Wall clock time and date at job start Tue Mar 31 2020 17:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.91605 * 2 1 4 4 C 1.54905 * 111.00753 * 236.09040 * 2 1 3 5 5 N 1.47420 * 104.83193 * 204.91750 * 4 2 1 6 6 C 1.36940 * 125.64533 * 204.09098 * 5 4 2 7 7 H 1.08001 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.38805 * 120.00148 * 0.04434 * 6 5 4 9 9 N 1.31624 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00021 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46645 * 90.00230 * 10 8 6 12 12 H 1.48498 * 109.47208 * 209.99809 * 10 8 6 13 13 H 1.48496 * 109.47196 * 329.99885 * 10 8 6 14 14 C 1.47014 * 108.70609 * 24.12739 * 5 4 2 15 15 C 1.54327 * 107.27055 * 358.94282 * 14 5 4 16 16 H 1.08996 * 110.72208 * 96.34979 * 15 14 5 17 17 N 1.46503 * 110.71726 * 219.44320 * 15 14 5 18 18 C 1.34780 * 120.00011 * 273.54408 * 17 15 14 19 19 O 1.21279 * 119.99845 * 359.97438 * 18 17 15 20 20 C 1.50691 * 120.00054 * 180.02562 * 18 17 15 21 21 C 1.54415 * 129.01374 * 179.97438 * 20 18 17 22 22 C 1.54417 * 78.89586 * 179.35567 * 21 20 18 23 23 C 1.52997 * 129.01647 * 180.64617 * 22 21 20 24 24 F 1.39906 * 109.47023 * 59.99793 * 23 22 21 25 25 F 1.39903 * 109.47385 * 179.97438 * 23 22 21 26 26 F 1.39894 * 109.46988 * 300.00154 * 23 22 21 27 27 C 1.54894 * 84.49242 * 318.13560 * 22 21 20 28 28 C 1.54886 * 84.49253 * 41.86436 * 22 21 20 29 29 H 1.09004 * 109.47566 * 296.10915 * 1 2 3 30 30 H 1.09000 * 109.47170 * 56.10207 * 1 2 3 31 31 H 1.09001 * 109.47373 * 176.10237 * 1 2 3 32 32 H 1.08998 * 110.36403 * 86.07473 * 4 2 1 33 33 H 1.08998 * 110.45805 * 323.80635 * 4 2 1 34 34 H 0.96999 * 120.00346 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.88683 * 239.52068 * 14 5 4 36 36 H 1.09002 * 109.88512 * 118.35552 * 14 5 4 37 37 H 0.97000 * 120.00380 * 93.54637 * 17 15 14 38 38 H 1.09005 * 114.93375 * 66.86666 * 21 20 18 39 39 H 1.08999 * 114.98952 * 291.84267 * 21 20 18 40 40 H 1.09001 * 114.97827 * 154.16911 * 27 22 21 41 41 H 1.08997 * 114.97911 * 289.34528 * 27 22 21 42 42 H 1.09001 * 114.97663 * 70.66214 * 28 22 21 43 43 H 1.09004 * 114.97829 * 205.82989 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2001 5 7 3.4271 -1.2431 -0.7730 6 6 4.4640 -1.5668 -1.6069 7 1 5.4125 -1.8770 -1.1938 8 6 4.2962 -1.4960 -2.9829 9 7 3.1405 -1.1172 -3.4864 10 14 5.7109 -1.9369 -4.1203 11 1 5.6571 -3.3866 -4.4381 12 1 5.6007 -1.1507 -5.3753 13 1 6.9995 -1.6241 -3.4519 14 6 3.4674 -1.2740 0.6962 15 6 2.0860 -0.8077 1.2024 16 1 1.4478 -1.6630 1.4242 17 7 2.2285 0.0499 2.3815 18 6 2.3020 -0.5000 3.6099 19 8 2.2498 -1.7048 3.7390 20 6 2.4480 0.3822 4.8228 21 6 2.5501 -0.0195 6.3103 22 6 2.6552 1.5179 6.4095 23 6 2.8300 2.3932 7.6522 24 9 4.0214 2.0501 8.3004 25 9 2.8773 3.7387 7.2720 26 9 1.7519 2.1910 8.5204 27 6 3.5756 1.3856 5.1707 28 6 1.5293 1.5142 5.3460 29 1 -0.3634 0.4523 0.9228 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1722 -2.0836 33 1 1.4525 -1.6705 -1.4041 34 1 3.0231 -1.0680 -4.4480 35 1 4.2426 -0.5995 1.0602 36 1 3.6649 -2.2892 1.0405 37 1 2.2699 1.0135 2.2783 38 1 3.4576 -0.5604 6.5790 39 1 1.6418 -0.4464 6.7354 40 1 3.6188 2.2686 4.5330 41 1 4.5486 0.9349 5.3662 42 1 0.5550 1.1859 5.7082 43 1 1.4887 2.4024 4.7154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081005752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:14 Heat of formation + Delta-G solvation = -62.210667 kcal Electronic energy + Delta-G solvation = -28935.144975 eV Core-core repulsion = 24376.874234 eV Total energy + Delta-G solvation = -4558.270742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.41563 -47.95993 -47.95302 -42.66221 -39.34508 -37.43225 -34.11769 -32.42365 -30.82009 -28.78976 -27.52640 -26.39019 -26.30855 -25.82528 -24.72761 -23.26987 -21.12849 -20.13548 -19.97883 -18.77921 -18.73906 -18.73106 -17.98661 -16.94881 -16.30453 -15.82654 -15.09721 -15.01758 -14.88305 -14.76378 -14.63409 -14.44897 -14.38299 -14.11058 -14.10800 -14.08466 -13.80540 -13.30435 -12.95832 -12.71291 -12.27823 -12.16780 -12.04345 -11.87141 -11.72093 -11.61279 -11.39754 -11.01823 -10.95612 -10.87260 -10.81621 -10.69347 -10.33227 -10.10271 -9.86162 -9.82747 -9.50367 -8.83511 -8.69235 -6.87755 -5.69179 -3.10961 2.22041 2.38278 3.05537 3.10558 3.16187 3.38601 3.42065 3.44045 3.45569 3.71542 3.89866 4.05624 4.24894 4.25903 4.45872 4.67643 5.02191 5.05774 5.11381 5.22824 5.32732 5.37058 5.39698 5.41504 5.44391 5.51855 5.57376 5.70978 5.88293 6.05550 6.09852 6.33395 6.39233 6.49738 6.58122 6.69651 6.95438 7.44792 7.56425 7.61329 7.80102 8.24370 8.31696 9.18214 9.78601 10.42255 11.34821 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.002447 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.884906 B =11438.431577 C =11890.250895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 H 0.074 0.926 4 C 0.160 3.840 5 N -0.604 5.604 6 C -0.221 4.221 7 H 0.078 0.922 8 C -0.011 4.011 9 N -0.923 5.923 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.128 3.872 15 C 0.136 3.864 16 H 0.093 0.907 17 N -0.705 5.705 18 C 0.575 3.425 19 O -0.527 6.527 20 C -0.149 4.149 21 C -0.062 4.062 22 C -0.225 4.225 23 C 0.523 3.477 24 F -0.175 7.175 25 F -0.176 7.176 26 F -0.176 7.176 27 C -0.076 4.076 28 C -0.072 4.072 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.017 0.983 34 H 0.253 0.747 35 H 0.025 0.975 36 H 0.028 0.972 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 9.557 20.244 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 H 0.092 0.908 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.572 5.572 10 Si 0.746 3.254 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.001 3.999 15 C 0.032 3.968 16 H 0.111 0.889 17 N -0.355 5.355 18 C 0.359 3.641 19 O -0.403 6.403 20 C -0.153 4.153 21 C -0.100 4.100 22 C -0.227 4.227 23 C 0.469 3.531 24 F -0.157 7.157 25 F -0.157 7.157 26 F -0.158 7.158 27 C -0.113 4.113 28 C -0.109 4.109 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.708 8.675 20.115 22.406 hybrid contribution 0.826 0.402 -0.282 0.961 sum -3.882 9.076 19.834 22.154 Atomic orbital electron populations 1.21646 0.95066 1.01801 1.00689 1.22924 0.95115 0.99682 0.96701 0.90801 1.22002 0.84162 0.96064 0.94309 1.44430 1.10575 1.79139 0.98835 1.19084 0.91001 1.37725 0.87156 0.90462 1.24781 0.97351 1.01927 0.96561 1.69762 1.22458 1.53867 1.11107 0.86058 0.81170 0.77892 0.80297 1.21587 1.21636 1.20696 1.21610 0.93737 0.98075 0.86462 1.22231 0.98093 0.93455 0.83063 0.88914 1.45956 1.73341 1.10593 1.05609 1.18298 0.76521 0.87062 0.82253 1.90746 1.49382 1.14234 1.85940 1.23756 0.99771 0.96522 0.95226 1.23675 1.04088 0.90069 0.92184 1.24931 1.04225 0.99493 0.94039 1.18394 0.73746 0.78116 0.82847 1.93209 1.47371 1.92061 1.83030 1.93205 1.96123 1.35201 1.91210 1.93201 1.55859 1.94839 1.71853 1.24119 0.96898 0.98309 0.91987 1.24075 0.96140 0.97468 0.93258 0.93680 0.92425 0.92691 0.87215 0.96520 0.93674 0.95661 0.95447 0.76658 0.88959 0.89001 0.88737 0.88928 0.89024 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.31 37.15 0.35 -1.58 16 2 C -0.12 -2.13 3.25 -88.48 -0.29 -2.41 16 3 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 4 C 0.16 3.70 5.36 -2.53 -0.01 3.68 16 5 N -0.60 -15.22 3.39 -170.08 -0.58 -15.80 16 6 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 10 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.13 2.72 6.99 -3.07 -0.02 2.70 16 15 C 0.14 2.33 2.70 -66.09 -0.18 2.15 16 16 H 0.09 1.71 7.59 -51.93 -0.39 1.32 16 17 N -0.71 -9.37 5.13 -52.03 -0.27 -9.63 16 18 C 0.57 7.87 7.94 -10.99 -0.09 7.78 16 19 O -0.53 -9.45 16.82 5.56 0.09 -9.36 16 20 C -0.15 -1.44 3.43 -172.25 -0.59 -2.03 16 21 C -0.06 -0.55 7.80 -26.71 -0.21 -0.75 16 22 C -0.23 -1.77 2.97 -171.10 -0.51 -2.28 16 23 C 0.52 4.45 3.63 37.16 0.13 4.59 16 24 F -0.18 -1.62 17.32 2.25 0.04 -1.59 16 25 F -0.18 -1.57 17.32 2.25 0.04 -1.53 16 26 F -0.18 -1.59 17.32 2.25 0.04 -1.55 16 27 C -0.08 -0.60 7.82 -28.17 -0.22 -0.82 16 28 C -0.07 -0.52 7.82 -28.18 -0.22 -0.74 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 33 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.03 0.53 8.03 -51.93 -0.42 0.11 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 4.20 8.52 -40.82 -0.35 3.85 16 38 H 0.09 0.80 7.97 -51.93 -0.41 0.38 16 39 H 0.09 0.75 7.97 -51.93 -0.41 0.34 16 40 H 0.09 0.62 7.84 -51.93 -0.41 0.21 16 41 H 0.09 0.73 7.97 -51.93 -0.41 0.32 16 42 H 0.09 0.62 7.97 -51.93 -0.41 0.21 16 43 H 0.09 0.55 7.84 -51.93 -0.41 0.14 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -31.13 365.21 -7.70 -38.82 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.00 Total: 0.42 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.11 Total: 3.61 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.28 Total: -51.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.12 Total: -4.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.13 -7.70 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081005752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.387 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds