Wall clock time and date at job start Tue Mar 31 2020 17:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64061 * 2 1 4 4 C 1.54326 * 110.72034 * 236.66259 * 2 1 3 5 5 N 1.47283 * 107.30758 * 219.45548 * 4 2 1 6 6 C 1.36940 * 125.79385 * 178.92945 * 5 4 2 7 7 H 1.07998 * 120.00050 * 341.51182 * 6 5 4 8 8 C 1.38813 * 119.99845 * 161.52064 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60351 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.60447 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47426 * 108.55833 * 358.92209 * 5 4 2 15 15 C 1.54908 * 104.92948 * 24.15781 * 14 5 4 16 16 H 1.08995 * 111.00473 * 81.00582 * 15 14 5 17 17 N 1.46501 * 111.00655 * 204.86061 * 15 14 5 18 18 C 1.34768 * 119.99654 * 273.54684 * 17 15 14 19 19 O 1.21279 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99636 * 180.02562 * 18 17 15 21 21 H 1.08997 * 109.70500 * 54.41267 * 20 18 17 22 22 C 1.53470 * 109.70997 * 293.78091 * 20 18 17 23 23 O 1.43164 * 108.25437 * 180.59480 * 22 20 18 24 24 C 1.36103 * 116.71231 * 46.19849 * 23 22 20 25 25 C 1.38704 * 119.39851 * 162.95231 * 24 23 22 26 26 C 1.38198 * 120.06660 * 179.66938 * 25 24 23 27 27 C 1.38250 * 120.11196 * 359.97438 * 26 25 24 28 28 C 1.38195 * 120.11695 * 0.07887 * 27 26 25 29 29 C 1.38702 * 120.06472 * 359.96549 * 28 27 26 30 30 O 1.36111 * 119.39776 * 179.86368 * 29 28 27 31 31 H 1.09001 * 109.47325 * 296.85848 * 1 2 3 32 32 H 1.09003 * 109.47216 * 56.86254 * 1 2 3 33 33 H 1.08998 * 109.46951 * 176.85651 * 1 2 3 34 34 H 1.09004 * 109.87914 * 338.86221 * 4 2 1 35 35 H 1.09000 * 109.88029 * 99.86923 * 4 2 1 36 36 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.36505 * 265.26095 * 14 5 4 38 38 H 1.09001 * 110.36209 * 143.05158 * 14 5 4 39 39 H 0.96998 * 119.99523 * 93.54312 * 17 15 14 40 40 H 1.08995 * 109.70960 * 300.26885 * 22 20 18 41 41 H 1.09004 * 109.70577 * 60.89453 * 22 20 18 42 42 H 1.07998 * 119.96618 * 359.65081 * 25 24 23 43 43 H 1.07999 * 119.93840 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.93976 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.96961 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2465 -1.5539 -0.7363 6 6 4.0072 -2.4027 -1.4953 7 1 3.6165 -2.7949 -2.4226 8 6 5.2805 -2.7591 -1.0728 9 7 5.8360 -3.8660 -1.5186 10 14 6.2055 -1.6681 0.1285 11 1 5.7957 -2.0013 1.5164 12 1 7.6658 -1.8913 -0.0234 13 1 5.8905 -0.2444 -0.1523 14 6 3.4632 -1.2486 0.6896 15 6 2.0790 -0.7934 1.2152 16 1 1.4452 -1.6510 1.4403 17 7 2.2215 0.0737 2.3874 18 6 2.3160 -0.4673 3.6181 19 8 2.2826 -1.6718 3.7553 20 6 2.4620 0.4247 4.8240 21 1 1.6523 1.1542 4.8417 22 6 3.8130 1.1507 4.7703 23 8 3.9249 1.9766 5.9343 24 6 3.5885 1.4066 7.1235 25 6 3.9999 2.0042 8.3056 26 6 3.6602 1.4409 9.5211 27 6 2.9092 0.2810 9.5622 28 6 2.4969 -0.3202 8.3881 29 6 2.8352 0.2394 7.1649 30 8 2.4243 -0.3656 6.0170 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4785 -1.5750 35 1 2.3715 -0.1059 -1.9986 36 1 6.7259 -4.1149 -1.2236 37 1 4.1932 -0.4465 0.7991 38 1 3.7969 -2.1394 1.2218 39 1 2.2478 1.0371 2.2776 40 1 4.6224 0.4208 4.7586 41 1 3.8624 1.7695 3.8742 42 1 4.5866 2.9104 8.2762 43 1 3.9821 1.9078 10.4402 44 1 2.6449 -0.1566 10.5136 45 1 1.9106 -1.2265 8.4231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080887932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:49 Heat of formation + Delta-G solvation = -44.172814 kcal Electronic energy + Delta-G solvation = -28853.709062 eV Core-core repulsion = 24838.077241 eV Total energy + Delta-G solvation = -4015.631822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.72534 -39.90158 -38.21986 -37.75797 -37.30122 -34.33382 -32.93800 -31.69892 -31.07830 -30.94926 -29.11036 -27.87498 -26.22745 -25.59329 -23.62373 -23.10059 -21.91113 -21.03327 -20.61792 -19.85117 -19.06391 -18.06506 -17.68289 -16.98048 -16.56584 -16.20770 -15.84398 -15.46095 -15.21543 -14.98901 -14.78787 -14.40566 -14.23025 -14.14517 -13.90910 -13.62867 -13.46880 -13.20730 -13.05042 -12.44466 -12.28740 -12.23268 -12.07373 -11.90143 -11.67348 -11.45966 -11.34387 -11.22685 -10.89785 -10.74445 -10.51360 -10.37072 -10.06187 -9.89066 -9.50154 -9.01973 -8.95556 -8.68397 -8.38268 -7.09805 -5.97287 -3.28339 0.98989 1.00091 2.25907 2.34881 2.73922 3.30522 3.35201 3.42592 3.43684 3.46741 3.82540 4.26186 4.33562 4.38731 4.52879 4.66305 4.72274 4.73681 4.93669 4.94917 5.05170 5.08236 5.09413 5.14462 5.14765 5.44946 5.51978 5.62683 5.64984 5.77065 5.83367 5.87231 5.89560 6.03217 6.15910 6.18792 6.25009 6.30892 6.47723 6.52267 6.57214 6.66610 6.70784 7.07690 7.34797 7.65139 8.05059 8.28535 8.79248 9.65557 10.11987 11.18706 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003217 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.455215 B = 8701.458825 C = 9604.724759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.079 0.921 4 C 0.140 3.860 5 N -0.606 5.606 6 C -0.244 4.244 7 H 0.094 0.906 8 C 0.025 3.975 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.277 1.277 14 C 0.104 3.896 15 C 0.135 3.865 16 H 0.103 0.897 17 N -0.712 5.712 18 C 0.520 3.480 19 O -0.499 6.499 20 C 0.036 3.964 21 H 0.111 0.889 22 C 0.032 3.968 23 O -0.301 6.301 24 C 0.045 3.955 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.111 4.111 29 C 0.054 3.946 30 O -0.277 6.277 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 15.751 18.602 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.098 0.902 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.371 4.371 7 H 0.112 0.888 8 C -0.174 4.174 9 N -0.548 5.548 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.229 1.229 13 H -0.203 1.203 14 C -0.022 4.022 15 C 0.031 3.969 16 H 0.121 0.879 17 N -0.365 5.365 18 C 0.303 3.697 19 O -0.372 6.372 20 C -0.024 4.024 21 H 0.128 0.872 22 C -0.044 4.044 23 O -0.215 6.215 24 C 0.000 4.000 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.133 4.133 28 C -0.130 4.130 29 C 0.009 3.991 30 O -0.191 6.191 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.957 14.653 18.546 25.276 hybrid contribution 0.775 1.075 0.388 1.381 sum -8.182 15.729 18.934 25.939 Atomic orbital electron populations 1.21756 0.94218 1.02369 1.01314 1.22465 0.95924 0.99280 0.95280 0.90241 1.21470 0.90169 0.93200 0.93677 1.44700 1.32760 1.51324 1.04536 1.18623 0.94879 1.18222 1.05366 0.88793 1.24991 0.96855 0.97289 0.98300 1.69842 1.16691 1.21356 1.46931 0.87010 0.78821 0.81848 0.81353 1.21143 1.22890 1.20320 1.22274 0.93809 0.99219 0.86930 1.22428 0.98853 0.93093 0.82548 0.87897 1.45821 1.74696 1.10435 1.05558 1.19573 0.78004 0.88711 0.83409 1.90809 1.46867 1.14220 1.85308 1.22927 1.00082 0.93792 0.85639 0.87152 1.23605 0.96259 0.96056 0.88506 1.86330 1.83672 1.38600 1.12879 1.18976 0.99037 0.95135 0.86837 1.20453 1.01720 1.01559 0.89374 1.20932 0.99323 0.96353 0.97064 1.20940 0.98853 0.95975 0.97533 1.20497 1.01941 1.01589 0.88946 1.19039 0.98260 0.94504 0.87280 1.86420 1.81722 1.37839 1.13104 0.92922 0.92324 0.92109 0.94246 0.94645 0.92620 0.95557 0.91711 0.76672 0.89401 0.85228 0.84726 0.85009 0.84938 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.16 37.16 0.34 -1.22 16 2 C -0.11 -1.55 3.17 -88.78 -0.28 -1.83 16 3 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16 4 C 0.14 2.60 6.85 -2.92 -0.02 2.58 16 5 N -0.61 -14.51 3.22 -169.86 -0.55 -15.06 16 6 C -0.24 -6.95 10.58 -15.06 -0.16 -7.10 16 7 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 8 C 0.02 0.73 5.43 -17.43 -0.09 0.63 16 9 N -0.90 -28.30 13.97 55.49 0.78 -27.52 16 10 Si 0.88 22.94 24.27 -169.99 -4.13 18.81 16 11 H -0.28 -7.39 6.48 56.52 0.37 -7.02 16 12 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.28 -6.95 6.65 56.52 0.38 -6.58 16 14 C 0.10 2.28 4.38 -2.53 -0.01 2.27 16 15 C 0.14 2.24 2.76 -65.78 -0.18 2.06 16 16 H 0.10 1.87 7.64 -51.93 -0.40 1.47 16 17 N -0.71 -9.26 5.21 -51.73 -0.27 -9.53 16 18 C 0.52 7.79 7.18 -10.99 -0.08 7.71 16 19 O -0.50 -10.03 16.27 -14.13 -0.23 -10.26 16 20 C 0.04 0.44 3.44 -27.64 -0.09 0.34 16 21 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 22 C 0.03 0.35 6.53 37.40 0.24 0.59 16 23 O -0.30 -3.51 10.42 -32.86 -0.34 -3.86 16 24 C 0.05 0.54 6.49 -39.14 -0.25 0.28 16 25 C -0.11 -1.08 9.96 -39.42 -0.39 -1.47 16 26 C -0.12 -0.95 10.04 -39.59 -0.40 -1.35 16 27 C -0.11 -0.96 10.04 -39.59 -0.40 -1.36 16 28 C -0.11 -1.19 9.96 -39.43 -0.39 -1.58 16 29 C 0.05 0.70 6.49 -39.14 -0.25 0.44 16 30 O -0.28 -4.06 9.62 -47.05 -0.45 -4.51 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.04 0.72 7.76 -51.93 -0.40 0.32 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.03 0.59 5.57 -51.93 -0.29 0.30 16 38 H 0.06 1.64 6.63 -51.93 -0.34 1.30 16 39 H 0.40 3.59 8.46 -40.82 -0.35 3.24 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.13 1.01 8.09 -51.93 -0.42 0.59 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -36.14 365.22 -8.57 -44.71 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.46 Total: 0.72 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.43 Total: 0.99 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.04 Total: -52.11 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.02 Total: -18.63 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.14 -8.57 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080887932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.541 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds