Wall clock time and date at job start Tue Mar 31 2020 17:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.84027 * 2 1 4 4 C 1.54698 * 110.94769 * 123.73034 * 2 1 3 5 5 O 1.43749 * 102.82149 * 143.52715 * 4 2 1 6 6 C 1.35993 * 109.31625 * 332.22348 * 5 4 2 7 7 C 1.39586 * 129.72164 * 198.51697 * 6 5 4 8 8 C 1.37477 * 120.42932 * 180.59509 * 7 6 5 9 9 C 1.39748 * 120.20174 * 0.11642 * 8 7 6 10 10 C 1.47607 * 120.26657 * 179.80393 * 9 8 7 11 11 O 1.21583 * 120.00146 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99527 * 0.26967 * 10 9 8 13 13 C 1.46505 * 119.99724 * 179.72722 * 12 10 9 14 14 H 1.09000 * 110.64095 * 34.30095 * 13 12 10 15 15 C 1.54324 * 110.71897 * 271.15974 * 13 12 10 16 16 N 1.47025 * 107.27206 * 219.44371 * 15 13 12 17 17 C 1.36932 * 125.65104 * 178.97294 * 16 15 13 18 18 H 1.08003 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00308 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47048 * 90.00240 * 21 19 17 23 23 H 1.48498 * 109.47222 * 210.00053 * 21 19 17 24 24 H 1.48497 * 109.47269 * 330.00197 * 21 19 17 25 25 C 1.47423 * 108.69949 * 358.94442 * 16 15 13 26 26 C 1.55122 * 104.94650 * 24.00072 * 25 16 15 27 27 H 1.09005 * 111.15999 * 205.13449 * 26 25 16 28 28 O 1.42897 * 110.93327 * 81.21882 * 26 25 16 29 29 C 1.39807 * 119.46761 * 0.07421 * 9 8 7 30 30 C 1.37309 * 119.86110 * 359.45046 * 29 9 8 31 31 H 1.08999 * 109.47539 * 297.72314 * 1 2 3 32 32 H 1.09001 * 109.47557 * 57.72991 * 1 2 3 33 33 H 1.09003 * 109.47112 * 177.72402 * 1 2 3 34 34 H 1.09002 * 110.74743 * 25.19111 * 4 2 1 35 35 H 1.09004 * 110.74173 * 261.85728 * 4 2 1 36 36 H 1.07997 * 119.78568 * 0.57827 * 7 6 5 37 37 H 1.08003 * 119.89485 * 180.09628 * 8 7 6 38 38 H 0.97000 * 120.00483 * 359.73154 * 12 10 9 39 39 H 1.09007 * 109.88374 * 338.86161 * 15 13 12 40 40 H 1.08999 * 109.88498 * 100.02451 * 15 13 12 41 41 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 42 42 H 1.08996 * 110.36608 * 142.97057 * 25 16 15 43 43 H 1.09006 * 110.36555 * 265.17843 * 25 16 15 44 44 H 0.96698 * 114.00541 * 67.95772 * 28 26 25 45 45 H 1.08000 * 120.06756 * 179.67960 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0830 -0.8022 1.2015 5 8 3.2497 -1.4368 0.6515 6 6 3.0761 -1.6162 -0.6853 7 6 3.7448 -2.4689 -1.5652 8 6 3.4182 -2.4870 -2.9005 9 6 2.4133 -1.6482 -3.3898 10 6 2.0645 -1.6634 -4.8240 11 8 1.1891 -0.9319 -5.2445 12 7 2.7123 -2.4924 -5.6663 13 6 2.3620 -2.5118 -7.0887 14 1 2.0770 -1.5159 -7.4279 15 6 1.2297 -3.5252 -7.3584 16 7 1.5389 -4.1973 -8.6289 17 6 0.7895 -5.1831 -9.2134 18 1 -0.1156 -5.5283 -8.7358 19 6 1.1923 -5.7380 -10.4203 20 7 2.2950 -5.3169 -11.0027 21 14 0.1695 -7.0822 -11.2179 22 1 -0.8371 -6.4684 -12.1209 23 1 1.0559 -7.9793 -12.0019 24 1 -0.5234 -7.8675 -10.1652 25 6 2.7892 -3.6337 -9.1698 26 6 3.5381 -3.0647 -7.9362 27 1 4.2213 -2.2658 -8.2246 28 8 4.2308 -4.1007 -7.2369 29 6 1.7450 -0.7904 -2.5111 30 6 2.0722 -0.7872 -1.1776 31 1 -0.3634 0.4781 0.9097 32 1 -0.3634 0.5487 -0.8689 33 1 -0.3633 -1.0269 -0.0408 34 1 1.3596 -1.5464 1.5348 35 1 2.3559 -0.1345 2.0188 36 1 4.5240 -3.1185 -1.1946 37 1 3.9401 -3.1514 -3.5733 38 1 3.4105 -3.0763 -5.3308 39 1 1.1879 -4.2576 -6.5521 40 1 0.2761 -3.0032 -7.4376 41 1 2.5763 -5.7044 -11.8462 42 1 3.3815 -4.4139 -9.6478 43 1 2.5698 -2.8363 -9.8799 44 1 4.9743 -4.4772 -7.7273 45 1 0.9704 -0.1343 -2.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083715319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:59 Heat of formation + Delta-G solvation = -55.394968 kcal Electronic energy + Delta-G solvation = -28228.620969 eV Core-core repulsion = 24212.502518 eV Total energy + Delta-G solvation = -4016.118451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55571 -39.79737 -38.05892 -36.99461 -34.73427 -34.54587 -33.95700 -31.77970 -30.60885 -30.13148 -28.43618 -27.04994 -26.91402 -24.73304 -23.62668 -23.15716 -21.18076 -20.69293 -20.36235 -19.72480 -17.90240 -17.74439 -17.09722 -16.86466 -16.42831 -16.23208 -15.39750 -14.91666 -14.70243 -14.68365 -14.49260 -14.07345 -14.03949 -13.73278 -13.65267 -13.10715 -13.02096 -12.89144 -12.81998 -12.53783 -12.47630 -12.01248 -11.77389 -11.54707 -11.33425 -11.13813 -11.05122 -10.92911 -10.85053 -10.61595 -10.35709 -10.05241 -9.83390 -9.76458 -9.23572 -9.20789 -8.75718 -8.67793 -8.38599 -6.84379 -5.69049 -3.08671 0.69263 1.07775 2.75611 2.96610 3.31887 3.40169 3.45176 3.47226 3.72754 3.95591 4.18732 4.45659 4.48263 4.57523 4.62124 4.77180 4.90417 4.95577 4.98796 5.05093 5.17239 5.32153 5.34559 5.35831 5.38640 5.49380 5.56096 5.71982 5.74131 5.79664 5.90124 5.94608 6.05526 6.07580 6.15393 6.21903 6.28650 6.54986 6.71876 6.82196 6.96206 7.26398 7.56864 7.72058 7.82179 8.11707 8.31765 8.45063 9.18783 9.79687 10.43115 11.36194 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.002390 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.436589 B =11714.759016 C =12033.215264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.098 0.902 4 C 0.054 3.946 5 O -0.302 6.302 6 C 0.127 3.873 7 C -0.145 4.145 8 C -0.047 4.047 9 C -0.157 4.157 10 C 0.558 3.442 11 O -0.544 6.544 12 N -0.702 5.702 13 C 0.143 3.857 14 H 0.102 0.898 15 C 0.131 3.869 16 N -0.597 5.597 17 C -0.215 4.215 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.928 5.928 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.067 3.933 27 H 0.060 0.940 28 O -0.562 6.562 29 C -0.008 4.008 30 C -0.182 4.182 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.252 0.748 42 H 0.116 0.884 43 H 0.022 0.978 44 H 0.380 0.620 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 9.752 22.281 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.116 0.884 4 C -0.021 4.021 5 O -0.216 6.216 6 C 0.081 3.919 7 C -0.164 4.164 8 C -0.066 4.066 9 C -0.161 4.161 10 C 0.345 3.655 11 O -0.423 6.423 12 N -0.354 5.354 13 C 0.038 3.962 14 H 0.119 0.881 15 C 0.004 3.996 16 N -0.323 5.323 17 C -0.343 4.343 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.747 3.253 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.002 3.998 26 C 0.006 3.994 27 H 0.078 0.922 28 O -0.368 6.368 29 C -0.027 4.027 30 C -0.183 4.183 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.244 0.756 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.133 0.867 43 H 0.040 0.960 44 H 0.227 0.773 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.596 10.197 22.383 24.858 hybrid contribution 0.074 -0.964 -0.757 1.228 sum 3.670 9.233 21.626 23.799 Atomic orbital electron populations 1.21743 0.92659 1.02889 1.02694 1.21392 0.97574 0.99642 0.91141 0.88396 1.24005 0.85970 0.95801 0.96342 1.86791 1.39377 1.76947 1.18477 1.19832 0.94511 0.93588 0.83926 1.20166 1.03608 1.00632 0.91975 1.21113 0.94702 0.96285 0.94505 1.19845 1.00672 1.01678 0.93858 1.18095 0.81698 0.80288 0.85442 1.90770 1.31530 1.41976 1.78021 1.45750 1.39664 1.41278 1.08673 1.22172 0.95273 0.99964 0.78835 0.88051 1.21600 0.94888 0.93025 0.90065 1.44284 1.25360 1.42134 1.20506 1.19102 1.03350 1.09866 1.02024 0.90408 1.24759 0.98148 1.00364 0.97540 1.69720 1.23894 1.45290 1.18792 0.86028 0.78961 0.81166 0.79104 1.21633 1.21666 1.20701 1.22633 0.88473 0.98173 0.90558 1.23634 0.92342 0.89098 0.94295 0.92249 1.86223 1.49032 1.55020 1.46517 1.20321 0.96810 0.95475 0.90047 1.20650 1.01571 1.01001 0.95097 0.91814 0.91438 0.91936 0.90167 0.87472 0.84725 0.84316 0.75645 0.95222 0.95351 0.93737 0.86697 0.95982 0.77276 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.16 37.15 0.34 -0.58 16 2 C -0.08 -0.60 3.73 -90.40 -0.34 -0.94 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.05 0.36 7.55 38.05 0.29 0.65 16 5 O -0.30 -3.08 11.09 -19.72 -0.22 -3.30 16 6 C 0.13 1.40 7.05 -38.73 -0.27 1.12 16 7 C -0.15 -1.51 10.05 -39.36 -0.40 -1.91 16 8 C -0.05 -0.52 9.52 -39.30 -0.37 -0.90 16 9 C -0.16 -2.09 5.88 -104.92 -0.62 -2.71 16 10 C 0.56 9.11 7.77 -12.44 -0.10 9.02 16 11 O -0.54 -10.64 16.04 5.29 0.08 -10.56 16 12 N -0.70 -11.23 5.03 -53.04 -0.27 -11.50 16 13 C 0.14 2.68 3.15 -66.09 -0.21 2.47 16 14 H 0.10 1.94 7.62 -51.93 -0.40 1.55 16 15 C 0.13 2.95 7.00 -3.06 -0.02 2.93 16 16 N -0.60 -15.44 3.40 -169.93 -0.58 -16.02 16 17 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 18 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 20 N -0.93 -26.52 10.09 55.49 0.56 -25.96 16 21 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.98 5.62 -2.41 -0.01 2.96 16 26 C 0.07 1.21 4.31 -24.47 -0.11 1.10 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 O -0.56 -9.36 12.23 -35.23 -0.43 -9.79 16 29 C -0.01 -0.09 9.47 -39.33 -0.37 -0.47 16 30 C -0.18 -1.94 5.68 -104.13 -0.59 -2.53 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.31 6.40 -52.48 -0.34 0.98 16 38 H 0.41 5.77 5.61 -40.82 -0.23 5.54 16 39 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.12 2.96 5.87 -51.93 -0.31 2.65 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.38 5.05 9.12 45.56 0.42 5.46 16 45 H 0.14 1.70 7.66 -52.49 -0.40 1.30 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -33.61 368.00 -8.79 -42.40 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.43 Total: 8.50 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -3.03 Total: 3.53 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.28 Total: -53.47 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.56 Total: -23.64 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.61 -8.79 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083715319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.995 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds