Wall clock time and date at job start Tue Mar 31 2020 17:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.91810 * 2 1 4 4 C 1.54909 * 111.00604 * 236.09697 * 2 1 3 5 5 N 1.47420 * 104.83574 * 204.91601 * 4 2 1 6 6 C 1.36933 * 125.65141 * 204.09031 * 5 4 2 7 7 H 1.07997 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.38821 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99986 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46637 * 60.00642 * 10 8 6 12 12 H 1.48500 * 109.46517 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47234 * 300.00290 * 10 8 6 14 14 C 1.47032 * 108.70112 * 24.12955 * 5 4 2 15 15 C 1.54320 * 107.26931 * 358.93986 * 14 5 4 16 16 H 1.09001 * 110.71952 * 96.35280 * 15 14 5 17 17 N 1.46498 * 110.71693 * 219.44488 * 15 14 5 18 18 C 1.34776 * 120.00122 * 273.54623 * 17 15 14 19 19 O 1.21580 * 119.99964 * 0.02562 * 18 17 15 20 20 C 1.47608 * 120.00069 * 180.02562 * 18 17 15 21 21 C 1.39708 * 120.10051 * 359.97438 * 20 18 17 22 22 C 1.37719 * 119.96696 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.27175 * 0.02562 * 22 21 20 24 24 C 1.39265 * 120.04644 * 359.88844 * 23 22 21 25 25 C 1.38291 * 119.95737 * 359.96938 * 24 23 22 26 26 O 1.36146 * 120.76128 * 180.25332 * 24 23 22 27 27 C 1.43162 * 116.71275 * 342.90405 * 26 24 23 28 28 C 1.53471 * 108.23688 * 46.12223 * 27 26 24 29 29 O 1.35963 * 119.23807 * 179.83955 * 23 22 21 30 30 H 1.09000 * 109.47570 * 296.09844 * 1 2 3 31 31 H 1.09004 * 109.47232 * 56.09680 * 1 2 3 32 32 H 1.09005 * 109.47580 * 176.09918 * 1 2 3 33 33 H 1.09000 * 110.36838 * 86.07856 * 4 2 1 34 34 H 1.09005 * 110.45812 * 323.80492 * 4 2 1 35 35 H 0.96995 * 119.99898 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.88058 * 239.52221 * 14 5 4 37 37 H 1.08999 * 110.00728 * 118.43149 * 14 5 4 38 38 H 0.97006 * 120.00053 * 93.54988 * 17 15 14 39 39 H 1.08002 * 120.01369 * 0.05736 * 21 20 18 40 40 H 1.07998 * 119.86493 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.02381 * 179.87602 * 25 24 23 42 42 H 1.08998 * 109.70570 * 286.44111 * 27 26 24 43 43 H 1.08993 * 109.71394 * 165.81411 * 27 26 24 44 44 H 1.08996 * 109.70979 * 180.48983 * 28 27 26 45 45 H 1.09003 * 109.74629 * 59.89022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4639 -1.5667 -1.6071 7 1 4.3333 -1.5118 -2.6778 8 6 5.6830 -1.9655 -1.0762 9 7 5.8421 -2.0329 0.2285 10 14 7.0972 -2.4077 -2.2138 11 1 7.4397 -1.2342 -3.0569 12 1 8.2796 -2.7985 -1.4047 13 1 6.6965 -3.5423 -3.0839 14 6 3.4674 -1.2742 0.6961 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4240 17 7 2.2286 0.0495 2.3815 18 6 2.3021 -0.5004 3.6097 19 8 2.2506 -1.7083 3.7390 20 6 2.4452 0.3636 4.7979 21 6 2.5051 1.7517 4.6517 22 6 2.6391 2.5552 5.7622 23 6 2.7158 1.9909 7.0303 24 6 2.6548 0.6080 7.1830 25 6 2.5174 -0.2040 6.0721 26 8 2.7233 0.0402 8.4185 27 6 3.2288 0.8611 9.4769 28 6 2.5462 2.2329 9.3886 29 8 2.8512 2.8038 8.1117 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1720 -2.0837 34 1 1.4524 -1.6704 -1.4043 35 1 6.6941 -2.3112 0.5994 36 1 4.2425 -0.5998 1.0600 37 1 3.6661 -2.2884 1.0423 38 1 2.2700 1.0132 2.2783 39 1 2.4459 2.1944 3.6684 40 1 2.6857 3.6280 5.6472 41 1 2.4720 -1.2767 6.1891 42 1 4.3068 0.9793 9.3676 43 1 3.0046 0.4002 10.4388 44 1 2.9210 2.8816 10.1803 45 1 1.4674 2.1146 9.4902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080930675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:18 Heat of formation + Delta-G solvation = -50.175923 kcal Electronic energy + Delta-G solvation = -28380.618995 eV Core-core repulsion = 24364.726859 eV Total energy + Delta-G solvation = -4015.892136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51420 -39.72814 -37.90754 -37.54053 -36.94288 -33.93725 -32.67928 -31.48277 -30.88401 -30.34108 -29.07127 -27.50184 -25.62445 -25.28152 -23.91727 -22.92031 -22.04537 -20.52930 -20.04058 -19.60780 -18.90271 -17.81690 -17.48689 -16.89796 -16.36727 -15.84274 -15.67403 -15.28655 -14.95924 -14.69978 -14.34638 -14.32755 -14.05198 -13.98939 -13.70018 -13.46986 -13.13728 -12.79054 -12.76655 -12.58583 -12.06495 -11.93777 -11.66625 -11.40617 -11.34729 -11.30713 -10.98834 -10.76848 -10.73373 -10.57668 -10.38285 -9.94799 -9.90376 -9.68857 -9.55412 -8.86621 -8.58465 -8.49135 -8.26675 -6.79374 -5.64515 -3.00060 0.72997 1.12433 2.63826 2.87542 3.00088 3.43954 3.47882 3.50025 3.55002 3.85143 3.86760 4.33286 4.43873 4.53062 4.54141 4.78846 4.83253 4.96569 5.05044 5.08068 5.18375 5.20060 5.34020 5.46490 5.58675 5.61311 5.78503 5.87837 5.93015 6.00795 6.02175 6.16239 6.17792 6.21673 6.31296 6.38094 6.52203 6.59524 6.65488 6.79908 6.96423 7.12811 7.60762 7.62911 7.89007 7.93986 8.30299 8.58898 9.25950 9.86738 10.51734 11.45857 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.002780 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.276283 B =10068.496997 C =11062.440834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.088 0.912 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.531 6.531 20 C -0.120 4.120 21 C -0.080 4.080 22 C -0.121 4.121 23 C 0.069 3.931 24 C 0.040 3.960 25 C -0.053 4.053 26 O -0.304 6.304 27 C 0.020 3.980 28 C 0.020 3.980 29 O -0.306 6.306 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.395 0.605 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 12.165 17.176 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.017 3.983 16 H 0.106 0.894 17 N -0.357 5.357 18 C 0.345 3.655 19 O -0.409 6.409 20 C -0.124 4.124 21 C -0.099 4.099 22 C -0.139 4.139 23 C 0.023 3.977 24 C -0.005 4.005 25 C -0.072 4.072 26 O -0.219 6.219 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.220 6.220 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.229 0.771 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.840 11.204 17.337 22.868 hybrid contribution 0.983 0.300 -0.287 1.067 sum -8.857 11.505 17.050 22.394 Atomic orbital electron populations 1.21705 0.95012 1.01846 1.00989 1.22612 0.94833 0.99508 0.96390 0.90428 1.21584 0.87669 0.95021 0.94280 1.44405 1.07844 1.79232 1.01805 1.18991 0.89337 1.38795 0.88876 0.90404 1.24834 0.97880 1.01694 0.95990 1.69962 1.24255 1.53075 1.09171 0.86206 0.81898 0.78237 0.79434 1.21222 1.21632 1.21171 1.21481 0.90000 1.00525 0.83268 1.22520 1.00409 0.92699 0.82718 0.89393 1.45822 1.73850 1.10150 1.05842 1.17939 0.76989 0.87641 0.82905 1.90798 1.49636 1.14266 1.86178 1.19773 1.05719 0.93493 0.93381 1.21090 0.98007 0.92120 0.98658 1.20317 1.03968 1.00828 0.88815 1.19122 1.02154 0.88034 0.88369 1.18708 1.05611 0.90133 0.86012 1.20488 0.97581 1.00903 0.88252 1.86354 1.81094 1.39716 1.14745 1.23640 0.99139 0.91639 0.91179 1.23659 1.01228 0.95975 0.84708 1.86273 1.84147 1.37929 1.13645 0.93065 0.92775 0.92552 0.94006 0.96033 0.93675 0.93128 0.93326 0.77053 0.84454 0.84190 0.83295 0.90323 0.85962 0.85986 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.31 37.15 0.35 -1.47 16 2 C -0.11 -1.88 3.25 -88.47 -0.29 -2.17 16 3 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 4 C 0.14 2.87 6.70 -2.53 -0.02 2.85 16 5 N -0.61 -15.68 3.39 -170.07 -0.58 -16.25 16 6 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.85 10.31 55.49 0.57 -27.27 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.17 4.35 5.12 -3.06 -0.02 4.34 16 15 C 0.12 2.34 2.70 -66.10 -0.18 2.16 16 16 H 0.09 1.80 7.59 -51.93 -0.39 1.41 16 17 N -0.71 -11.57 5.08 -53.05 -0.27 -11.84 16 18 C 0.56 9.93 7.76 -12.44 -0.10 9.83 16 19 O -0.53 -11.58 16.06 5.30 0.09 -11.50 16 20 C -0.12 -1.75 5.87 -104.99 -0.62 -2.37 16 21 C -0.08 -0.92 9.53 -39.22 -0.37 -1.29 16 22 C -0.12 -1.30 9.94 -39.49 -0.39 -1.70 16 23 C 0.07 0.81 6.50 -38.91 -0.25 0.56 16 24 C 0.04 0.52 6.49 -39.18 -0.25 0.27 16 25 C -0.05 -0.77 9.50 -39.03 -0.37 -1.14 16 26 O -0.30 -3.57 10.41 -32.95 -0.34 -3.91 16 27 C 0.02 0.14 7.26 37.40 0.27 0.41 16 28 C 0.02 0.13 7.26 37.40 0.27 0.40 16 29 O -0.31 -3.15 10.41 -32.37 -0.34 -3.48 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.05 1.40 7.27 -51.93 -0.38 1.02 16 37 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 38 H 0.39 5.17 6.54 -40.82 -0.27 4.90 16 39 H 0.14 1.24 6.39 -52.49 -0.34 0.90 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.15 2.27 7.64 -52.49 -0.40 1.87 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -35.54 367.70 -8.91 -44.46 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.34 Total: 3.09 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.22 Total: 3.68 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.27 Total: -55.37 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.60 Total: -18.89 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.54 -8.91 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080930675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.719 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds