Wall clock time and date at job start Tue Mar 31 2020 16:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99971 * 2 1 4 4 O 1.42893 * 109.47130 * 135.00411 * 3 2 1 5 5 C 1.35712 * 117.00193 * 179.97438 * 4 3 2 6 6 C 1.38996 * 119.91325 * 179.97438 * 5 4 3 7 7 C 1.37705 * 120.08775 * 180.02562 * 6 5 4 8 8 C 1.39728 * 119.90999 * 0.02562 * 7 6 5 9 9 C 1.47606 * 120.08625 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99892 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99927 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.88427 * 31.11557 * 12 11 9 14 14 C 1.55131 * 111.22809 * 267.20631 * 12 11 9 15 15 N 1.47422 * 104.72316 * 279.17742 * 14 12 11 16 16 C 1.36931 * 125.65211 * 155.81627 * 15 14 12 17 17 H 1.08002 * 120.00103 * 359.71756 * 16 15 14 18 18 C 1.38812 * 120.00429 * 179.71258 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 C 1.47026 * 108.70212 * 335.54953 * 15 14 12 25 25 C 1.54333 * 107.26936 * 1.28776 * 24 15 14 26 26 H 1.08996 * 110.71849 * 263.82777 * 25 24 15 27 27 O 1.42904 * 110.71753 * 140.55578 * 25 24 15 28 28 C 1.39734 * 119.82575 * 0.27033 * 8 7 6 29 29 C 1.37699 * 119.91096 * 359.42844 * 28 8 7 30 30 H 1.08003 * 119.99847 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99725 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00505 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47106 * 15.00018 * 3 2 1 34 34 H 1.09003 * 109.46976 * 255.00100 * 3 2 1 35 35 H 1.08004 * 119.95597 * 0.02562 * 6 5 4 36 36 H 1.08004 * 120.04497 * 180.02562 * 7 6 5 37 37 H 0.97006 * 120.00748 * 359.97438 * 11 9 8 38 38 H 1.08992 * 110.49878 * 160.32991 * 14 12 11 39 39 H 1.09001 * 110.33913 * 37.93950 * 14 12 11 40 40 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.88411 * 120.70256 * 24 15 14 42 42 H 1.08998 * 109.88161 * 241.87725 * 24 15 14 43 43 H 0.96695 * 113.99888 * 61.45570 * 27 25 24 44 44 H 1.08003 * 120.04467 * 179.73041 * 28 8 7 45 45 H 1.08000 * 119.95619 * 180.29576 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9087 2.3434 1.0779 6 6 4.9601 2.3475 1.9870 7 6 5.7555 3.4640 2.1176 8 6 5.5040 4.5939 1.3350 9 6 6.3545 5.7926 1.4713 10 8 7.2750 5.7978 2.2657 11 7 6.1107 6.8814 0.7152 12 6 6.9545 8.0713 0.8509 13 1 7.9727 7.7964 1.1263 14 6 6.3551 9.0712 1.8744 15 7 5.3165 9.7992 1.1229 16 6 4.2283 10.4262 1.6685 17 1 4.0743 10.4083 2.7373 18 6 3.3230 11.0849 0.8479 19 7 3.5104 11.1064 -0.4547 20 14 1.8380 11.9395 1.5921 21 1 1.0325 12.5628 0.5115 22 1 1.0071 10.9457 2.3180 23 1 2.2939 12.9892 2.5386 24 6 5.6462 9.7461 -0.3089 25 6 6.9391 8.9154 -0.4509 26 1 7.8122 9.5661 -0.4990 27 8 6.8730 8.0698 -1.6010 28 6 4.4422 4.5880 0.4267 29 6 3.6553 3.4654 0.2976 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4868 -0.9927 35 1 5.1535 1.4738 2.5918 36 1 6.5726 3.4663 2.8239 37 1 5.3766 6.8772 0.0812 38 1 7.1214 9.7609 2.2279 39 1 5.9107 8.5345 2.7127 40 1 2.8775 11.5664 -1.0282 41 1 4.8358 9.2673 -0.8584 42 1 5.8099 10.7544 -0.6892 43 1 6.7836 8.5485 -2.4364 44 1 4.2420 5.4610 -0.1769 45 1 2.8374 3.4583 -0.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083577227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:27 Heat of formation + Delta-G solvation = -39.990704 kcal Electronic energy + Delta-G solvation = -28068.433467 eV Core-core repulsion = 24052.982995 eV Total energy + Delta-G solvation = -4015.450472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.50811 -39.53946 -38.06049 -37.01243 -35.07698 -34.43797 -33.72968 -31.87000 -31.05678 -30.21978 -28.40412 -27.25160 -26.79549 -24.51259 -23.42520 -22.72262 -20.78196 -20.40112 -20.24070 -19.71439 -18.53042 -17.65065 -16.88765 -16.77651 -16.54757 -16.15594 -15.60309 -15.00455 -14.89154 -14.62812 -14.49877 -14.21455 -13.92288 -13.66364 -13.54756 -13.29403 -13.00685 -12.84002 -12.59478 -12.41467 -12.36866 -11.99896 -11.55406 -11.50563 -11.28723 -11.25684 -10.96550 -10.87290 -10.77355 -10.24664 -10.13012 -9.93452 -9.86040 -9.58772 -9.31389 -9.16216 -8.80014 -8.56161 -8.27662 -6.92444 -5.80028 -3.13366 0.92779 1.25625 1.63857 3.03542 3.04986 3.36310 3.40869 3.41795 3.54114 3.94352 4.38624 4.40734 4.58002 4.60196 4.63678 4.76480 4.87558 5.00386 5.03491 5.19785 5.23494 5.29685 5.40003 5.41565 5.48543 5.53511 5.64576 5.81294 5.86926 6.02516 6.08054 6.10333 6.14817 6.19917 6.25294 6.36319 6.45520 6.56261 6.60210 7.01496 7.15483 7.29075 7.40939 7.68302 7.97064 8.06166 8.14569 8.60799 9.12433 9.72422 10.36429 11.31726 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003083 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.093287 B = 9080.066815 C =10634.481951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.084 3.916 4 O -0.310 6.310 5 C 0.149 3.851 6 C -0.163 4.163 7 C -0.021 4.021 8 C -0.165 4.165 9 C 0.560 3.440 10 O -0.554 6.554 11 N -0.686 5.686 12 C 0.141 3.859 13 H 0.094 0.906 14 C 0.123 3.877 15 N -0.600 5.600 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.150 3.850 25 C 0.063 3.937 26 H 0.068 0.932 27 O -0.563 6.563 28 C -0.038 4.038 29 C -0.217 4.217 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.405 0.595 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.377 0.623 44 H 0.133 0.867 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -18.328 -2.813 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.009 3.991 4 O -0.223 6.223 5 C 0.103 3.897 6 C -0.181 4.181 7 C -0.040 4.040 8 C -0.168 4.168 9 C 0.348 3.652 10 O -0.434 6.434 11 N -0.336 5.336 12 C 0.035 3.965 13 H 0.112 0.888 14 C -0.004 4.004 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.211 1.211 24 C 0.025 3.975 25 C 0.003 3.997 26 H 0.085 0.915 27 O -0.368 6.368 28 C -0.057 4.057 29 C -0.236 4.236 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.242 0.758 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.224 0.776 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.032 -18.814 -1.801 18.900 hybrid contribution -1.446 1.242 -0.633 2.009 sum -1.478 -17.571 -2.434 17.801 Atomic orbital electron populations 1.23919 0.95444 1.02700 0.98664 1.22658 0.95660 0.97713 1.01468 1.21892 0.87898 0.97022 0.92299 1.86034 1.41998 1.35807 1.58484 1.19227 0.90583 0.85648 0.94219 1.20360 0.96214 1.00200 1.01365 1.21068 0.97051 0.90190 0.95708 1.19926 0.99289 0.95854 1.01742 1.18077 0.83851 0.82717 0.80602 1.90728 1.31930 1.83417 1.37371 1.45432 1.34107 1.12975 1.41054 1.22224 0.94644 0.84683 0.94979 0.88764 1.22064 0.91998 0.92189 0.94177 1.44314 1.24751 1.62339 1.01405 1.19030 0.98435 1.25949 0.91960 0.90366 1.24780 0.99180 1.00841 0.95593 1.69916 1.37532 1.47736 1.02111 0.86172 0.82341 0.79377 0.77731 1.21598 1.21168 1.21137 1.21867 0.91510 0.97552 0.86611 1.23573 0.99795 0.91653 0.84688 0.91458 1.86407 1.96868 1.36825 1.16677 1.21205 0.92087 0.97392 0.95001 1.21162 1.04088 0.94094 1.04226 0.87409 0.88083 0.86237 0.91093 0.90707 0.84654 0.83935 0.75841 0.94915 0.93154 0.93703 0.92521 0.93493 0.77585 0.84917 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 14.31 29.01 0.42 -0.61 16 2 C -0.16 -1.13 9.89 -36.02 -0.36 -1.48 16 3 C 0.08 0.70 5.15 36.01 0.19 0.88 16 4 O -0.31 -3.42 10.11 -18.84 -0.19 -3.61 16 5 C 0.15 1.79 6.70 -39.02 -0.26 1.53 16 6 C -0.16 -1.95 9.97 -39.50 -0.39 -2.34 16 7 C -0.02 -0.29 9.58 -39.22 -0.38 -0.66 16 8 C -0.16 -2.50 5.87 -104.96 -0.62 -3.12 16 9 C 0.56 10.07 7.76 -12.44 -0.10 9.97 16 10 O -0.55 -11.29 15.98 5.29 0.08 -11.21 16 11 N -0.69 -12.32 4.76 -52.63 -0.25 -12.57 16 12 C 0.14 2.63 3.31 -65.66 -0.22 2.41 16 13 H 0.09 1.73 7.54 -51.93 -0.39 1.33 16 14 C 0.12 2.59 6.95 -2.41 -0.02 2.57 16 15 N -0.60 -14.72 3.39 -169.93 -0.58 -15.30 16 16 C -0.23 -6.12 10.28 -15.06 -0.15 -6.28 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 19 N -0.93 -25.89 10.31 55.49 0.57 -25.32 16 20 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.36 5.13 -3.06 -0.02 3.35 16 25 C 0.06 1.13 4.12 -24.89 -0.10 1.02 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 O -0.56 -8.97 12.67 -35.23 -0.45 -9.41 16 28 C -0.04 -0.51 9.53 -39.22 -0.37 -0.89 16 29 C -0.22 -2.56 9.01 -39.50 -0.36 -2.91 16 30 H 0.11 0.50 8.06 -52.48 -0.42 0.07 16 31 H 0.10 0.56 7.90 -52.49 -0.41 0.14 16 32 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.07 0.55 7.37 -51.93 -0.38 0.17 16 34 H 0.07 0.54 7.65 -51.93 -0.40 0.15 16 35 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.14 1.85 7.64 -52.48 -0.40 1.45 16 37 H 0.41 7.11 6.41 -40.82 -0.26 6.84 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.06 1.40 7.30 -51.93 -0.38 1.02 16 42 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 43 H 0.38 4.60 9.11 45.56 0.42 5.02 16 44 H 0.13 1.72 6.40 -52.48 -0.34 1.38 16 45 H 0.13 1.25 6.28 -52.49 -0.33 0.92 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -32.33 376.99 -8.33 -40.66 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.35 Total: 11.32 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.83 Total: 3.12 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.26 Total: -53.18 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.55 Total: -24.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.33 -8.33 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083577227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.667 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds