Wall clock time and date at job start Tue Mar 31 2020 17:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64061 * 2 1 4 4 C 1.54326 * 110.72034 * 236.66259 * 2 1 3 5 5 N 1.47283 * 107.30758 * 219.45548 * 4 2 1 6 6 C 1.36940 * 125.79385 * 178.92945 * 5 4 2 7 7 H 1.07998 * 120.00050 * 341.51182 * 6 5 4 8 8 C 1.38813 * 119.99845 * 161.52064 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60351 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.60447 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47426 * 108.55833 * 358.92209 * 5 4 2 15 15 C 1.54908 * 104.92948 * 24.15781 * 14 5 4 16 16 H 1.08995 * 111.00473 * 81.00582 * 15 14 5 17 17 N 1.46501 * 111.00655 * 204.86061 * 15 14 5 18 18 C 1.34768 * 119.99654 * 273.54684 * 17 15 14 19 19 O 1.21279 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99636 * 180.02562 * 18 17 15 21 21 H 1.08997 * 109.70500 * 54.41267 * 20 18 17 22 22 C 1.53470 * 109.70997 * 293.78091 * 20 18 17 23 23 O 1.43164 * 108.25437 * 180.59480 * 22 20 18 24 24 C 1.36103 * 116.71231 * 46.19849 * 23 22 20 25 25 C 1.38704 * 119.39851 * 162.95231 * 24 23 22 26 26 C 1.38198 * 120.06660 * 179.66938 * 25 24 23 27 27 C 1.38250 * 120.11196 * 359.97438 * 26 25 24 28 28 C 1.38195 * 120.11695 * 0.07887 * 27 26 25 29 29 C 1.38702 * 120.06472 * 359.96549 * 28 27 26 30 30 O 1.36111 * 119.39776 * 179.86368 * 29 28 27 31 31 H 1.09001 * 109.47325 * 296.85848 * 1 2 3 32 32 H 1.09003 * 109.47216 * 56.86254 * 1 2 3 33 33 H 1.08998 * 109.46951 * 176.85651 * 1 2 3 34 34 H 1.09004 * 109.87914 * 338.86221 * 4 2 1 35 35 H 1.09000 * 109.88029 * 99.86923 * 4 2 1 36 36 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.36505 * 265.26095 * 14 5 4 38 38 H 1.09001 * 110.36209 * 143.05158 * 14 5 4 39 39 H 0.96998 * 119.99523 * 93.54312 * 17 15 14 40 40 H 1.08995 * 109.70960 * 300.26885 * 22 20 18 41 41 H 1.09004 * 109.70577 * 60.89453 * 22 20 18 42 42 H 1.07998 * 119.96618 * 359.65081 * 25 24 23 43 43 H 1.07999 * 119.93840 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.93976 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.96961 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2465 -1.5539 -0.7363 6 6 4.0072 -2.4027 -1.4953 7 1 3.6165 -2.7949 -2.4226 8 6 5.2805 -2.7591 -1.0728 9 7 5.8360 -3.8660 -1.5186 10 14 6.2055 -1.6681 0.1285 11 1 5.7957 -2.0013 1.5164 12 1 7.6658 -1.8913 -0.0234 13 1 5.8905 -0.2444 -0.1523 14 6 3.4632 -1.2486 0.6896 15 6 2.0790 -0.7934 1.2152 16 1 1.4452 -1.6510 1.4403 17 7 2.2215 0.0737 2.3874 18 6 2.3160 -0.4673 3.6181 19 8 2.2826 -1.6718 3.7553 20 6 2.4620 0.4247 4.8240 21 1 1.6523 1.1542 4.8417 22 6 3.8130 1.1507 4.7703 23 8 3.9249 1.9766 5.9343 24 6 3.5885 1.4066 7.1235 25 6 3.9999 2.0042 8.3056 26 6 3.6602 1.4409 9.5211 27 6 2.9092 0.2810 9.5622 28 6 2.4969 -0.3202 8.3881 29 6 2.8352 0.2394 7.1649 30 8 2.4243 -0.3656 6.0170 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4785 -1.5750 35 1 2.3715 -0.1059 -1.9986 36 1 6.7259 -4.1149 -1.2236 37 1 4.1932 -0.4465 0.7991 38 1 3.7969 -2.1394 1.2218 39 1 2.2478 1.0371 2.2776 40 1 4.6224 0.4208 4.7586 41 1 3.8624 1.7695 3.8742 42 1 4.5866 2.9104 8.2762 43 1 3.9821 1.9078 10.4402 44 1 2.6449 -0.1566 10.5136 45 1 1.9106 -1.2265 8.4231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080887932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:48 Heat of formation + Delta-G solvation = -70.447392 kcal Electronic energy + Delta-G solvation = -28854.848414 eV Core-core repulsion = 24838.077241 eV Total energy + Delta-G solvation = -4016.771173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.60877 -41.12637 -39.52166 -38.58472 -38.30813 -35.88193 -34.57595 -32.95287 -32.55929 -31.68006 -30.14353 -29.22090 -27.79872 -26.53612 -25.12073 -23.88946 -23.19663 -22.37627 -21.83322 -21.07799 -19.94231 -19.08996 -18.96464 -18.56814 -17.64766 -17.49146 -17.09367 -16.70983 -16.34919 -15.98638 -15.82806 -15.67453 -15.32270 -15.23892 -15.19455 -14.90670 -14.68262 -14.53378 -14.36467 -14.03549 -13.64193 -13.26943 -13.20552 -13.15324 -12.89337 -12.83974 -12.45280 -12.30683 -12.26639 -12.19415 -11.90669 -11.71692 -11.63401 -11.54072 -11.09674 -10.91239 -10.31458 -9.70443 -9.17903 -9.12776 -8.25326 -5.51469 0.25316 0.25746 1.16721 1.22854 1.25662 1.28066 1.37171 1.92058 2.33776 2.35628 2.69584 2.91898 2.99269 3.22972 3.37102 3.48006 3.52623 3.54909 3.75900 3.93392 3.97864 4.09472 4.21002 4.21481 4.29093 4.39353 4.43493 4.50285 4.53622 4.70535 4.78044 4.81905 4.89954 4.98555 5.07425 5.12324 5.16588 5.18474 5.29778 5.47821 5.48198 5.61745 5.65511 5.74885 6.03905 6.23109 6.31241 6.67967 6.95433 7.46530 8.01960 8.94458 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003217 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.455215 B = 8701.458825 C = 9604.724759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.114 0.886 4 C 0.131 3.869 5 N -0.626 5.626 6 C -0.233 4.233 7 H 0.066 0.934 8 C -0.038 4.038 9 N -0.954 5.954 10 Si 0.941 3.059 11 H -0.291 1.291 12 H -0.305 1.305 13 H -0.253 1.253 14 C 0.101 3.899 15 C 0.149 3.851 16 H 0.083 0.917 17 N -0.690 5.690 18 C 0.522 3.478 19 O -0.560 6.560 20 C 0.042 3.958 21 H 0.146 0.854 22 C 0.033 3.967 23 O -0.302 6.302 24 C 0.023 3.977 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.109 4.109 28 C -0.128 4.128 29 C 0.025 3.975 30 O -0.311 6.311 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.262 0.738 37 H 0.034 0.966 38 H 0.019 0.981 39 H 0.424 0.576 40 H 0.065 0.935 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 20.047 20.833 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 H 0.132 0.868 4 C 0.006 3.994 5 N -0.353 5.353 6 C -0.362 4.362 7 H 0.084 0.916 8 C -0.232 4.232 9 N -0.601 5.601 10 Si 0.770 3.230 11 H -0.218 1.218 12 H -0.233 1.233 13 H -0.178 1.178 14 C -0.025 4.025 15 C 0.043 3.957 16 H 0.101 0.899 17 N -0.345 5.345 18 C 0.307 3.693 19 O -0.436 6.436 20 C -0.018 4.018 21 H 0.163 0.837 22 C -0.043 4.043 23 O -0.216 6.216 24 C -0.021 4.021 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.147 4.147 29 C -0.020 4.020 30 O -0.226 6.226 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.183 0.817 42 H 0.171 0.829 43 H 0.185 0.815 44 H 0.181 0.819 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.153 19.054 20.782 29.967 hybrid contribution 1.052 -0.321 -0.255 1.129 sum -9.101 18.733 20.527 29.242 Atomic orbital electron populations 1.21737 0.91498 1.02271 1.03566 1.22439 0.97900 0.99540 0.90936 0.86763 1.21761 0.88091 0.93382 0.96135 1.44800 1.33407 1.51660 1.05461 1.18617 0.95098 1.17963 1.04485 0.91623 1.25638 0.98108 0.98475 1.01026 1.69969 1.17097 1.23238 1.49775 0.86019 0.76978 0.81195 0.78776 1.21780 1.23315 1.17756 1.22280 0.97139 0.97488 0.85625 1.22018 0.95149 0.93899 0.84623 0.89937 1.45528 1.73592 1.11375 1.03996 1.20159 0.76362 0.88265 0.84556 1.90790 1.49568 1.17040 1.86237 1.22992 1.02013 0.93095 0.83656 0.83729 1.23701 0.94657 0.96196 0.89743 1.86323 1.83810 1.38517 1.12974 1.19280 0.99831 0.95425 0.87614 1.20830 1.01501 1.02075 0.89154 1.21391 0.97804 0.95715 0.97846 1.21340 0.97727 0.95785 0.97804 1.20769 1.02559 1.01993 0.89392 1.19359 0.99880 0.95562 0.87152 1.86350 1.82440 1.39498 1.14272 0.90598 0.90104 0.93512 0.94427 0.93571 0.92902 0.94897 0.96306 0.73636 0.91689 0.81673 0.82949 0.81511 0.81949 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.16 71.98 0.66 -1.80 16 2 C -0.09 -2.19 3.17 -9.60 -0.03 -2.22 16 3 H 0.11 2.11 7.99 -2.39 -0.02 2.10 16 4 C 0.13 4.63 6.85 86.68 0.59 5.22 16 5 N -0.63 -30.11 3.22 -691.31 -2.22 -32.33 16 6 C -0.23 -13.69 10.58 84.03 0.89 -12.80 16 7 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 8 C -0.04 -2.31 5.43 84.86 0.46 -1.85 16 9 N -0.95 -62.38 13.97 21.65 0.30 -62.08 16 10 Si 0.94 48.76 24.27 68.60 1.66 50.42 16 11 H -0.29 -15.19 6.48 99.48 0.65 -14.54 16 12 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 13 H -0.25 -11.95 6.65 99.48 0.66 -11.28 16 14 C 0.10 4.41 4.38 86.85 0.38 4.79 16 15 C 0.15 4.72 2.76 46.38 0.13 4.85 16 16 H 0.08 3.01 7.64 -2.39 -0.02 2.99 16 17 N -0.69 -16.24 5.21 -435.98 -2.27 -18.51 16 18 C 0.52 15.23 7.18 87.66 0.63 15.86 16 19 O -0.56 -23.25 16.27 15.80 0.26 -23.00 16 20 C 0.04 0.97 3.44 30.01 0.10 1.07 16 21 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 22 C 0.03 0.66 6.53 72.14 0.47 1.13 16 23 O -0.30 -6.48 10.42 -82.50 -0.86 -7.34 16 24 C 0.02 0.52 6.49 22.56 0.15 0.67 16 25 C -0.12 -1.95 9.96 22.37 0.22 -1.73 16 26 C -0.11 -1.38 10.04 22.26 0.22 -1.16 16 27 C -0.11 -1.54 10.04 22.26 0.22 -1.32 16 28 C -0.13 -2.67 9.96 22.37 0.22 -2.45 16 29 C 0.02 0.63 6.49 22.56 0.15 0.78 16 30 O -0.31 -9.21 9.62 -69.04 -0.66 -9.87 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 37 H 0.03 1.41 5.57 -2.39 -0.01 1.40 16 38 H 0.02 0.98 6.63 -2.39 -0.02 0.97 16 39 H 0.42 5.68 8.46 -92.71 -0.78 4.89 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.17 1.96 8.09 -2.38 -0.02 1.94 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -85.88 365.22 1.80 -84.08 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.12 Total: 9.59 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.47 Total: 9.03 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.19 Total: -112.92 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.27 Total: -40.21 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.66 Total: 50.42 kcal Total: -85.88 1.80 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080887932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.637 kcal (2) G-P(sol) polarization free energy of solvation -85.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds