Wall clock time and date at job start Tue Mar 31 2020 17:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.67539 * 2 1 4 4 C 1.54719 * 110.75608 * 123.22610 * 2 1 3 5 5 C 1.51677 * 101.89575 * 93.10151 * 4 2 1 6 6 C 1.37707 * 132.12708 * 195.49306 * 5 4 2 7 7 C 1.38595 * 120.32375 * 179.43132 * 6 5 4 8 8 C 1.37829 * 119.97474 * 359.93084 * 7 6 5 9 9 C 1.39490 * 120.18190 * 0.20495 * 8 7 6 10 10 C 1.47542 * 120.05141 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99700 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99731 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99609 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.89356 * 31.11764 * 13 12 10 15 15 C 1.55129 * 111.22189 * 267.20598 * 13 12 10 16 16 N 1.47430 * 104.72418 * 279.17849 * 15 13 12 17 17 C 1.36931 * 125.64889 * 155.81803 * 16 15 13 18 18 H 1.08002 * 120.00438 * 359.72027 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.43985 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.47027 * 108.69819 * 335.55342 * 16 15 13 26 26 C 1.54324 * 107.27233 * 1.28428 * 25 16 15 27 27 H 1.08997 * 110.72037 * 263.65355 * 26 25 16 28 28 O 1.42898 * 110.71633 * 140.55508 * 26 25 16 29 29 C 1.38833 * 107.00384 * 15.48506 * 5 4 2 30 30 O 1.35856 * 111.31492 * 0.85000 * 29 5 4 31 31 H 1.09000 * 109.47049 * 296.77411 * 1 2 3 32 32 H 1.08992 * 109.47242 * 56.77116 * 1 2 3 33 33 H 1.08998 * 109.47063 * 176.77381 * 1 2 3 34 34 H 1.09001 * 110.94293 * 334.94996 * 4 2 1 35 35 H 1.08994 * 110.94452 * 211.25248 * 4 2 1 36 36 H 1.08006 * 119.83539 * 359.39982 * 6 5 4 37 37 H 1.07999 * 120.01525 * 179.90909 * 7 6 5 38 38 H 1.07995 * 119.91484 * 180.18290 * 8 7 6 39 39 H 0.96992 * 120.00502 * 0.02562 * 12 10 9 40 40 H 1.08999 * 110.49618 * 160.33711 * 15 13 12 41 41 H 1.09003 * 110.34997 * 37.94092 * 15 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.87929 * 120.70863 * 25 16 15 44 44 H 1.09004 * 109.88144 * 241.87171 * 25 16 15 45 45 H 0.96703 * 114.00290 * 61.45340 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7927 1.2102 5 6 2.2641 -2.1771 0.6189 6 6 2.4537 -3.4115 1.1991 7 6 2.5870 -4.5427 0.4095 8 6 2.5286 -4.4351 -0.9633 9 6 2.3399 -3.1892 -1.5617 10 6 2.2773 -3.0774 -3.0315 11 8 2.1132 -1.9909 -3.5520 12 7 2.4031 -4.1794 -3.7971 13 6 2.3415 -4.0682 -5.2566 14 1 2.7312 -3.1065 -5.5899 15 6 0.8968 -4.2901 -5.7762 16 7 0.7294 -5.7547 -5.8040 17 6 -0.4639 -6.4229 -5.7373 18 1 -1.3882 -5.8707 -5.6519 19 6 -0.4862 -7.8101 -5.7851 20 7 0.6401 -8.4831 -5.8892 21 14 -2.1146 -8.7215 -5.7018 22 1 -2.6454 -8.9133 -7.0754 23 1 -1.9087 -10.0454 -5.0613 24 1 -3.0843 -7.9303 -4.9024 25 6 2.0555 -6.3785 -5.9217 26 6 3.0976 -5.2404 -5.9361 27 1 3.3740 -4.9834 -6.9586 28 8 4.2532 -5.6035 -5.1780 29 6 2.2145 -2.0389 -0.7616 30 8 2.0394 -0.7408 -1.1220 31 1 -0.3633 0.4629 0.9175 32 1 -0.3633 0.5631 -0.8596 33 1 -0.3633 -1.0260 -0.0578 34 1 1.3539 -0.8109 2.0246 35 1 3.0301 -0.3816 1.5464 36 1 2.4991 -3.4985 2.2747 37 1 2.7369 -5.5082 0.8697 38 1 2.6297 -5.3176 -1.5775 39 1 2.5344 -5.0461 -3.3819 40 1 0.7838 -3.8763 -6.7782 41 1 0.1754 -3.8388 -5.0949 42 1 0.6246 -9.4524 -5.9222 43 1 2.2338 -7.0338 -5.0692 44 1 2.1161 -6.9483 -6.8490 45 1 4.7183 -6.3804 -5.5176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083651280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:49 Heat of formation + Delta-G solvation = -78.981722 kcal Electronic energy + Delta-G solvation = -29159.396679 eV Core-core repulsion = 25142.255430 eV Total energy + Delta-G solvation = -4017.141249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -42.36899 -40.94535 -39.34323 -38.28361 -36.63837 -35.29753 -34.17557 -33.54043 -31.90480 -31.33289 -30.11747 -28.81661 -27.72070 -26.43427 -24.89065 -23.08168 -22.66903 -22.29819 -21.76736 -21.14227 -19.17611 -18.54625 -18.30348 -17.94000 -17.53959 -17.22954 -16.89752 -16.41988 -16.10950 -15.93445 -15.66071 -15.49025 -14.94419 -14.64850 -14.52529 -14.41229 -14.15688 -14.00404 -13.73575 -13.57015 -13.25024 -13.14360 -13.08270 -13.02319 -12.78805 -12.76333 -12.54924 -12.39004 -12.04899 -11.94164 -11.92241 -11.81067 -11.72194 -10.94474 -10.84037 -10.77649 -10.16521 -9.87062 -9.17777 -8.91591 -7.87685 -5.22987 -0.17285 0.29674 1.46056 1.46787 1.55582 1.84715 2.15480 2.26869 2.46794 2.78802 3.13321 3.33140 3.41096 3.52899 3.57518 3.73581 3.84722 3.92564 3.94576 3.97608 4.17423 4.22944 4.28397 4.33728 4.42622 4.55532 4.60136 4.66341 4.72077 4.80475 4.82815 4.86817 4.91356 5.02124 5.16625 5.19253 5.31310 5.38872 5.39383 5.46648 5.51993 5.66170 5.68063 6.14249 6.17154 6.56288 6.86445 7.07304 7.22289 7.70655 8.34756 9.21935 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003437 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.008158 B = 8144.444464 C = 8609.327862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.057 3.943 3 H 0.138 0.862 4 C -0.092 4.092 5 C -0.189 4.189 6 C -0.037 4.037 7 C -0.151 4.151 8 C -0.059 4.059 9 C -0.187 4.187 10 C 0.551 3.449 11 O -0.578 6.578 12 N -0.686 5.686 13 C 0.146 3.854 14 H 0.098 0.902 15 C 0.124 3.876 16 N -0.616 5.616 17 C -0.245 4.245 18 H 0.074 0.926 19 C -0.054 4.054 20 N -0.944 5.944 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.163 3.837 26 C 0.087 3.913 27 H 0.091 0.909 28 O -0.562 6.562 29 C 0.141 3.859 30 O -0.310 6.310 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.135 0.865 39 H 0.407 0.593 40 H 0.043 0.957 41 H 0.031 0.969 42 H 0.249 0.751 43 H 0.031 0.969 44 H 0.020 0.980 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 11.462 17.084 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 H 0.156 0.844 4 C -0.129 4.129 5 C -0.190 4.190 6 C -0.055 4.055 7 C -0.169 4.169 8 C -0.078 4.078 9 C -0.190 4.190 10 C 0.340 3.660 11 O -0.459 6.459 12 N -0.336 5.336 13 C 0.040 3.960 14 H 0.116 0.884 15 C -0.003 4.003 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.092 0.908 19 C -0.248 4.248 20 N -0.592 5.592 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.201 1.201 25 C 0.037 3.963 26 C 0.026 3.974 27 H 0.108 0.892 28 O -0.369 6.369 29 C 0.093 3.907 30 O -0.223 6.223 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.187 0.813 37 H 0.182 0.818 38 H 0.153 0.847 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.251 12.654 16.830 21.964 hybrid contribution -0.824 -1.659 -0.868 2.045 sum 5.427 10.995 15.962 20.128 Atomic orbital electron populations 1.22242 0.93865 1.02130 1.04203 1.23912 0.95370 0.97465 0.83059 0.84434 1.21947 1.04239 0.88586 0.98113 1.21212 1.07937 0.97903 0.91983 1.20932 0.93287 0.89271 1.01972 1.21364 1.02919 1.00595 0.92012 1.21289 0.95087 0.94481 0.96894 1.19357 1.15066 0.93084 0.91528 1.18568 0.75987 0.83774 0.87641 1.90731 1.51671 1.28093 1.75422 1.45406 1.72066 1.10033 1.06082 1.22083 0.95061 0.98592 0.80302 0.88413 1.22117 0.94677 0.85479 0.97992 1.44515 1.02754 1.00353 1.86754 1.19353 0.85046 0.89664 1.43356 0.90799 1.25508 1.00373 0.96762 1.02146 1.70104 1.25566 1.06020 1.57538 0.85132 0.79203 0.77756 0.77517 1.21338 1.21581 1.20050 1.21654 0.83314 0.92127 0.99159 1.23249 0.85655 0.93866 0.94588 0.89159 1.86386 1.40897 1.52481 1.57163 1.19765 0.92980 0.84521 0.93400 1.87009 1.78917 1.16538 1.39878 0.87311 0.92419 0.94050 0.86025 0.87156 0.81312 0.81767 0.84747 0.75680 0.93916 0.95044 0.94154 0.95071 0.96142 0.75380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.51 71.98 0.68 -2.37 16 2 C 0.06 1.11 4.32 31.18 0.13 1.25 16 3 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.09 -1.32 6.65 30.75 0.20 -1.12 16 5 C -0.19 -4.12 6.26 -19.54 -0.12 -4.24 16 6 C -0.04 -0.64 10.02 22.23 0.22 -0.42 16 7 C -0.15 -3.02 10.05 22.26 0.22 -2.80 16 8 C -0.06 -1.62 9.51 22.47 0.21 -1.40 16 9 C -0.19 -6.38 5.89 -19.93 -0.12 -6.50 16 10 C 0.55 22.45 7.76 86.70 0.67 23.12 16 11 O -0.58 -27.11 15.51 10.89 0.17 -26.94 16 12 N -0.69 -26.73 4.76 -438.76 -2.09 -28.82 16 13 C 0.15 5.78 3.31 46.46 0.15 5.93 16 14 H 0.10 3.82 7.54 -2.39 -0.02 3.80 16 15 C 0.12 5.55 6.95 86.93 0.60 6.15 16 16 N -0.62 -31.59 3.39 -691.51 -2.35 -33.93 16 17 C -0.25 -13.81 10.28 84.04 0.86 -12.95 16 18 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.05 -3.02 5.49 84.86 0.47 -2.55 16 20 N -0.94 -54.21 10.31 21.65 0.22 -53.99 16 21 Si 0.98 45.29 29.55 68.60 2.03 47.31 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 C 0.16 7.60 5.13 86.73 0.45 8.04 16 26 C 0.09 3.17 4.12 31.78 0.13 3.31 16 27 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 28 O -0.56 -17.97 12.67 -148.98 -1.89 -19.86 16 29 C 0.14 4.41 6.61 23.01 0.15 4.56 16 30 O -0.31 -10.03 9.84 -77.05 -0.76 -10.79 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.12 1.05 7.92 -2.39 -0.02 1.03 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.13 3.62 6.37 -2.91 -0.02 3.60 16 39 H 0.41 15.31 6.40 -92.71 -0.59 14.72 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 43 H 0.03 1.60 7.30 -2.39 -0.02 1.59 16 44 H 0.02 1.06 7.50 -2.38 -0.02 1.04 16 45 H 0.40 9.45 9.11 -74.06 -0.67 8.77 16 Total: -1.00 -77.76 368.69 0.04 -77.72 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.23 Total: 31.28 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.93 Total: 18.01 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -4.21 Total: -116.75 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -2.48 Total: -57.59 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -77.76 0.04 -77.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083651280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.260 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds