Wall clock time and date at job start Tue Mar 31 2020 16:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99971 * 2 1 4 4 O 1.42893 * 109.47130 * 135.00411 * 3 2 1 5 5 C 1.35712 * 117.00193 * 179.97438 * 4 3 2 6 6 C 1.38996 * 119.91325 * 179.97438 * 5 4 3 7 7 C 1.37705 * 120.08775 * 180.02562 * 6 5 4 8 8 C 1.39728 * 119.90999 * 0.02562 * 7 6 5 9 9 C 1.47606 * 120.08625 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99892 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99927 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.88427 * 31.11557 * 12 11 9 14 14 C 1.55131 * 111.22809 * 267.20631 * 12 11 9 15 15 N 1.47422 * 104.72316 * 279.17742 * 14 12 11 16 16 C 1.36931 * 125.65211 * 155.81627 * 15 14 12 17 17 H 1.08002 * 120.00103 * 359.71756 * 16 15 14 18 18 C 1.38812 * 120.00429 * 179.71258 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 C 1.47026 * 108.70212 * 335.54953 * 15 14 12 25 25 C 1.54333 * 107.26936 * 1.28776 * 24 15 14 26 26 H 1.08996 * 110.71849 * 263.82777 * 25 24 15 27 27 O 1.42904 * 110.71753 * 140.55578 * 25 24 15 28 28 C 1.39734 * 119.82575 * 0.27033 * 8 7 6 29 29 C 1.37699 * 119.91096 * 359.42844 * 28 8 7 30 30 H 1.08003 * 119.99847 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99725 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00505 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47106 * 15.00018 * 3 2 1 34 34 H 1.09003 * 109.46976 * 255.00100 * 3 2 1 35 35 H 1.08004 * 119.95597 * 0.02562 * 6 5 4 36 36 H 1.08004 * 120.04497 * 180.02562 * 7 6 5 37 37 H 0.97006 * 120.00748 * 359.97438 * 11 9 8 38 38 H 1.08992 * 110.49878 * 160.32991 * 14 12 11 39 39 H 1.09001 * 110.33913 * 37.93950 * 14 12 11 40 40 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.88411 * 120.70256 * 24 15 14 42 42 H 1.08998 * 109.88161 * 241.87725 * 24 15 14 43 43 H 0.96695 * 113.99888 * 61.45570 * 27 25 24 44 44 H 1.08003 * 120.04467 * 179.73041 * 28 8 7 45 45 H 1.08000 * 119.95619 * 180.29576 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9087 2.3434 1.0779 6 6 4.9601 2.3475 1.9870 7 6 5.7555 3.4640 2.1176 8 6 5.5040 4.5939 1.3350 9 6 6.3545 5.7926 1.4713 10 8 7.2750 5.7978 2.2657 11 7 6.1107 6.8814 0.7152 12 6 6.9545 8.0713 0.8509 13 1 7.9727 7.7964 1.1263 14 6 6.3551 9.0712 1.8744 15 7 5.3165 9.7992 1.1229 16 6 4.2283 10.4262 1.6685 17 1 4.0743 10.4083 2.7373 18 6 3.3230 11.0849 0.8479 19 7 3.5104 11.1064 -0.4547 20 14 1.8380 11.9395 1.5921 21 1 1.0325 12.5628 0.5115 22 1 1.0071 10.9457 2.3180 23 1 2.2939 12.9892 2.5386 24 6 5.6462 9.7461 -0.3089 25 6 6.9391 8.9154 -0.4509 26 1 7.8122 9.5661 -0.4990 27 8 6.8730 8.0698 -1.6010 28 6 4.4422 4.5880 0.4267 29 6 3.6553 3.4654 0.2976 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4868 -0.9927 35 1 5.1535 1.4738 2.5918 36 1 6.5726 3.4663 2.8239 37 1 5.3766 6.8772 0.0812 38 1 7.1214 9.7609 2.2279 39 1 5.9107 8.5345 2.7127 40 1 2.8775 11.5664 -1.0282 41 1 4.8358 9.2673 -0.8584 42 1 5.8099 10.7544 -0.6892 43 1 6.7836 8.5485 -2.4364 44 1 4.2420 5.4610 -0.1769 45 1 2.8374 3.4583 -0.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083577227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:26 Heat of formation + Delta-G solvation = -62.452153 kcal Electronic energy + Delta-G solvation = -28069.407468 eV Core-core repulsion = 24052.982995 eV Total energy + Delta-G solvation = -4016.424473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57444 -40.79114 -39.45676 -38.12653 -36.61786 -35.34653 -35.00491 -33.62207 -32.12948 -31.38084 -30.06091 -28.79742 -27.64318 -26.34925 -24.59076 -23.70438 -22.31950 -21.87046 -21.20908 -20.83839 -19.52292 -19.07406 -18.51822 -18.14264 -17.55452 -17.16685 -16.88153 -16.47984 -16.11437 -15.99778 -15.73548 -15.58043 -15.22388 -14.98779 -14.51816 -14.42293 -14.28617 -14.00796 -13.94863 -13.77141 -13.48759 -13.36311 -13.12417 -13.10134 -12.73578 -12.54569 -12.20467 -12.17810 -12.06290 -11.90792 -11.80318 -11.70239 -11.02776 -10.84176 -10.76080 -10.45491 -10.14191 -10.09680 -9.31106 -8.90156 -7.86803 -5.21800 -0.15159 0.27851 1.11536 1.46638 1.48283 1.54667 1.82334 2.17290 2.28931 2.47612 2.81026 3.15342 3.33917 3.58417 3.64380 3.74032 3.79559 3.88261 3.93119 3.96587 4.07645 4.14382 4.28258 4.34843 4.37545 4.52123 4.56605 4.57673 4.63948 4.83336 4.88286 4.91266 4.95682 5.07194 5.19031 5.32798 5.40435 5.48017 5.50848 5.57591 5.61095 5.69589 5.69960 6.15602 6.29184 6.56941 6.87111 7.08293 7.20817 7.72344 8.35840 9.22476 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003083 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.093287 B = 9080.066815 C =10634.481951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.075 3.925 4 O -0.316 6.316 5 C 0.154 3.846 6 C -0.162 4.162 7 C -0.025 4.025 8 C -0.190 4.190 9 C 0.558 3.442 10 O -0.584 6.584 11 N -0.687 5.687 12 C 0.146 3.854 13 H 0.103 0.897 14 C 0.123 3.877 15 N -0.617 5.617 16 C -0.243 4.243 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.945 5.945 20 Si 0.975 3.025 21 H -0.291 1.291 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.162 3.838 25 C 0.086 3.914 26 H 0.091 0.909 27 O -0.562 6.562 28 C -0.041 4.041 29 C -0.215 4.215 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.248 0.752 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.396 0.604 44 H 0.134 0.866 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -19.761 -3.175 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C 0.001 3.999 4 O -0.229 6.229 5 C 0.107 3.893 6 C -0.180 4.180 7 C -0.044 4.044 8 C -0.193 4.193 9 C 0.348 3.652 10 O -0.467 6.467 11 N -0.336 5.336 12 C 0.039 3.961 13 H 0.121 0.879 14 C -0.004 4.004 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.093 0.907 18 C -0.250 4.250 19 N -0.593 5.593 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.037 3.963 25 C 0.025 3.975 26 H 0.109 0.891 27 O -0.369 6.369 28 C -0.060 4.060 29 C -0.233 4.233 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.174 0.826 36 H 0.160 0.840 37 H 0.243 0.757 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.246 0.754 44 H 0.151 0.849 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.836 -20.263 -2.180 20.397 hybrid contribution -1.276 1.586 -0.533 2.104 sum -2.111 -18.677 -2.713 18.991 Atomic orbital electron populations 1.24134 0.95142 1.03706 0.96756 1.22682 0.96076 0.97333 1.03206 1.22148 0.87424 0.98038 0.92240 1.86042 1.42405 1.35258 1.59198 1.19353 0.90374 0.85901 0.93628 1.20559 0.95773 1.00258 1.01440 1.21121 0.97429 0.90262 0.95541 1.19824 1.00242 0.95397 1.03821 1.18521 0.83671 0.83288 0.79760 1.90696 1.33358 1.84046 1.38588 1.45444 1.34089 1.12865 1.41163 1.22121 0.94865 0.84486 0.94586 0.87880 1.22147 0.91423 0.92587 0.94235 1.44518 1.24907 1.62381 1.02656 1.19313 0.99522 1.26203 0.92132 0.90683 1.25513 1.01659 1.01750 0.96097 1.70102 1.38061 1.48223 1.02924 0.85213 0.79231 0.78323 0.76901 1.21717 1.20673 1.20688 1.21652 0.92962 0.96521 0.85187 1.23260 0.97968 0.91040 0.85222 0.89146 1.86380 1.96675 1.36734 1.17097 1.21247 0.91927 0.98116 0.94720 1.21383 1.04216 0.93311 1.04388 0.85930 0.87599 0.85959 0.90469 0.89635 0.82583 0.83962 0.75682 0.93835 0.94652 0.94234 0.95192 0.96323 0.75431 0.84856 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 14.31 67.78 0.97 -0.59 16 2 C -0.17 -2.16 9.89 25.65 0.25 -1.90 16 3 C 0.08 1.09 5.15 71.24 0.37 1.46 16 4 O -0.32 -6.31 10.11 -90.33 -0.91 -7.22 16 5 C 0.15 3.41 6.70 22.63 0.15 3.56 16 6 C -0.16 -3.64 9.97 22.33 0.22 -3.41 16 7 C -0.02 -0.65 9.58 22.50 0.22 -0.44 16 8 C -0.19 -5.73 5.87 -20.08 -0.12 -5.85 16 9 C 0.56 20.20 7.76 86.72 0.67 20.88 16 10 O -0.58 -24.07 15.98 -3.99 -0.06 -24.13 16 11 N -0.69 -24.65 4.76 -438.68 -2.09 -26.74 16 12 C 0.15 5.37 3.31 46.46 0.15 5.53 16 13 H 0.10 3.67 7.54 -2.38 -0.02 3.66 16 14 C 0.12 5.19 6.95 86.93 0.60 5.80 16 15 N -0.62 -30.67 3.39 -691.54 -2.35 -33.01 16 16 C -0.24 -13.36 10.28 84.03 0.86 -12.50 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.06 -3.11 5.49 84.86 0.47 -2.65 16 19 N -0.94 -53.64 10.31 21.65 0.22 -53.41 16 20 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C 0.16 7.35 5.13 86.73 0.45 7.80 16 25 C 0.09 2.97 4.12 31.79 0.13 3.10 16 26 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 27 O -0.56 -17.01 12.67 -148.98 -1.89 -18.90 16 28 C -0.04 -1.08 9.53 22.50 0.21 -0.87 16 29 C -0.21 -4.69 9.01 22.32 0.20 -4.49 16 30 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.11 0.91 7.90 -2.91 -0.02 0.89 16 32 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.08 1.01 7.37 -2.39 -0.02 1.00 16 34 H 0.09 1.04 7.65 -2.39 -0.02 1.02 16 35 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.14 3.70 7.64 -2.91 -0.02 3.68 16 37 H 0.41 14.30 6.41 -92.70 -0.59 13.70 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.25 13.80 8.31 -92.70 -0.77 13.02 16 41 H 0.03 1.51 7.30 -2.39 -0.02 1.49 16 42 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16 43 H 0.40 8.94 9.11 -74.06 -0.67 8.27 16 44 H 0.13 3.41 6.40 -2.91 -0.02 3.39 16 45 H 0.16 2.57 6.28 -2.91 -0.02 2.56 16 Total: -1.00 -69.47 376.99 0.52 -68.95 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.24 Total: 32.27 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.81 Total: 15.42 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.21 Total: -113.17 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.86 Total: -50.24 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.47 0.52 -68.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083577227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.500 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds