Wall clock time and date at job start Tue Mar 31 2020 17:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.84027 * 2 1 4 4 C 1.54698 * 110.94769 * 123.73034 * 2 1 3 5 5 O 1.43749 * 102.82149 * 143.52715 * 4 2 1 6 6 C 1.35993 * 109.31625 * 332.22348 * 5 4 2 7 7 C 1.39586 * 129.72164 * 198.51697 * 6 5 4 8 8 C 1.37477 * 120.42932 * 180.59509 * 7 6 5 9 9 C 1.39748 * 120.20174 * 0.11642 * 8 7 6 10 10 C 1.47607 * 120.26657 * 179.80393 * 9 8 7 11 11 O 1.21583 * 120.00146 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99527 * 0.26967 * 10 9 8 13 13 C 1.46505 * 119.99724 * 179.72722 * 12 10 9 14 14 H 1.09000 * 110.64095 * 34.30095 * 13 12 10 15 15 C 1.54324 * 110.71897 * 271.15974 * 13 12 10 16 16 N 1.47025 * 107.27206 * 219.44371 * 15 13 12 17 17 C 1.36932 * 125.65104 * 178.97294 * 16 15 13 18 18 H 1.08003 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00308 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47048 * 90.00240 * 21 19 17 23 23 H 1.48498 * 109.47222 * 210.00053 * 21 19 17 24 24 H 1.48497 * 109.47269 * 330.00197 * 21 19 17 25 25 C 1.47423 * 108.69949 * 358.94442 * 16 15 13 26 26 C 1.55122 * 104.94650 * 24.00072 * 25 16 15 27 27 H 1.09005 * 111.15999 * 205.13449 * 26 25 16 28 28 O 1.42897 * 110.93327 * 81.21882 * 26 25 16 29 29 C 1.39807 * 119.46761 * 0.07421 * 9 8 7 30 30 C 1.37309 * 119.86110 * 359.45046 * 29 9 8 31 31 H 1.08999 * 109.47539 * 297.72314 * 1 2 3 32 32 H 1.09001 * 109.47557 * 57.72991 * 1 2 3 33 33 H 1.09003 * 109.47112 * 177.72402 * 1 2 3 34 34 H 1.09002 * 110.74743 * 25.19111 * 4 2 1 35 35 H 1.09004 * 110.74173 * 261.85728 * 4 2 1 36 36 H 1.07997 * 119.78568 * 0.57827 * 7 6 5 37 37 H 1.08003 * 119.89485 * 180.09628 * 8 7 6 38 38 H 0.97000 * 120.00483 * 359.73154 * 12 10 9 39 39 H 1.09007 * 109.88374 * 338.86161 * 15 13 12 40 40 H 1.08999 * 109.88498 * 100.02451 * 15 13 12 41 41 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 42 42 H 1.08996 * 110.36608 * 142.97057 * 25 16 15 43 43 H 1.09006 * 110.36555 * 265.17843 * 25 16 15 44 44 H 0.96698 * 114.00541 * 67.95772 * 28 26 25 45 45 H 1.08000 * 120.06756 * 179.67960 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0830 -0.8022 1.2015 5 8 3.2497 -1.4368 0.6515 6 6 3.0761 -1.6162 -0.6853 7 6 3.7448 -2.4689 -1.5652 8 6 3.4182 -2.4870 -2.9005 9 6 2.4133 -1.6482 -3.3898 10 6 2.0645 -1.6634 -4.8240 11 8 1.1891 -0.9319 -5.2445 12 7 2.7123 -2.4924 -5.6663 13 6 2.3620 -2.5118 -7.0887 14 1 2.0770 -1.5159 -7.4279 15 6 1.2297 -3.5252 -7.3584 16 7 1.5389 -4.1973 -8.6289 17 6 0.7895 -5.1831 -9.2134 18 1 -0.1156 -5.5283 -8.7358 19 6 1.1923 -5.7380 -10.4203 20 7 2.2950 -5.3169 -11.0027 21 14 0.1695 -7.0822 -11.2179 22 1 -0.8371 -6.4684 -12.1209 23 1 1.0559 -7.9793 -12.0019 24 1 -0.5234 -7.8675 -10.1652 25 6 2.7892 -3.6337 -9.1698 26 6 3.5381 -3.0647 -7.9362 27 1 4.2213 -2.2658 -8.2246 28 8 4.2308 -4.1007 -7.2369 29 6 1.7450 -0.7904 -2.5111 30 6 2.0722 -0.7872 -1.1776 31 1 -0.3634 0.4781 0.9097 32 1 -0.3634 0.5487 -0.8689 33 1 -0.3633 -1.0269 -0.0408 34 1 1.3596 -1.5464 1.5348 35 1 2.3559 -0.1345 2.0188 36 1 4.5240 -3.1185 -1.1946 37 1 3.9401 -3.1514 -3.5733 38 1 3.4105 -3.0763 -5.3308 39 1 1.1879 -4.2576 -6.5521 40 1 0.2761 -3.0032 -7.4376 41 1 2.5763 -5.7044 -11.8462 42 1 3.3815 -4.4139 -9.6478 43 1 2.5698 -2.8363 -9.8799 44 1 4.9743 -4.4772 -7.7273 45 1 0.9704 -0.1343 -2.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083715319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:58 Heat of formation + Delta-G solvation = -79.845512 kcal Electronic energy + Delta-G solvation = -28229.681224 eV Core-core repulsion = 24212.502518 eV Total energy + Delta-G solvation = -4017.178706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32731 -41.10557 -39.52202 -38.01750 -36.37351 -35.58539 -35.09067 -33.64025 -31.59727 -31.07940 -30.10979 -28.67073 -27.54257 -26.53313 -24.78532 -23.97094 -22.43484 -21.94746 -21.70720 -21.14901 -19.32364 -18.65508 -18.50159 -18.26156 -17.40086 -17.06662 -16.84427 -16.64500 -16.11875 -15.88577 -15.72963 -15.38027 -14.92445 -14.77599 -14.70347 -14.47159 -14.32265 -14.28600 -13.82962 -13.66388 -13.46791 -13.22006 -13.11224 -12.94584 -12.75073 -12.69895 -12.25370 -12.14208 -12.11472 -11.90381 -11.86171 -11.79669 -11.66625 -11.12881 -10.87779 -10.71715 -10.17753 -10.04017 -9.26215 -8.90869 -7.81168 -5.24488 -0.25240 0.23764 1.46265 1.47848 1.56582 1.71213 2.01539 2.23088 2.48661 2.72801 3.19462 3.29796 3.31467 3.52333 3.60675 3.73624 3.80443 3.84723 3.94768 4.02710 4.10033 4.14585 4.30539 4.41127 4.47593 4.48110 4.55128 4.67105 4.72339 4.79641 4.85037 4.93131 5.01358 5.02786 5.07288 5.23307 5.24482 5.30218 5.33650 5.38142 5.44982 5.47947 5.71556 6.04988 6.25466 6.54440 6.91422 7.08431 7.18183 7.72517 8.35440 9.20941 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.002390 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.436589 B =11714.759016 C =12033.215264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 H 0.109 0.891 4 C 0.051 3.949 5 O -0.312 6.312 6 C 0.125 3.875 7 C -0.146 4.146 8 C -0.041 4.041 9 C -0.178 4.178 10 C 0.558 3.442 11 O -0.583 6.583 12 N -0.692 5.692 13 C 0.153 3.847 14 H 0.097 0.903 15 C 0.132 3.868 16 N -0.616 5.616 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.981 3.019 22 H -0.288 1.288 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.127 3.873 26 C 0.091 3.909 27 H 0.096 0.904 28 O -0.563 6.563 29 C -0.018 4.018 30 C -0.187 4.187 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.417 0.583 39 H 0.023 0.977 40 H 0.010 0.990 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.000 1.000 44 H 0.397 0.603 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 9.678 24.582 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.127 0.873 4 C -0.023 4.023 5 O -0.226 6.226 6 C 0.079 3.921 7 C -0.165 4.165 8 C -0.060 4.060 9 C -0.181 4.181 10 C 0.348 3.652 11 O -0.465 6.465 12 N -0.344 5.344 13 C 0.047 3.953 14 H 0.115 0.885 15 C 0.005 3.995 16 N -0.342 5.342 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.809 3.191 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.001 3.999 26 C 0.031 3.969 27 H 0.114 0.886 28 O -0.371 6.371 29 C -0.037 4.037 30 C -0.188 4.188 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.256 0.744 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.018 0.982 44 H 0.247 0.753 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.721 10.115 24.720 27.123 hybrid contribution -0.283 -0.924 -1.371 1.677 sum 4.438 9.191 23.349 25.482 Atomic orbital electron populations 1.21731 0.91968 1.02513 1.03532 1.21511 0.98155 0.99926 0.90060 0.87306 1.24311 0.85237 0.96318 0.96468 1.86784 1.40851 1.77095 1.17854 1.20085 0.94167 0.93304 0.84573 1.20432 1.03856 1.00669 0.91524 1.21242 0.93823 0.95699 0.95194 1.19655 1.02672 1.03801 0.92010 1.18563 0.80760 0.79295 0.86617 1.90744 1.33280 1.43572 1.78923 1.45575 1.39867 1.41531 1.07427 1.21851 0.94230 0.98499 0.80712 0.88474 1.21636 0.95808 0.93367 0.88689 1.44546 1.26167 1.42020 1.21471 1.19383 1.03888 1.10937 1.02809 0.90944 1.25555 0.99381 1.02429 0.97949 1.69940 1.24814 1.45977 1.18737 0.85044 0.77471 0.78502 0.78072 1.21479 1.21334 1.19878 1.22546 0.87922 0.96832 0.92588 1.23317 0.92293 0.89885 0.91443 0.88603 1.86189 1.49669 1.54837 1.46392 1.20312 0.96883 0.95561 0.90902 1.20929 1.01507 1.01288 0.95064 0.89427 0.92325 0.92766 0.89134 0.84518 0.82427 0.82698 0.74351 0.95945 0.97182 0.94021 0.88991 0.98163 0.75258 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.16 71.98 0.66 -0.93 16 2 C -0.08 -1.02 3.73 -10.65 -0.04 -1.06 16 3 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.05 0.54 7.55 72.56 0.55 1.08 16 5 O -0.31 -5.54 11.09 -93.47 -1.04 -6.58 16 6 C 0.13 2.50 7.05 22.82 0.16 2.66 16 7 C -0.15 -2.72 10.05 22.42 0.23 -2.49 16 8 C -0.04 -0.84 9.52 22.46 0.21 -0.63 16 9 C -0.18 -4.68 5.88 -20.06 -0.12 -4.80 16 10 C 0.56 18.36 7.77 86.72 0.67 19.04 16 11 O -0.58 -23.53 16.04 -3.98 -0.06 -23.60 16 12 N -0.69 -21.71 5.03 -440.00 -2.21 -23.93 16 13 C 0.15 5.74 3.15 46.18 0.15 5.89 16 14 H 0.10 3.76 7.62 -2.39 -0.02 3.74 16 15 C 0.13 6.10 7.00 86.73 0.61 6.70 16 16 N -0.62 -32.68 3.40 -691.55 -2.35 -35.03 16 17 C -0.24 -13.94 10.27 84.03 0.86 -13.07 16 18 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 20 N -0.95 -54.82 10.09 21.65 0.22 -54.60 16 21 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.13 6.01 5.62 86.93 0.49 6.50 16 26 C 0.09 3.20 4.31 32.06 0.14 3.34 16 27 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 28 O -0.56 -17.63 12.23 -148.98 -1.82 -19.45 16 29 C -0.02 -0.43 9.47 22.43 0.21 -0.22 16 30 C -0.19 -3.76 5.68 -19.54 -0.11 -3.87 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.79 7.92 -2.39 -0.02 0.77 16 35 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.16 2.57 6.40 -2.91 -0.02 2.55 16 38 H 0.42 11.18 5.61 -92.71 -0.52 10.66 16 39 H 0.02 1.06 8.03 -2.38 -0.02 1.04 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.09 4.81 5.87 -2.39 -0.01 4.80 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.01 16 44 H 0.40 9.64 9.12 -74.06 -0.68 8.97 16 45 H 0.13 3.31 7.66 -2.91 -0.02 3.29 16 Total: -1.00 -74.31 368.00 -0.26 -74.57 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.16 Total: 25.51 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.13 Total: 15.16 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -4.34 Total: -113.56 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -2.92 Total: -49.63 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.31 -0.26 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083715319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.273 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds