Wall clock time and date at job start Tue Mar 31 2020 17:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.66194 * 2 1 4 4 C 1.54703 * 110.74286 * 123.20263 * 2 1 3 5 5 C 1.51673 * 101.90090 * 92.98678 * 4 2 1 6 6 C 1.37308 * 132.06164 * 195.86468 * 5 4 2 7 7 C 1.39813 * 119.85949 * 179.70331 * 6 5 4 8 8 C 1.47599 * 120.26580 * 179.77087 * 7 6 5 9 9 O 1.21591 * 120.00247 * 359.71545 * 8 7 6 10 10 N 1.34777 * 120.00030 * 179.71802 * 8 7 6 11 11 C 1.46506 * 120.00239 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.63965 * 31.85968 * 11 10 8 13 13 C 1.54337 * 110.84851 * 268.69303 * 11 10 8 14 14 N 1.47020 * 107.26210 * 219.67060 * 13 11 10 15 15 C 1.36945 * 125.64525 * 178.85184 * 14 13 11 16 16 H 1.07997 * 119.99756 * 359.71717 * 15 14 13 17 17 C 1.38805 * 119.99878 * 179.71622 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47420 * 108.70626 * 358.58837 * 14 13 11 24 24 C 1.54914 * 104.83159 * 24.35323 * 23 14 13 25 25 H 1.08999 * 110.99936 * 81.10677 * 24 23 14 26 26 O 1.42894 * 111.00321 * 204.91376 * 24 23 14 27 27 C 1.39750 * 119.46795 * 359.48695 * 7 6 5 28 28 C 1.37474 * 120.20030 * 0.40000 * 27 7 6 29 29 C 1.39178 * 107.00407 * 15.38852 * 5 4 2 30 30 O 1.36000 * 111.16797 * 1.11539 * 29 5 4 31 31 H 1.09002 * 109.47158 * 296.79390 * 1 2 3 32 32 H 1.08995 * 109.46983 * 56.79453 * 1 2 3 33 33 H 1.09002 * 109.46800 * 176.79866 * 1 2 3 34 34 H 1.08997 * 110.94587 * 334.83316 * 4 2 1 35 35 H 1.09008 * 110.94086 * 211.13449 * 4 2 1 36 36 H 1.07999 * 120.07432 * 359.46176 * 6 5 4 37 37 H 0.97006 * 120.00243 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.98748 * 100.19776 * 13 11 10 39 39 H 1.09001 * 109.78230 * 339.03245 * 13 11 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.36700 * 143.19620 * 23 14 13 42 42 H 1.08999 * 110.36672 * 265.51958 * 23 14 13 43 43 H 0.96700 * 114.00147 * 298.54936 * 26 24 23 44 44 H 1.07995 * 119.90364 * 180.41374 * 27 7 6 45 45 H 1.08001 * 119.78351 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0779 -0.7922 1.2106 5 6 2.2610 -2.1776 0.6208 6 6 2.4418 -3.4083 1.2021 7 6 2.5803 -4.5441 0.3987 8 6 2.7801 -5.8707 1.0140 9 8 2.8299 -5.9784 2.2241 10 7 2.9073 -6.9628 0.2345 11 6 3.1062 -8.2796 0.8452 12 1 2.5986 -8.3372 1.8080 13 6 4.6096 -8.5908 1.0024 14 7 4.7979 -10.0113 0.6735 15 6 5.9942 -10.6779 0.6696 16 1 6.9050 -10.1540 0.9192 17 6 6.0360 -12.0268 0.3449 18 7 4.9259 -12.6651 0.0402 19 14 7.6679 -12.9358 0.3389 20 1 8.2794 -12.8464 -1.0114 21 1 8.5801 -12.3220 1.3370 22 1 7.4414 -14.3617 0.6863 23 6 3.4848 -10.6008 0.3547 24 6 2.6136 -9.4045 -0.1031 25 1 2.8121 -9.1529 -1.1449 26 8 1.2252 -9.6746 0.1002 27 6 2.5221 -4.4140 -0.9916 28 6 2.3384 -3.1774 -1.5633 29 6 2.2082 -2.0409 -0.7633 30 8 2.0391 -0.7401 -1.1222 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5628 -0.8598 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3543 -0.8083 2.0255 35 1 3.0308 -0.3823 1.5454 36 1 2.4808 -3.4983 2.2777 37 1 2.8680 -6.8770 -0.7310 38 1 4.9235 -8.4033 2.0293 39 1 5.1882 -7.9716 0.3168 40 1 4.9553 -13.6076 -0.1871 41 1 3.5815 -11.3297 -0.4499 42 1 3.0533 -11.0673 1.2404 43 1 0.8950 -10.4340 -0.3992 44 1 2.6216 -5.2876 -1.6187 45 1 2.2941 -3.0846 -2.6384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077842199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:46 Heat of formation + Delta-G solvation = -56.898399 kcal Electronic energy + Delta-G solvation = -27998.227037 eV Core-core repulsion = 23982.043393 eV Total energy + Delta-G solvation = -4016.183644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60317 -39.84091 -38.07186 -37.07040 -35.07812 -34.15300 -33.51113 -31.92151 -31.11733 -30.51279 -28.42594 -27.34124 -26.79274 -24.71505 -23.56593 -22.38418 -21.94982 -20.77816 -20.46779 -19.94127 -17.91413 -17.46859 -17.14255 -16.77506 -16.59228 -16.23650 -15.58281 -15.09722 -14.66194 -14.49808 -14.44652 -14.00318 -13.91914 -13.75140 -13.50111 -13.27700 -12.98387 -12.92241 -12.79648 -12.60524 -12.49331 -12.31436 -11.90614 -11.62086 -11.46442 -11.30920 -11.16690 -11.06418 -10.98746 -10.84538 -10.20327 -9.96193 -9.87437 -9.70294 -9.31989 -9.21838 -8.82507 -8.73556 -8.41123 -6.93660 -5.73831 -3.16206 0.66973 1.05301 2.71925 2.93143 3.26734 3.37066 3.42375 3.44580 3.70412 3.99920 4.17560 4.39341 4.42471 4.52697 4.60296 4.69868 4.73782 4.83167 4.94676 5.11171 5.17133 5.27981 5.31373 5.40438 5.40702 5.42457 5.62810 5.63502 5.65928 5.72883 5.85509 5.90217 6.04701 6.07367 6.12496 6.16209 6.22796 6.46677 6.66266 6.81653 6.92631 7.29560 7.50786 7.66123 7.72700 8.09198 8.23823 8.38877 9.12394 9.72835 10.35098 11.30571 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.002274 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.205248 B =12311.189093 C =12632.052470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.117 0.883 4 C -0.105 4.105 5 C -0.184 4.184 6 C -0.010 4.010 7 C -0.157 4.157 8 C 0.562 3.438 9 O -0.539 6.539 10 N -0.709 5.709 11 C 0.142 3.858 12 H 0.103 0.897 13 C 0.129 3.871 14 N -0.600 5.600 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.918 3.082 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.129 3.871 24 C 0.067 3.933 25 H 0.062 0.938 26 O -0.566 6.566 27 C -0.049 4.049 28 C -0.146 4.146 29 C 0.128 3.872 30 O -0.298 6.298 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.397 0.603 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.253 0.747 41 H 0.114 0.886 42 H 0.026 0.974 43 H 0.378 0.622 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 23.248 -3.799 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.135 0.865 4 C -0.142 4.142 5 C -0.185 4.185 6 C -0.029 4.029 7 C -0.160 4.160 8 C 0.349 3.651 9 O -0.417 6.417 10 N -0.359 5.359 11 C 0.037 3.963 12 H 0.121 0.879 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.207 4.207 18 N -0.574 5.574 19 Si 0.748 3.252 20 H -0.215 1.215 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.003 3.997 24 C 0.006 3.994 25 H 0.079 0.921 26 O -0.371 6.371 27 C -0.068 4.068 28 C -0.164 4.164 29 C 0.082 3.918 30 O -0.211 6.211 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.232 0.768 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.044 0.956 43 H 0.225 0.775 44 H 0.154 0.846 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.603 23.583 -2.769 25.613 hybrid contribution 0.774 -0.918 -0.695 1.388 sum -8.829 22.664 -3.464 24.569 Atomic orbital electron populations 1.22264 0.94012 1.03495 1.03195 1.23468 0.94883 0.96397 0.83248 0.86483 1.21874 1.02933 0.90974 0.98434 1.20653 1.08688 0.95379 0.93816 1.20349 0.92774 0.89037 1.00719 1.19831 1.08779 0.93843 0.93560 1.18037 0.76519 0.83827 0.86718 1.90781 1.50765 1.86325 1.13856 1.45871 1.73176 1.07042 1.09855 1.22039 0.96878 0.79592 0.97811 0.87907 1.21641 0.91847 0.87732 0.98558 1.44297 1.03812 1.04076 1.80593 1.19110 0.84470 0.91906 1.39488 0.90174 1.24804 0.97596 0.96400 1.01868 1.69732 1.24761 1.09548 1.53313 0.86014 0.82384 0.79017 0.77746 1.21523 1.20635 1.21581 1.22580 0.83385 0.92520 1.01240 1.23643 0.81523 0.97264 0.96956 0.92052 1.86410 1.24396 1.53433 1.72852 1.21055 0.95028 0.96932 0.93746 1.20159 1.07163 0.89057 1.00048 1.19821 0.94161 0.84982 0.92793 1.86855 1.79513 1.16499 1.38277 0.90493 0.91280 0.91671 0.88695 0.88870 0.84330 0.76790 0.94772 0.95088 0.93585 0.86892 0.95637 0.77512 0.84569 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.50 37.16 0.35 -0.63 16 2 C 0.08 0.51 4.31 -25.84 -0.11 0.40 16 3 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.76 6.65 -26.51 -0.18 -0.93 16 5 C -0.18 -1.93 6.25 -104.13 -0.65 -2.58 16 6 C -0.01 -0.12 9.58 -39.33 -0.38 -0.50 16 7 C -0.16 -2.05 5.88 -104.92 -0.62 -2.67 16 8 C 0.56 9.16 7.77 -12.44 -0.10 9.06 16 9 O -0.54 -10.72 16.00 5.29 0.08 -10.63 16 10 N -0.71 -11.07 5.06 -53.04 -0.27 -11.34 16 11 C 0.14 2.70 3.05 -66.09 -0.20 2.50 16 12 H 0.10 2.19 7.55 -51.93 -0.39 1.79 16 13 C 0.13 2.82 7.00 -3.06 -0.02 2.80 16 14 N -0.60 -15.30 3.39 -170.07 -0.58 -15.87 16 15 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 19 Si 0.92 21.82 29.55 -169.99 -5.02 16.79 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.13 3.03 5.62 -2.53 -0.01 3.02 16 24 C 0.07 1.24 4.06 -24.58 -0.10 1.15 16 25 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 26 O -0.57 -9.71 13.47 -35.23 -0.47 -10.19 16 27 C -0.05 -0.52 9.52 -39.30 -0.37 -0.89 16 28 C -0.15 -1.46 10.05 -39.36 -0.40 -1.86 16 29 C 0.13 1.37 6.91 -38.73 -0.27 1.10 16 30 O -0.30 -2.97 10.81 -19.74 -0.21 -3.18 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 35 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.14 1.69 7.66 -52.49 -0.40 1.29 16 37 H 0.40 5.02 6.60 -40.82 -0.27 4.75 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 4.97 9.11 45.56 0.42 5.38 16 44 H 0.14 1.14 6.40 -52.49 -0.34 0.80 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -33.82 369.88 -9.10 -42.92 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.46 Total: 8.33 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -3.30 Total: 3.28 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.29 Total: -52.90 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.60 Total: -24.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.82 -9.10 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077842199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.983 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds