Wall clock time and date at job start Tue Mar 31 2020 17:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.67539 * 2 1 4 4 C 1.54719 * 110.75608 * 123.22610 * 2 1 3 5 5 C 1.51677 * 101.89575 * 93.10151 * 4 2 1 6 6 C 1.37707 * 132.12708 * 195.49306 * 5 4 2 7 7 C 1.38595 * 120.32375 * 179.43132 * 6 5 4 8 8 C 1.37829 * 119.97474 * 359.93084 * 7 6 5 9 9 C 1.39490 * 120.18190 * 0.20495 * 8 7 6 10 10 C 1.47542 * 120.05141 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99700 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99731 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99609 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.89356 * 31.11764 * 13 12 10 15 15 C 1.55129 * 111.22189 * 267.20598 * 13 12 10 16 16 N 1.47430 * 104.72418 * 279.17849 * 15 13 12 17 17 C 1.36931 * 125.64889 * 155.81803 * 16 15 13 18 18 H 1.08002 * 120.00438 * 359.72027 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.43985 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.47027 * 108.69819 * 335.55342 * 16 15 13 26 26 C 1.54324 * 107.27233 * 1.28428 * 25 16 15 27 27 H 1.08997 * 110.72037 * 263.65355 * 26 25 16 28 28 O 1.42898 * 110.71633 * 140.55508 * 26 25 16 29 29 C 1.38833 * 107.00384 * 15.48506 * 5 4 2 30 30 O 1.35856 * 111.31492 * 0.85000 * 29 5 4 31 31 H 1.09000 * 109.47049 * 296.77411 * 1 2 3 32 32 H 1.08992 * 109.47242 * 56.77116 * 1 2 3 33 33 H 1.08998 * 109.47063 * 176.77381 * 1 2 3 34 34 H 1.09001 * 110.94293 * 334.94996 * 4 2 1 35 35 H 1.08994 * 110.94452 * 211.25248 * 4 2 1 36 36 H 1.08006 * 119.83539 * 359.39982 * 6 5 4 37 37 H 1.07999 * 120.01525 * 179.90909 * 7 6 5 38 38 H 1.07995 * 119.91484 * 180.18290 * 8 7 6 39 39 H 0.96992 * 120.00502 * 0.02562 * 12 10 9 40 40 H 1.08999 * 110.49618 * 160.33711 * 15 13 12 41 41 H 1.09003 * 110.34997 * 37.94092 * 15 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.87929 * 120.70863 * 25 16 15 44 44 H 1.09004 * 109.88144 * 241.87171 * 25 16 15 45 45 H 0.96703 * 114.00290 * 61.45340 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7927 1.2102 5 6 2.2641 -2.1771 0.6189 6 6 2.4537 -3.4115 1.1991 7 6 2.5870 -4.5427 0.4095 8 6 2.5286 -4.4351 -0.9633 9 6 2.3399 -3.1892 -1.5617 10 6 2.2773 -3.0774 -3.0315 11 8 2.1132 -1.9909 -3.5520 12 7 2.4031 -4.1794 -3.7971 13 6 2.3415 -4.0682 -5.2566 14 1 2.7312 -3.1065 -5.5899 15 6 0.8968 -4.2901 -5.7762 16 7 0.7294 -5.7547 -5.8040 17 6 -0.4639 -6.4229 -5.7373 18 1 -1.3882 -5.8707 -5.6519 19 6 -0.4862 -7.8101 -5.7851 20 7 0.6401 -8.4831 -5.8892 21 14 -2.1146 -8.7215 -5.7018 22 1 -2.6454 -8.9133 -7.0754 23 1 -1.9087 -10.0454 -5.0613 24 1 -3.0843 -7.9303 -4.9024 25 6 2.0555 -6.3785 -5.9217 26 6 3.0976 -5.2404 -5.9361 27 1 3.3740 -4.9834 -6.9586 28 8 4.2532 -5.6035 -5.1780 29 6 2.2145 -2.0389 -0.7616 30 8 2.0394 -0.7408 -1.1220 31 1 -0.3633 0.4629 0.9175 32 1 -0.3633 0.5631 -0.8596 33 1 -0.3633 -1.0260 -0.0578 34 1 1.3539 -0.8109 2.0246 35 1 3.0301 -0.3816 1.5464 36 1 2.4991 -3.4985 2.2747 37 1 2.7369 -5.5082 0.8697 38 1 2.6297 -5.3176 -1.5775 39 1 2.5344 -5.0461 -3.3819 40 1 0.7838 -3.8763 -6.7782 41 1 0.1754 -3.8388 -5.0949 42 1 0.6246 -9.4524 -5.9222 43 1 2.2338 -7.0338 -5.0692 44 1 2.1161 -6.9483 -6.8490 45 1 4.7183 -6.3804 -5.5176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083651280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:55 Heat of formation + Delta-G solvation = -54.642104 kcal Electronic energy + Delta-G solvation = -29158.341234 eV Core-core repulsion = 25142.255430 eV Total energy + Delta-G solvation = -4016.085804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.39826 -39.45804 -37.86962 -37.15611 -35.03768 -33.62566 -33.22245 -31.79810 -30.85575 -30.27862 -28.37189 -27.12289 -26.87115 -24.57673 -23.62248 -22.15831 -21.72923 -20.62808 -20.29360 -19.60834 -17.68391 -17.16939 -16.83044 -16.66063 -16.42968 -16.04675 -15.47322 -15.09353 -14.67314 -14.46022 -14.19179 -13.93564 -13.81514 -13.53049 -13.38858 -12.94794 -12.83325 -12.61385 -12.41152 -12.37832 -12.22599 -11.95476 -11.83672 -11.53292 -11.38934 -11.22935 -11.14792 -10.95084 -10.87138 -10.72859 -10.20035 -10.07591 -9.83433 -9.44172 -9.26946 -8.99125 -8.74628 -8.43548 -8.18589 -6.89201 -5.77476 -3.10546 0.88202 1.25918 3.05010 3.20176 3.37340 3.43063 3.44467 3.56865 3.92346 4.19205 4.34593 4.43369 4.61235 4.67463 4.74490 4.96637 4.97477 5.03784 5.20241 5.26133 5.31431 5.38344 5.43603 5.46124 5.52762 5.59356 5.62444 5.68735 5.85044 5.85943 5.95457 6.13036 6.15183 6.20567 6.31290 6.33655 6.49677 6.53101 6.64131 7.06984 7.12835 7.32625 7.44252 7.71313 8.04198 8.10371 8.17436 8.70485 9.15237 9.75197 10.39526 11.34405 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003437 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.008158 B = 8144.444464 C = 8609.327862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.116 0.884 4 C -0.103 4.103 5 C -0.191 4.191 6 C -0.049 4.049 7 C -0.157 4.157 8 C -0.047 4.047 9 C -0.149 4.149 10 C 0.556 3.444 11 O -0.539 6.539 12 N -0.688 5.688 13 C 0.142 3.858 14 H 0.094 0.906 15 C 0.123 3.877 16 N -0.600 5.600 17 C -0.225 4.225 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.150 3.850 26 C 0.064 3.936 27 H 0.067 0.933 28 O -0.563 6.563 29 C 0.168 3.832 30 O -0.271 6.271 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.405 0.595 40 H 0.033 0.967 41 H 0.050 0.950 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 11.204 14.251 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.134 0.866 4 C -0.140 4.140 5 C -0.192 4.192 6 C -0.067 4.067 7 C -0.175 4.175 8 C -0.066 4.066 9 C -0.153 4.153 10 C 0.343 3.657 11 O -0.417 6.417 12 N -0.338 5.338 13 C 0.036 3.964 14 H 0.111 0.889 15 C -0.004 4.004 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.025 3.975 26 C 0.003 3.997 27 H 0.085 0.915 28 O -0.368 6.368 29 C 0.120 3.880 30 O -0.183 6.183 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.241 0.759 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.846 12.400 13.989 19.586 hybrid contribution -0.706 -1.615 -0.050 1.763 sum 5.140 10.786 13.939 18.358 Atomic orbital electron populations 1.22238 0.94064 1.03518 1.02977 1.23505 0.95035 0.96577 0.83498 0.86627 1.21860 1.02531 0.91144 0.98471 1.20744 1.09276 0.95785 0.93414 1.20425 0.95942 0.90445 0.99933 1.20959 1.04598 0.98716 0.93233 1.21211 0.94343 0.95655 0.95401 1.19352 1.11577 0.91127 0.93265 1.17993 0.77161 0.84447 0.86119 1.90779 1.49698 1.26859 1.74371 1.45407 1.72189 1.09887 1.06350 1.22187 0.96529 0.97998 0.79664 0.88855 1.22065 0.93431 0.87113 0.97815 1.44321 1.02602 0.99021 1.86851 1.19082 0.84064 0.89014 1.43149 0.90341 1.24768 0.97231 0.96169 1.02184 1.69923 1.24020 1.06198 1.57115 0.86107 0.82759 0.79205 0.77640 1.21605 1.21673 1.20696 1.21868 0.82787 0.91136 1.01755 1.23569 0.86261 0.96432 0.93393 0.91519 1.86412 1.41908 1.51318 1.57124 1.19428 0.92051 0.84749 0.91749 1.87063 1.78379 1.15919 1.36957 0.90814 0.91086 0.91766 0.88974 0.89161 0.85575 0.84829 0.84428 0.75931 0.94975 0.93201 0.93765 0.92497 0.93501 0.77623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.51 37.15 0.35 -1.28 16 2 C 0.07 0.73 4.32 -25.83 -0.11 0.62 16 3 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.10 -0.91 6.65 -26.50 -0.18 -1.09 16 5 C -0.19 -2.30 6.26 -104.11 -0.65 -2.95 16 6 C -0.05 -0.52 10.02 -39.64 -0.40 -0.91 16 7 C -0.16 -1.76 10.05 -39.60 -0.40 -2.16 16 8 C -0.05 -0.65 9.51 -39.26 -0.37 -1.03 16 9 C -0.15 -2.47 5.89 -104.72 -0.62 -3.09 16 10 C 0.56 10.77 7.76 -12.47 -0.10 10.68 16 11 O -0.54 -11.96 15.51 -10.28 -0.16 -12.12 16 12 N -0.69 -12.92 4.76 -52.65 -0.25 -13.17 16 13 C 0.14 2.76 3.31 -65.66 -0.22 2.54 16 14 H 0.09 1.79 7.54 -51.93 -0.39 1.40 16 15 C 0.12 2.66 6.95 -2.41 -0.02 2.65 16 16 N -0.60 -14.95 3.39 -169.92 -0.58 -15.53 16 17 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.08 10.31 55.49 0.57 -25.51 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.42 5.13 -3.06 -0.02 3.40 16 26 C 0.06 1.17 4.12 -24.90 -0.10 1.07 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 O -0.56 -9.24 12.67 -35.23 -0.45 -9.68 16 29 C 0.17 2.61 6.61 -38.44 -0.25 2.36 16 30 O -0.27 -4.28 9.84 -34.86 -0.34 -4.62 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.14 1.80 6.37 -52.49 -0.33 1.47 16 39 H 0.40 7.33 6.40 -40.82 -0.26 7.07 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.06 1.42 7.30 -51.93 -0.38 1.04 16 44 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 45 H 0.38 4.74 9.11 45.56 0.42 5.16 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -34.11 368.69 -9.52 -43.63 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.52 Total: 10.50 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.33 Total: 4.15 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.26 Total: -54.21 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.95 Total: -26.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.11 -9.52 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083651280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.015 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds