Wall clock time and date at job start Tue Mar 31 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.91810 * 2 1 4 4 C 1.54909 * 111.00604 * 236.09697 * 2 1 3 5 5 N 1.47420 * 104.83574 * 204.91601 * 4 2 1 6 6 C 1.36933 * 125.65141 * 204.09031 * 5 4 2 7 7 H 1.07997 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.38821 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99986 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46637 * 60.00642 * 10 8 6 12 12 H 1.48500 * 109.46517 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47234 * 300.00290 * 10 8 6 14 14 C 1.47032 * 108.70112 * 24.12955 * 5 4 2 15 15 C 1.54320 * 107.26931 * 358.93986 * 14 5 4 16 16 H 1.09001 * 110.71952 * 96.35280 * 15 14 5 17 17 N 1.46498 * 110.71693 * 219.44488 * 15 14 5 18 18 C 1.34776 * 120.00122 * 273.54623 * 17 15 14 19 19 O 1.21580 * 119.99964 * 0.02562 * 18 17 15 20 20 C 1.47608 * 120.00069 * 180.02562 * 18 17 15 21 21 C 1.39708 * 120.10051 * 359.97438 * 20 18 17 22 22 C 1.37719 * 119.96696 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.27175 * 0.02562 * 22 21 20 24 24 C 1.39265 * 120.04644 * 359.88844 * 23 22 21 25 25 C 1.38291 * 119.95737 * 359.96938 * 24 23 22 26 26 O 1.36146 * 120.76128 * 180.25332 * 24 23 22 27 27 C 1.43162 * 116.71275 * 342.90405 * 26 24 23 28 28 C 1.53471 * 108.23688 * 46.12223 * 27 26 24 29 29 O 1.35963 * 119.23807 * 179.83955 * 23 22 21 30 30 H 1.09000 * 109.47570 * 296.09844 * 1 2 3 31 31 H 1.09004 * 109.47232 * 56.09680 * 1 2 3 32 32 H 1.09005 * 109.47580 * 176.09918 * 1 2 3 33 33 H 1.09000 * 110.36838 * 86.07856 * 4 2 1 34 34 H 1.09005 * 110.45812 * 323.80492 * 4 2 1 35 35 H 0.96995 * 119.99898 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.88058 * 239.52221 * 14 5 4 37 37 H 1.08999 * 110.00728 * 118.43149 * 14 5 4 38 38 H 0.97006 * 120.00053 * 93.54988 * 17 15 14 39 39 H 1.08002 * 120.01369 * 0.05736 * 21 20 18 40 40 H 1.07998 * 119.86493 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.02381 * 179.87602 * 25 24 23 42 42 H 1.08998 * 109.70570 * 286.44111 * 27 26 24 43 43 H 1.08993 * 109.71394 * 165.81411 * 27 26 24 44 44 H 1.08996 * 109.70979 * 180.48983 * 28 27 26 45 45 H 1.09003 * 109.74629 * 59.89022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4639 -1.5667 -1.6071 7 1 4.3333 -1.5118 -2.6778 8 6 5.6830 -1.9655 -1.0762 9 7 5.8421 -2.0329 0.2285 10 14 7.0972 -2.4077 -2.2138 11 1 7.4397 -1.2342 -3.0569 12 1 8.2796 -2.7985 -1.4047 13 1 6.6965 -3.5423 -3.0839 14 6 3.4674 -1.2742 0.6961 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4240 17 7 2.2286 0.0495 2.3815 18 6 2.3021 -0.5004 3.6097 19 8 2.2506 -1.7083 3.7390 20 6 2.4452 0.3636 4.7979 21 6 2.5051 1.7517 4.6517 22 6 2.6391 2.5552 5.7622 23 6 2.7158 1.9909 7.0303 24 6 2.6548 0.6080 7.1830 25 6 2.5174 -0.2040 6.0721 26 8 2.7233 0.0402 8.4185 27 6 3.2288 0.8611 9.4769 28 6 2.5462 2.2329 9.3886 29 8 2.8512 2.8038 8.1117 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1720 -2.0837 34 1 1.4524 -1.6704 -1.4043 35 1 6.6941 -2.3112 0.5994 36 1 4.2425 -0.5998 1.0600 37 1 3.6661 -2.2884 1.0423 38 1 2.2700 1.0132 2.2783 39 1 2.4459 2.1944 3.6684 40 1 2.6857 3.6280 5.6472 41 1 2.4720 -1.2767 6.1891 42 1 4.3068 0.9793 9.3676 43 1 3.0046 0.4002 10.4388 44 1 2.9210 2.8816 10.1803 45 1 1.4674 2.1146 9.4902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080930675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:17 Heat of formation + Delta-G solvation = -75.363053 kcal Electronic energy + Delta-G solvation = -28381.711191 eV Core-core repulsion = 24364.726859 eV Total energy + Delta-G solvation = -4016.984332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35475 -41.11338 -39.35172 -38.34884 -38.16728 -35.68361 -34.35425 -32.37532 -32.11134 -31.83764 -30.13371 -29.03705 -27.35338 -26.18763 -25.40171 -24.13316 -23.09116 -22.03968 -21.56058 -20.92855 -19.84225 -18.88500 -18.81728 -18.31836 -17.60589 -17.20178 -16.85662 -16.51085 -16.09713 -15.89147 -15.68161 -15.54921 -15.41833 -14.94980 -14.89386 -14.73987 -14.43085 -14.31326 -14.05448 -13.76490 -13.52296 -13.32288 -13.02910 -12.89581 -12.82692 -12.56112 -12.28558 -12.22155 -12.02889 -12.02507 -11.84005 -11.64501 -11.55037 -11.44187 -11.05369 -10.73211 -10.08289 -9.78787 -9.22675 -8.92016 -7.83464 -5.21765 -0.31301 0.18354 1.44220 1.48745 1.55043 1.70223 1.88241 2.09644 2.33085 2.50513 2.71779 3.18250 3.34383 3.53526 3.59050 3.69857 3.81052 3.92763 4.00421 4.06031 4.06861 4.10171 4.15235 4.28704 4.48757 4.53797 4.58145 4.63892 4.71013 4.74692 4.90624 4.95760 4.98770 5.08952 5.10332 5.18791 5.21307 5.30995 5.38268 5.45670 5.52303 5.63514 5.79221 5.80985 6.17291 6.28962 6.55937 7.06620 7.23092 7.76661 8.40559 9.25290 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.002780 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.276283 B =10068.496997 C =11062.440834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.096 0.904 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.090 0.910 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.981 3.019 11 H -0.271 1.271 12 H -0.299 1.299 13 H -0.277 1.277 14 C 0.188 3.812 15 C 0.136 3.864 16 H 0.073 0.927 17 N -0.692 5.692 18 C 0.556 3.444 19 O -0.585 6.585 20 C -0.140 4.140 21 C -0.068 4.068 22 C -0.115 4.115 23 C 0.075 3.925 24 C 0.033 3.967 25 C -0.074 4.074 26 O -0.326 6.326 27 C 0.010 3.990 28 C 0.015 3.985 29 O -0.311 6.311 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.243 0.757 36 H 0.018 0.982 37 H -0.012 1.012 38 H 0.414 0.586 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 15.654 17.317 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.809 3.191 11 H -0.196 1.196 12 H -0.225 1.225 13 H -0.203 1.203 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.091 0.909 17 N -0.344 5.344 18 C 0.345 3.655 19 O -0.466 6.466 20 C -0.144 4.144 21 C -0.086 4.086 22 C -0.133 4.133 23 C 0.028 3.972 24 C -0.012 4.012 25 C -0.093 4.093 26 O -0.241 6.241 27 C -0.064 4.064 28 C -0.059 4.059 29 O -0.225 6.225 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.006 0.994 38 H 0.253 0.747 39 H 0.184 0.816 40 H 0.190 0.810 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.088 14.757 17.462 25.409 hybrid contribution 1.349 -0.773 -0.196 1.567 sum -9.738 13.984 17.266 24.259 Atomic orbital electron populations 1.21667 0.91576 1.02294 1.03196 1.22546 0.97370 0.99016 0.92237 0.88534 1.21875 0.85138 0.95826 0.96497 1.44731 1.09571 1.79246 1.01911 1.19484 0.90092 1.37665 0.89844 0.89272 1.25759 1.00807 1.02429 0.97424 1.70245 1.24146 1.54603 1.11184 0.85108 0.78119 0.78411 0.77435 1.19611 1.22516 1.20326 1.21101 0.92694 0.96507 0.83545 1.22097 0.96527 0.93628 0.84748 0.90901 1.45596 1.73254 1.10837 1.04663 1.18521 0.75589 0.87396 0.84023 1.90765 1.52067 1.16765 1.86972 1.19519 1.08639 0.94517 0.91703 1.21339 0.96398 0.90439 1.00441 1.20686 1.02458 1.02262 0.87942 1.19314 1.00707 0.87555 0.89577 1.18688 1.05710 0.90675 0.86124 1.20403 0.99318 1.00199 0.89425 1.86324 1.81343 1.41418 1.15052 1.24042 0.99222 0.92102 0.91084 1.24028 1.01889 0.96120 0.83867 1.86269 1.83823 1.37989 1.14435 0.91179 0.90136 0.93154 0.92416 0.95744 0.94760 0.96411 0.99411 0.74742 0.81645 0.80953 0.85656 0.90280 0.82741 0.82219 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.31 71.98 0.67 -2.30 16 2 C -0.09 -2.87 3.25 -9.40 -0.03 -2.90 16 3 H 0.10 2.70 8.00 -2.39 -0.02 2.68 16 4 C 0.13 5.23 6.70 86.86 0.58 5.81 16 5 N -0.63 -33.25 3.39 -691.97 -2.35 -35.60 16 6 C -0.24 -13.90 10.28 84.04 0.86 -13.04 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 9 N -0.95 -61.00 10.31 21.65 0.22 -60.77 16 10 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.19 10.02 5.12 86.73 0.44 10.46 16 15 C 0.14 5.36 2.70 46.18 0.12 5.48 16 16 H 0.07 3.12 7.59 -2.39 -0.02 3.10 16 17 N -0.69 -22.84 5.08 -440.01 -2.24 -25.08 16 18 C 0.56 20.75 7.76 86.72 0.67 21.42 16 19 O -0.58 -27.67 16.06 -3.97 -0.06 -27.73 16 20 C -0.14 -4.19 5.87 -20.10 -0.12 -4.31 16 21 C -0.07 -1.43 9.53 22.50 0.21 -1.22 16 22 C -0.12 -2.17 9.94 22.33 0.22 -1.95 16 23 C 0.07 1.63 6.50 22.70 0.15 1.78 16 24 C 0.03 0.86 6.49 22.53 0.15 1.01 16 25 C -0.07 -2.28 9.50 22.63 0.22 -2.07 16 26 O -0.33 -7.65 10.41 -83.02 -0.86 -8.51 16 27 C 0.01 0.13 7.26 72.14 0.52 0.65 16 28 C 0.02 0.16 7.26 72.14 0.52 0.68 16 29 O -0.31 -5.52 10.41 -80.94 -0.84 -6.36 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.23 8.08 -2.38 -0.02 1.21 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.02 0.97 7.99 -2.38 -0.02 0.96 16 35 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.02 1.04 7.27 -2.39 -0.02 1.03 16 37 H -0.01 -0.80 7.50 -2.39 -0.02 -0.82 16 38 H 0.41 10.14 6.54 -92.70 -0.61 9.54 16 39 H 0.17 2.44 6.39 -2.91 -0.02 2.43 16 40 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.13 4.33 7.64 -2.91 -0.02 4.31 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.88 367.70 1.97 -82.90 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.41 Total: 16.06 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 5.67 Total: 15.73 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -4.36 Total: -121.45 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.77 Total: -42.61 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.88 1.97 -82.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080930675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.542 kcal (2) G-P(sol) polarization free energy of solvation -84.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds