Wall clock time and date at job start Tue Mar 31 2020 17:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.66194 * 2 1 4 4 C 1.54703 * 110.74286 * 123.20263 * 2 1 3 5 5 C 1.51673 * 101.90090 * 92.98678 * 4 2 1 6 6 C 1.37308 * 132.06164 * 195.86468 * 5 4 2 7 7 C 1.39813 * 119.85949 * 179.70331 * 6 5 4 8 8 C 1.47599 * 120.26580 * 179.77087 * 7 6 5 9 9 O 1.21591 * 120.00247 * 359.71545 * 8 7 6 10 10 N 1.34777 * 120.00030 * 179.71802 * 8 7 6 11 11 C 1.46506 * 120.00239 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.63965 * 31.85968 * 11 10 8 13 13 C 1.54337 * 110.84851 * 268.69303 * 11 10 8 14 14 N 1.47020 * 107.26210 * 219.67060 * 13 11 10 15 15 C 1.36945 * 125.64525 * 178.85184 * 14 13 11 16 16 H 1.07997 * 119.99756 * 359.71717 * 15 14 13 17 17 C 1.38805 * 119.99878 * 179.71622 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47420 * 108.70626 * 358.58837 * 14 13 11 24 24 C 1.54914 * 104.83159 * 24.35323 * 23 14 13 25 25 H 1.08999 * 110.99936 * 81.10677 * 24 23 14 26 26 O 1.42894 * 111.00321 * 204.91376 * 24 23 14 27 27 C 1.39750 * 119.46795 * 359.48695 * 7 6 5 28 28 C 1.37474 * 120.20030 * 0.40000 * 27 7 6 29 29 C 1.39178 * 107.00407 * 15.38852 * 5 4 2 30 30 O 1.36000 * 111.16797 * 1.11539 * 29 5 4 31 31 H 1.09002 * 109.47158 * 296.79390 * 1 2 3 32 32 H 1.08995 * 109.46983 * 56.79453 * 1 2 3 33 33 H 1.09002 * 109.46800 * 176.79866 * 1 2 3 34 34 H 1.08997 * 110.94587 * 334.83316 * 4 2 1 35 35 H 1.09008 * 110.94086 * 211.13449 * 4 2 1 36 36 H 1.07999 * 120.07432 * 359.46176 * 6 5 4 37 37 H 0.97006 * 120.00243 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.98748 * 100.19776 * 13 11 10 39 39 H 1.09001 * 109.78230 * 339.03245 * 13 11 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.36700 * 143.19620 * 23 14 13 42 42 H 1.08999 * 110.36672 * 265.51958 * 23 14 13 43 43 H 0.96700 * 114.00147 * 298.54936 * 26 24 23 44 44 H 1.07995 * 119.90364 * 180.41374 * 27 7 6 45 45 H 1.08001 * 119.78351 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0779 -0.7922 1.2106 5 6 2.2610 -2.1776 0.6208 6 6 2.4418 -3.4083 1.2021 7 6 2.5803 -4.5441 0.3987 8 6 2.7801 -5.8707 1.0140 9 8 2.8299 -5.9784 2.2241 10 7 2.9073 -6.9628 0.2345 11 6 3.1062 -8.2796 0.8452 12 1 2.5986 -8.3372 1.8080 13 6 4.6096 -8.5908 1.0024 14 7 4.7979 -10.0113 0.6735 15 6 5.9942 -10.6779 0.6696 16 1 6.9050 -10.1540 0.9192 17 6 6.0360 -12.0268 0.3449 18 7 4.9259 -12.6651 0.0402 19 14 7.6679 -12.9358 0.3389 20 1 8.2794 -12.8464 -1.0114 21 1 8.5801 -12.3220 1.3370 22 1 7.4414 -14.3617 0.6863 23 6 3.4848 -10.6008 0.3547 24 6 2.6136 -9.4045 -0.1031 25 1 2.8121 -9.1529 -1.1449 26 8 1.2252 -9.6746 0.1002 27 6 2.5221 -4.4140 -0.9916 28 6 2.3384 -3.1774 -1.5633 29 6 2.2082 -2.0409 -0.7633 30 8 2.0391 -0.7401 -1.1222 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5628 -0.8598 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3543 -0.8083 2.0255 35 1 3.0308 -0.3823 1.5454 36 1 2.4808 -3.4983 2.2777 37 1 2.8680 -6.8770 -0.7310 38 1 4.9235 -8.4033 2.0293 39 1 5.1882 -7.9716 0.3168 40 1 4.9553 -13.6076 -0.1871 41 1 3.5815 -11.3297 -0.4499 42 1 3.0533 -11.0673 1.2404 43 1 0.8950 -10.4340 -0.3992 44 1 2.6216 -5.2876 -1.6187 45 1 2.2941 -3.0846 -2.6384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077842199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:44 Heat of formation + Delta-G solvation = -81.760438 kcal Electronic energy + Delta-G solvation = -27999.305136 eV Core-core repulsion = 23982.043393 eV Total energy + Delta-G solvation = -4017.261743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.34506 -41.14264 -39.54272 -38.09231 -36.68993 -35.68507 -34.19883 -33.69356 -31.96542 -31.45365 -30.12835 -28.79559 -27.72645 -26.46664 -24.74513 -23.16282 -22.58346 -22.47502 -21.92900 -21.35873 -19.23820 -18.74228 -18.35887 -18.15057 -17.55401 -17.23751 -16.92233 -16.52693 -16.08365 -15.89362 -15.50630 -15.21577 -15.08432 -14.81981 -14.67271 -14.55276 -14.20213 -13.99755 -13.81753 -13.66741 -13.51563 -13.22500 -13.21732 -13.10116 -13.00350 -12.84891 -12.72250 -12.15980 -12.07895 -11.94410 -11.85126 -11.77876 -11.44184 -11.27513 -10.90863 -10.77263 -10.26536 -10.02251 -9.25053 -8.98247 -7.82782 -5.29053 -0.25071 0.24209 1.47539 1.49279 1.58044 1.70696 1.97059 2.20191 2.46760 2.72993 3.06190 3.28802 3.38401 3.51322 3.60628 3.64307 3.80819 3.87390 3.94452 4.04206 4.10260 4.14435 4.19939 4.27574 4.42374 4.47024 4.56821 4.63571 4.76807 4.81160 4.82568 4.87132 4.91770 5.04522 5.09337 5.22298 5.22889 5.26630 5.37139 5.37961 5.43561 5.45882 5.66802 6.07782 6.20344 6.46478 6.85587 7.04055 7.13517 7.67887 8.30115 9.19126 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.002274 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.205248 B =12311.189093 C =12632.052470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.144 0.856 4 C -0.105 4.105 5 C -0.190 4.190 6 C -0.022 4.022 7 C -0.178 4.178 8 C 0.562 3.438 9 O -0.584 6.584 10 N -0.697 5.697 11 C 0.155 3.845 12 H 0.078 0.922 13 C 0.131 3.869 14 N -0.619 5.619 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.062 4.062 18 N -0.946 5.946 19 Si 0.984 3.016 20 H -0.280 1.280 21 H -0.275 1.275 22 H -0.292 1.292 23 C 0.133 3.867 24 C 0.092 3.908 25 H 0.089 0.911 26 O -0.568 6.568 27 C -0.041 4.041 28 C -0.148 4.148 29 C 0.126 3.874 30 O -0.308 6.308 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.414 0.586 38 H 0.015 0.985 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.093 0.907 42 H -0.008 1.008 43 H 0.397 0.603 44 H 0.160 0.840 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 25.405 -5.504 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.162 0.838 4 C -0.142 4.142 5 C -0.191 4.191 6 C -0.041 4.041 7 C -0.181 4.181 8 C 0.351 3.649 9 O -0.465 6.465 10 N -0.348 5.348 11 C 0.049 3.951 12 H 0.096 0.904 13 C 0.004 3.996 14 N -0.346 5.346 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.812 3.188 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.219 1.219 23 C 0.007 3.993 24 C 0.031 3.969 25 H 0.107 0.893 26 O -0.376 6.376 27 C -0.059 4.059 28 C -0.166 4.166 29 C 0.080 3.920 30 O -0.222 6.222 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.253 0.747 38 H 0.033 0.967 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.010 0.990 43 H 0.248 0.752 44 H 0.177 0.823 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.872 25.769 -4.514 27.962 hybrid contribution 0.800 -1.487 -0.143 1.695 sum -9.071 24.282 -4.657 26.336 Atomic orbital electron populations 1.22273 0.93296 1.02637 1.04531 1.23788 0.95508 0.97128 0.81860 0.83810 1.22011 1.04021 0.89066 0.99074 1.20914 1.07789 0.96026 0.94325 1.20354 0.93613 0.89782 1.00354 1.19616 1.11602 0.92076 0.94797 1.18553 0.75233 0.84883 0.86204 1.90754 1.52820 1.87031 1.15885 1.45631 1.72918 1.05560 1.10718 1.21575 0.94654 0.81596 0.97283 0.90384 1.21686 0.94057 0.86280 0.97582 1.44548 1.03894 1.05471 1.80712 1.19434 0.85449 0.92615 1.39702 0.90154 1.25633 1.00933 0.97107 1.01756 1.69948 1.26428 1.09458 1.53711 0.85003 0.78600 0.77249 0.77987 1.20637 1.19972 1.21878 1.22408 0.83658 0.94170 0.99082 1.23274 0.81448 0.94381 0.97804 0.89318 1.86383 1.23001 1.54573 1.73620 1.21247 0.93869 0.98163 0.92655 1.20450 1.06314 0.88561 1.01276 1.20095 0.93321 0.85637 0.92976 1.86850 1.79493 1.16137 1.39750 0.88517 0.90727 0.93478 0.87313 0.87793 0.85349 0.74705 0.96702 0.93924 0.93934 0.88899 0.98984 0.75234 0.82292 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.50 71.98 0.68 -0.85 16 2 C 0.07 0.77 4.31 31.17 0.13 0.91 16 3 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.10 -1.29 6.65 30.74 0.20 -1.09 16 5 C -0.19 -3.73 6.25 -19.55 -0.12 -3.85 16 6 C -0.02 -0.53 9.58 22.43 0.21 -0.32 16 7 C -0.18 -4.55 5.88 -20.06 -0.12 -4.66 16 8 C 0.56 18.39 7.77 86.71 0.67 19.07 16 9 O -0.58 -24.07 16.00 -4.00 -0.06 -24.13 16 10 N -0.70 -21.20 5.06 -439.98 -2.23 -23.43 16 11 C 0.16 5.96 3.05 46.18 0.14 6.10 16 12 H 0.08 3.43 7.55 -2.39 -0.02 3.41 16 13 C 0.13 5.81 7.00 86.73 0.61 6.42 16 14 N -0.62 -32.19 3.39 -691.97 -2.35 -34.54 16 15 C -0.24 -13.66 10.27 84.03 0.86 -12.80 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.95 -54.60 10.09 21.65 0.22 -54.38 16 19 Si 0.98 45.04 29.55 68.60 2.03 47.06 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 C 0.13 6.40 5.62 86.86 0.49 6.89 16 24 C 0.09 3.35 4.06 31.99 0.13 3.48 16 25 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 26 O -0.57 -18.78 13.47 -148.98 -2.01 -20.79 16 27 C -0.04 -0.78 9.52 22.46 0.21 -0.57 16 28 C -0.15 -2.60 10.05 22.42 0.23 -2.38 16 29 C 0.13 2.45 6.91 22.82 0.16 2.60 16 30 O -0.31 -5.40 10.81 -93.55 -1.01 -6.41 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.60 8.07 -2.39 -0.02 0.58 16 34 H 0.11 1.03 7.92 -2.39 -0.02 1.02 16 35 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.13 3.28 7.66 -2.91 -0.02 3.26 16 37 H 0.41 9.56 6.60 -92.70 -0.61 8.94 16 38 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 40 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.09 4.88 5.87 -2.39 -0.01 4.87 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.40 9.79 9.11 -74.06 -0.67 9.12 16 44 H 0.16 2.18 6.40 -2.91 -0.02 2.16 16 45 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.19 369.88 -0.70 -75.89 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.25 Total: 24.74 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 4.96 Total: 15.99 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.36 Total: -112.35 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -3.08 Total: -51.33 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.19 -0.70 -75.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077842199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.874 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds