Wall clock time and date at job start Tue Mar 31 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.91605 * 2 1 4 4 C 1.54905 * 111.00753 * 236.09040 * 2 1 3 5 5 N 1.47420 * 104.83193 * 204.91750 * 4 2 1 6 6 C 1.36940 * 125.64533 * 204.09098 * 5 4 2 7 7 H 1.08001 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.38805 * 120.00148 * 0.04434 * 6 5 4 9 9 N 1.31624 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00021 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46645 * 90.00230 * 10 8 6 12 12 H 1.48498 * 109.47208 * 209.99809 * 10 8 6 13 13 H 1.48496 * 109.47196 * 329.99885 * 10 8 6 14 14 C 1.47014 * 108.70609 * 24.12739 * 5 4 2 15 15 C 1.54327 * 107.27055 * 358.94282 * 14 5 4 16 16 H 1.08996 * 110.72208 * 96.34979 * 15 14 5 17 17 N 1.46503 * 110.71726 * 219.44320 * 15 14 5 18 18 C 1.34780 * 120.00011 * 273.54408 * 17 15 14 19 19 O 1.21279 * 119.99845 * 359.97438 * 18 17 15 20 20 C 1.50691 * 120.00054 * 180.02562 * 18 17 15 21 21 C 1.54415 * 129.01374 * 179.97438 * 20 18 17 22 22 C 1.54417 * 78.89586 * 179.35567 * 21 20 18 23 23 C 1.52997 * 129.01647 * 180.64617 * 22 21 20 24 24 F 1.39906 * 109.47023 * 59.99793 * 23 22 21 25 25 F 1.39903 * 109.47385 * 179.97438 * 23 22 21 26 26 F 1.39894 * 109.46988 * 300.00154 * 23 22 21 27 27 C 1.54894 * 84.49242 * 318.13560 * 22 21 20 28 28 C 1.54886 * 84.49253 * 41.86436 * 22 21 20 29 29 H 1.09004 * 109.47566 * 296.10915 * 1 2 3 30 30 H 1.09000 * 109.47170 * 56.10207 * 1 2 3 31 31 H 1.09001 * 109.47373 * 176.10237 * 1 2 3 32 32 H 1.08998 * 110.36403 * 86.07473 * 4 2 1 33 33 H 1.08998 * 110.45805 * 323.80635 * 4 2 1 34 34 H 0.96999 * 120.00346 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.88683 * 239.52068 * 14 5 4 36 36 H 1.09002 * 109.88512 * 118.35552 * 14 5 4 37 37 H 0.97000 * 120.00380 * 93.54637 * 17 15 14 38 38 H 1.09005 * 114.93375 * 66.86666 * 21 20 18 39 39 H 1.08999 * 114.98952 * 291.84267 * 21 20 18 40 40 H 1.09001 * 114.97827 * 154.16911 * 27 22 21 41 41 H 1.08997 * 114.97911 * 289.34528 * 27 22 21 42 42 H 1.09001 * 114.97663 * 70.66214 * 28 22 21 43 43 H 1.09004 * 114.97829 * 205.82989 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2001 5 7 3.4271 -1.2431 -0.7730 6 6 4.4640 -1.5668 -1.6069 7 1 5.4125 -1.8770 -1.1938 8 6 4.2962 -1.4960 -2.9829 9 7 3.1405 -1.1172 -3.4864 10 14 5.7109 -1.9369 -4.1203 11 1 5.6571 -3.3866 -4.4381 12 1 5.6007 -1.1507 -5.3753 13 1 6.9995 -1.6241 -3.4519 14 6 3.4674 -1.2740 0.6962 15 6 2.0860 -0.8077 1.2024 16 1 1.4478 -1.6630 1.4242 17 7 2.2285 0.0499 2.3815 18 6 2.3020 -0.5000 3.6099 19 8 2.2498 -1.7048 3.7390 20 6 2.4480 0.3822 4.8228 21 6 2.5501 -0.0195 6.3103 22 6 2.6552 1.5179 6.4095 23 6 2.8300 2.3932 7.6522 24 9 4.0214 2.0501 8.3004 25 9 2.8773 3.7387 7.2720 26 9 1.7519 2.1910 8.5204 27 6 3.5756 1.3856 5.1707 28 6 1.5293 1.5142 5.3460 29 1 -0.3634 0.4523 0.9228 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1722 -2.0836 33 1 1.4525 -1.6705 -1.4041 34 1 3.0231 -1.0680 -4.4480 35 1 4.2426 -0.5995 1.0602 36 1 3.6649 -2.2892 1.0405 37 1 2.2699 1.0135 2.2783 38 1 3.4576 -0.5604 6.5790 39 1 1.6418 -0.4464 6.7354 40 1 3.6188 2.2686 4.5330 41 1 4.5486 0.9349 5.3662 42 1 0.5550 1.1859 5.7082 43 1 1.4887 2.4024 4.7154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081005752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:13 Heat of formation + Delta-G solvation = -80.673498 kcal Electronic energy + Delta-G solvation = -28935.945584 eV Core-core repulsion = 24376.874234 eV Total energy + Delta-G solvation = -4559.071350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.08699 -48.63784 -48.62610 -43.34812 -40.64103 -38.94311 -35.71469 -34.02089 -32.58871 -29.82091 -28.84200 -27.57645 -27.03043 -26.88465 -26.00771 -24.65635 -22.34754 -21.51019 -21.38899 -19.83111 -19.40818 -19.40321 -18.94630 -18.62688 -17.66848 -16.96240 -16.55883 -16.11727 -15.68728 -15.63824 -15.55502 -15.43564 -15.26518 -15.14449 -15.05939 -14.79064 -14.78555 -14.78521 -14.53352 -14.08175 -13.67693 -13.43090 -13.04679 -12.94657 -12.81488 -12.77657 -12.75698 -12.70456 -12.29018 -12.12652 -12.04543 -11.90252 -11.68028 -11.55661 -11.45470 -11.29673 -10.93034 -10.76658 -10.14424 -8.91788 -7.78934 -5.24201 1.36125 1.46887 1.48531 1.53333 1.57255 2.02086 2.48834 2.49151 2.51289 2.73156 3.02699 3.21778 3.30901 3.31756 3.57288 3.60573 3.61757 3.70338 3.85807 4.01947 4.14935 4.41911 4.46555 4.48984 4.64106 4.66699 4.70162 4.77470 4.79198 4.83838 4.84930 4.89085 4.98730 5.06793 5.09685 5.33959 5.45196 5.52895 5.67348 5.79403 6.29643 6.53283 7.09509 7.18864 7.74994 8.37808 9.22250 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.002447 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.884906 B =11438.431577 C =11890.250895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 H 0.090 0.910 4 C 0.161 3.839 5 N -0.624 5.624 6 C -0.243 4.243 7 H 0.075 0.925 8 C -0.061 4.061 9 N -0.945 5.945 10 Si 0.980 3.020 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.271 1.271 14 C 0.127 3.873 15 C 0.155 3.845 16 H 0.080 0.920 17 N -0.692 5.692 18 C 0.577 3.423 19 O -0.575 6.575 20 C -0.165 4.165 21 C -0.068 4.068 22 C -0.217 4.217 23 C 0.527 3.473 24 F -0.181 7.181 25 F -0.176 7.176 26 F -0.179 7.179 27 C -0.069 4.069 28 C -0.056 4.056 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.081 0.919 33 H -0.012 1.012 34 H 0.249 0.751 35 H 0.031 0.969 36 H 0.005 0.995 37 H 0.417 0.583 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 11.591 21.441 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.109 0.891 4 C 0.036 3.964 5 N -0.350 5.350 6 C -0.372 4.372 7 H 0.093 0.907 8 C -0.254 4.254 9 N -0.594 5.594 10 Si 0.808 3.192 11 H -0.216 1.216 12 H -0.215 1.215 13 H -0.196 1.196 14 C 0.000 4.000 15 C 0.049 3.951 16 H 0.098 0.902 17 N -0.343 5.343 18 C 0.364 3.636 19 O -0.454 6.454 20 C -0.169 4.169 21 C -0.106 4.106 22 C -0.218 4.218 23 C 0.472 3.528 24 F -0.163 7.163 25 F -0.158 7.158 26 F -0.160 7.160 27 C -0.106 4.106 28 C -0.093 4.093 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.006 0.994 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.023 0.977 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.006 10.754 21.347 24.421 hybrid contribution 0.948 -0.287 -0.612 1.165 sum -4.058 10.466 20.734 23.578 Atomic orbital electron populations 1.21610 0.92405 1.01781 1.02739 1.22719 0.97098 0.99163 0.93362 0.89130 1.21825 0.83353 0.95133 0.96107 1.44719 1.10770 1.79146 1.00393 1.19403 0.91795 1.37954 0.88079 0.90684 1.25589 0.99802 1.02153 0.97862 1.70004 1.23985 1.54440 1.10979 0.85064 0.78741 0.77239 0.78172 1.21631 1.21489 1.19559 1.21710 0.96547 0.97119 0.84623 1.21736 0.95136 0.93723 0.84471 0.90223 1.45701 1.73067 1.11063 1.04434 1.18840 0.74859 0.86863 0.83053 1.90730 1.51366 1.16646 1.86664 1.23492 1.02471 0.97250 0.93650 1.23767 1.04187 0.91021 0.91604 1.24709 1.04807 0.98477 0.93845 1.18386 0.73432 0.78107 0.82839 1.93201 1.47755 1.92108 1.83205 1.93206 1.96109 1.35263 1.91184 1.93199 1.55968 1.94854 1.72024 1.24184 0.96189 0.98238 0.92001 1.24113 0.95773 0.96896 0.92523 0.90409 0.91686 0.93665 0.90149 0.99424 0.94104 0.95126 0.97701 0.74501 0.89424 0.88657 0.86643 0.89190 0.88212 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.31 71.98 0.67 -2.71 16 2 C -0.10 -3.43 3.25 -9.41 -0.03 -3.46 16 3 H 0.09 2.74 8.00 -2.39 -0.02 2.72 16 4 C 0.16 7.63 5.36 86.85 0.47 8.10 16 5 N -0.62 -32.30 3.39 -692.02 -2.35 -34.64 16 6 C -0.24 -13.78 10.27 84.03 0.86 -12.91 16 7 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 9 N -0.94 -55.12 10.09 21.65 0.22 -54.90 16 10 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.13 5.46 6.99 86.73 0.61 6.07 16 15 C 0.16 5.22 2.70 46.18 0.12 5.35 16 16 H 0.08 2.95 7.59 -2.39 -0.02 2.93 16 17 N -0.69 -16.95 5.13 -436.92 -2.24 -19.19 16 18 C 0.58 14.99 7.94 87.65 0.70 15.68 16 19 O -0.58 -20.63 16.82 -3.03 -0.05 -20.68 16 20 C -0.17 -2.80 3.43 -63.67 -0.22 -3.02 16 21 C -0.07 -1.07 7.80 30.61 0.24 -0.83 16 22 C -0.22 -2.80 2.97 -62.93 -0.19 -2.98 16 23 C 0.53 7.69 3.63 71.98 0.26 7.95 16 24 F -0.18 -3.04 17.32 44.97 0.78 -2.26 16 25 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 26 F -0.18 -2.84 17.32 44.97 0.78 -2.06 16 27 C -0.07 -0.88 7.82 29.66 0.23 -0.65 16 28 C -0.06 -0.60 7.82 29.65 0.23 -0.37 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 32 H 0.08 4.31 5.87 -2.39 -0.01 4.30 16 33 H -0.01 -0.64 7.99 -2.39 -0.02 -0.66 16 34 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.03 1.28 8.03 -2.38 -0.02 1.26 16 36 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.42 7.31 8.52 -92.71 -0.79 6.52 16 38 H 0.09 1.44 7.97 -2.38 -0.02 1.42 16 39 H 0.09 1.42 7.97 -2.39 -0.02 1.40 16 40 H 0.12 1.03 7.84 -2.39 -0.02 1.01 16 41 H 0.09 1.22 7.97 -2.39 -0.02 1.21 16 42 H 0.10 0.97 7.97 -2.39 -0.02 0.96 16 43 H 0.12 0.77 7.84 -2.38 -0.02 0.76 16 Total: -1.00 -70.06 365.21 4.62 -65.44 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.26 Total: 9.50 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.42 Total: 13.24 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.37 Total: -108.73 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 2.34 Total: -6.20 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.06 4.62 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081005752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.229 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds