Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.65946 * 2 1 4 4 C 1.54701 * 110.74508 * 123.20120 * 2 1 3 5 5 C 1.51684 * 101.90158 * 93.16783 * 4 2 1 6 6 C 1.37309 * 132.06390 * 195.86893 * 5 4 2 7 7 C 1.39809 * 119.85776 * 179.70429 * 6 5 4 8 8 C 1.47603 * 120.26547 * 179.77063 * 7 6 5 9 9 O 1.21589 * 119.99929 * 359.70874 * 8 7 6 10 10 N 1.34773 * 120.00153 * 179.72226 * 8 7 6 11 11 C 1.46501 * 120.00176 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88331 * 31.11616 * 11 10 8 13 13 C 1.55127 * 111.22198 * 267.20309 * 11 10 8 14 14 N 1.47429 * 104.72314 * 279.17597 * 13 11 10 15 15 C 1.36929 * 125.64895 * 155.82191 * 14 13 11 16 16 H 1.08004 * 120.00523 * 4.89490 * 15 14 13 17 17 C 1.38816 * 119.99814 * 184.90034 * 15 14 13 18 18 N 1.31619 * 120.00448 * 352.94234 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 172.94295 * 17 15 14 20 20 H 1.48497 * 109.47426 * 275.01012 * 19 17 15 21 21 H 1.48502 * 109.47087 * 35.00888 * 19 17 15 22 22 H 1.48506 * 109.47330 * 155.00688 * 19 17 15 23 23 C 1.47029 * 108.69958 * 335.55383 * 14 13 11 24 24 C 1.54324 * 107.27042 * 1.29015 * 23 14 13 25 25 H 1.09001 * 110.71187 * 263.64648 * 24 23 14 26 26 O 1.42899 * 110.71728 * 140.55705 * 24 23 14 27 27 C 1.39758 * 119.46577 * 359.48367 * 7 6 5 28 28 C 1.37467 * 120.20287 * 0.39546 * 27 7 6 29 29 C 1.39189 * 106.99826 * 15.38822 * 5 4 2 30 30 O 1.35997 * 111.16837 * 1.11690 * 29 5 4 31 31 H 1.08996 * 109.46824 * 296.79227 * 1 2 3 32 32 H 1.08996 * 109.46840 * 56.80041 * 1 2 3 33 33 H 1.09004 * 109.46836 * 176.79620 * 1 2 3 34 34 H 1.09006 * 110.94487 * 335.02275 * 4 2 1 35 35 H 1.08994 * 110.97604 * 211.33202 * 4 2 1 36 36 H 1.07998 * 120.07090 * 359.46040 * 6 5 4 37 37 H 0.97002 * 119.99746 * 359.97438 * 10 8 7 38 38 H 1.08998 * 110.49868 * 160.33431 * 13 11 10 39 39 H 1.09001 * 110.34461 * 37.93975 * 13 11 10 40 40 H 0.96993 * 120.00358 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.87727 * 120.70539 * 23 14 13 42 42 H 1.09001 * 109.87996 * 241.86611 * 23 14 13 43 43 H 0.96705 * 114.00287 * 61.45141 * 26 24 23 44 44 H 1.07998 * 119.89199 * 180.41194 * 27 7 6 45 45 H 1.07999 * 119.78045 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0780 -0.7922 1.2105 5 6 2.2655 -2.1765 0.6195 6 6 2.4484 -3.4075 1.1998 7 6 2.5911 -4.5419 0.3952 8 6 2.7931 -5.8688 1.0094 9 8 2.8413 -5.9777 2.2194 10 7 2.9244 -6.9597 0.2289 11 6 3.1255 -8.2766 0.8384 12 1 2.6289 -8.3365 1.8068 13 6 4.6348 -8.6105 0.9687 14 7 5.0306 -9.0848 -0.3700 15 6 6.2991 -9.0547 -0.8845 16 1 7.1247 -8.7320 -0.2675 17 6 6.5241 -9.4389 -2.1993 18 7 5.5467 -9.9626 -2.9084 19 14 8.2141 -9.2128 -2.9623 20 1 8.3362 -7.8318 -3.4945 21 1 9.2575 -9.4396 -1.9303 22 1 8.3922 -10.1872 -4.0687 23 6 3.8385 -9.6013 -1.0585 24 6 2.6394 -9.4069 -0.1067 25 1 2.4387 -10.3210 0.4521 26 8 1.4794 -8.9952 -0.8326 27 6 2.5348 -4.4103 -0.9950 28 6 2.3488 -3.1736 -1.5656 29 6 2.2145 -2.0384 -0.7646 30 8 2.0429 -0.7376 -1.1223 31 1 -0.3633 0.4632 0.9173 32 1 -0.3633 0.5627 -0.8599 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3531 -0.8110 2.0244 35 1 3.0292 -0.3806 1.5480 36 1 2.4859 -3.4986 2.2753 37 1 2.8858 -6.8728 -0.7365 38 1 4.7897 -9.3945 1.7100 39 1 5.1988 -7.7171 1.2367 40 1 5.7040 -10.2314 -3.8270 41 1 3.6734 -9.0451 -1.9813 42 1 3.9683 -10.6607 -1.2800 43 1 1.1807 -9.6355 -1.4929 44 1 2.6375 -5.2830 -1.6228 45 1 2.3060 -3.0798 -2.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083863740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = -58.404169 kcal Electronic energy + Delta-G solvation = -28619.402425 eV Core-core repulsion = 24603.153485 eV Total energy + Delta-G solvation = -4016.248939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.45020 -39.71913 -38.05765 -36.90816 -35.07069 -33.78022 -33.35683 -31.85218 -30.95392 -30.33400 -28.45844 -27.29512 -26.81588 -24.59162 -23.63539 -22.21343 -21.81695 -20.70710 -20.34544 -19.68983 -17.81104 -17.32397 -16.97937 -16.68711 -16.48221 -16.13542 -15.60304 -14.80217 -14.69698 -14.42851 -14.34637 -13.97876 -13.91258 -13.60601 -13.36779 -13.13296 -12.87199 -12.74354 -12.63469 -12.46751 -12.40287 -12.32878 -11.97349 -11.52250 -11.45540 -11.25936 -11.02506 -10.88099 -10.85457 -10.75986 -10.23619 -10.09920 -9.87308 -9.61461 -9.31126 -9.03969 -8.77861 -8.54150 -8.22610 -6.91477 -5.80372 -3.12522 0.85268 1.23368 2.88311 3.09001 3.37185 3.43021 3.43701 3.49545 3.88551 4.12243 4.31172 4.41886 4.53252 4.59417 4.69374 4.81789 4.94585 5.01293 5.16203 5.20889 5.25953 5.31002 5.38085 5.42826 5.50657 5.53562 5.56128 5.65027 5.75112 5.81212 5.89426 6.07090 6.13658 6.20973 6.24973 6.30331 6.39535 6.45875 6.60332 6.97232 7.02056 7.28337 7.42897 7.69865 7.96082 8.06631 8.15213 8.59296 9.12946 9.73181 10.37433 11.31806 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.003093 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.934021 B = 9051.795113 C = 9967.993387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.116 0.884 4 C -0.104 4.104 5 C -0.187 4.187 6 C -0.011 4.011 7 C -0.155 4.155 8 C 0.562 3.438 9 O -0.554 6.554 10 N -0.685 5.685 11 C 0.141 3.859 12 H 0.094 0.906 13 C 0.123 3.877 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.288 1.288 21 H -0.282 1.282 22 H -0.291 1.291 23 C 0.148 3.852 24 C 0.064 3.936 25 H 0.067 0.933 26 O -0.563 6.563 27 C -0.044 4.044 28 C -0.145 4.145 29 C 0.127 3.873 30 O -0.298 6.298 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.406 0.594 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.253 0.747 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.139 0.861 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 15.509 4.710 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.134 0.866 4 C -0.141 4.141 5 C -0.188 4.188 6 C -0.030 4.030 7 C -0.158 4.158 8 C 0.349 3.651 9 O -0.434 6.434 10 N -0.334 5.334 11 C 0.035 3.965 12 H 0.112 0.888 13 C -0.004 4.004 14 N -0.328 5.328 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.023 3.977 24 C 0.003 3.997 25 H 0.085 0.915 26 O -0.368 6.368 27 C -0.063 4.063 28 C -0.163 4.163 29 C 0.081 3.919 30 O -0.212 6.212 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.242 0.758 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.224 0.776 44 H 0.157 0.843 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.503 15.981 5.528 20.452 hybrid contribution 0.918 -0.482 -1.247 1.621 sum -10.586 15.499 4.281 19.251 Atomic orbital electron populations 1.22256 0.94090 1.03478 1.03075 1.23449 0.94798 0.96392 0.83387 0.86626 1.21851 1.02776 0.91115 0.98336 1.20626 1.09097 0.95312 0.93787 1.20305 0.93140 0.89055 1.00524 1.19824 1.08564 0.93888 0.93554 1.17994 0.76604 0.83930 0.86565 1.90730 1.52332 1.86460 1.13918 1.45417 1.71361 1.06077 1.10569 1.22216 0.97092 0.81044 0.96128 0.88772 1.22069 0.91548 0.97485 0.89336 1.44320 1.04789 1.71984 1.11688 1.19050 0.83424 1.38453 0.94575 0.90320 1.24792 0.97911 1.00958 0.96573 1.69924 1.30854 1.46695 1.09526 0.86147 0.83318 0.77510 0.78870 1.21482 1.20737 1.21728 1.21887 0.83309 0.99290 0.93218 1.23563 0.86808 0.95423 0.93860 0.91475 1.86406 1.45743 1.49149 1.55499 1.21138 0.94146 0.97068 0.93907 1.20177 1.07025 0.89053 1.00082 1.19812 0.94423 0.84877 0.92815 1.86854 1.79430 1.16658 1.38245 0.90581 0.91331 0.91662 0.88846 0.88993 0.84502 0.75761 0.94967 0.93103 0.93700 0.92307 0.93669 0.77554 0.84313 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.51 37.16 0.35 -0.82 16 2 C 0.08 0.61 4.30 -25.83 -0.11 0.50 16 3 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -0.88 6.65 -26.50 -0.18 -1.06 16 5 C -0.19 -2.26 6.25 -104.12 -0.65 -2.91 16 6 C -0.01 -0.16 9.58 -39.33 -0.38 -0.53 16 7 C -0.16 -2.37 5.88 -104.92 -0.62 -2.99 16 8 C 0.56 10.06 7.77 -12.44 -0.10 9.96 16 9 O -0.55 -11.23 16.00 5.29 0.08 -11.15 16 10 N -0.68 -12.23 4.77 -52.64 -0.25 -12.49 16 11 C 0.14 2.62 3.31 -65.67 -0.22 2.41 16 12 H 0.09 1.71 7.54 -51.93 -0.39 1.32 16 13 C 0.12 2.58 6.95 -2.41 -0.02 2.56 16 14 N -0.60 -14.69 3.39 -169.93 -0.58 -15.27 16 15 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 18 N -0.92 -25.87 10.36 55.49 0.57 -25.29 16 19 Si 0.91 21.75 29.56 -169.99 -5.02 16.72 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.15 3.32 5.14 -3.06 -0.02 3.30 16 24 C 0.06 1.13 4.12 -24.90 -0.10 1.03 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 O -0.56 -8.94 12.67 -35.23 -0.45 -9.38 16 27 C -0.04 -0.60 9.52 -39.29 -0.37 -0.97 16 28 C -0.14 -1.83 10.05 -39.36 -0.40 -2.23 16 29 C 0.13 1.60 6.92 -38.73 -0.27 1.34 16 30 O -0.30 -3.48 10.81 -19.73 -0.21 -3.69 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.14 1.83 7.66 -52.49 -0.40 1.43 16 37 H 0.41 7.09 6.42 -40.82 -0.26 6.83 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.06 1.45 7.21 -51.93 -0.37 1.07 16 42 H 0.05 1.12 7.61 -51.93 -0.40 0.72 16 43 H 0.38 4.59 9.11 45.56 0.42 5.01 16 44 H 0.14 1.79 6.40 -52.49 -0.34 1.46 16 45 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -32.56 369.73 -9.10 -41.66 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.51 Total: 10.31 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.31 Total: 3.00 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.25 Total: -53.04 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.58 Total: -24.23 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.56 -9.10 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083863740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.741 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds