1.11465 0.90647 1.18727 0.81890 0.77543 0.87819 1.90802 1.34142 1.45213 1.75658 1.45538 1.24118 1.60047 1.05206 1.21706 0.99217 0.94664 0.79603 0.91710 1.21892 0.96421 0.95157 0.85945 1.44528 1.79471 1.04414 1.06546 1.19471 1.39070 0.89327 0.89975 0.90337 1.25662 1.01446 0.98726 0.99531 1.70125 1.52592 1.15870 1.20955 0.84961 0.77148 0.78311 0.78577 1.19377 1.21813 1.21092 1.21639 0.98448 0.83345 0.92971 1.23125 0.94228 0.83535 0.95779 0.88324 1.86446 1.45183 1.22255 1.83759 1.19906 0.85842 0.91920 0.93706 1.87015 1.34113 1.62045 1.39908 0.91973 0.92531 0.86993 0.85933 0.87623 0.81466 0.80910 0.82587 0.74626 0.95442 0.93972 0.94026 0.95108 0.96068 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.59 71.98 0.69 -1.51 16 2 C 0.05 1.07 4.26 31.18 0.13 1.20 16 3 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.09 -1.22 6.65 30.74 0.20 -1.02 16 5 C -0.19 -3.59 6.27 -19.54 -0.12 -3.71 16 6 C -0.04 -0.45 10.02 22.23 0.22 -0.23 16 7 C -0.15 -1.79 10.05 22.26 0.22 -1.57 16 8 C -0.05 -0.95 9.51 22.47 0.21 -0.74 16 9 C -0.19 -5.28 5.89 -19.93 -0.12 -5.40 16 10 C 0.55 20.32 7.76 86.70 0.67 20.99 16 11 O -0.58 -27.45 15.61 10.91 0.17 -27.28 16 12 N -0.70 -22.57 5.18 -439.10 -2.27 -24.85 16 13 C 0.15 6.32 3.04 46.38 0.14 6.46 16 14 H 0.06 3.16 7.73 -2.38 -0.02 3.15 16 15 C 0.13 6.16 6.93 86.86 0.60 6.76 16 16 N -0.62 -33.84 3.39 -691.96 -2.35 -36.19 16 17 C -0.25 -14.73 10.28 84.03 0.86 -13.86 16 18 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 19 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 20 N -0.95 -57.06 10.31 21.65 0.22 -56.83 16 21 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.16 8.04 5.16 86.73 0.45 8.48 16 26 C 0.09 3.48 3.94 31.79 0.13 3.61 16 27 H 0.10 2.92 8.00 -2.39 -0.02 2.91 16 28 O -0.57 -19.60 13.40 -148.98 -2.00 -21.60 16 29 C 0.13 3.81 6.73 23.01 0.15 3.96 16 30 O -0.32 -10.15 9.84 -77.10 -0.76 -10.91 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.11 7.92 -2.39 -0.02 1.09 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.16 1.98 6.37 -2.91 -0.02 1.97 16 39 H 0.41 9.71 6.53 -92.71 -0.61 9.11 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.03 1.62 7.51 -2.39 -0.02 1.61 16 44 H 0.02 1.21 7.29 -2.38 -0.02 1.19 16 45 H 0.40 9.95 9.12 -74.06 -0.68 9.28 16 Total: -1.00 -86.86 369.89 -0.28 -87.14 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.25 Total: 21.17 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.92 Total: 20.39 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.40 Total: -117.87 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -2.58 Total: -59.78 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -86.86 -0.28 -87.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077408685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.397 kcal (2) G-P(sol) polarization free energy of solvation -86.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds