Wall clock time and date at job start Tue Mar 31 2020 17:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.65946 * 2 1 4 4 C 1.54701 * 110.74508 * 123.20120 * 2 1 3 5 5 C 1.51684 * 101.90158 * 93.16783 * 4 2 1 6 6 C 1.37309 * 132.06390 * 195.86893 * 5 4 2 7 7 C 1.39809 * 119.85776 * 179.70429 * 6 5 4 8 8 C 1.47603 * 120.26547 * 179.77063 * 7 6 5 9 9 O 1.21589 * 119.99929 * 359.70874 * 8 7 6 10 10 N 1.34773 * 120.00153 * 179.72226 * 8 7 6 11 11 C 1.46501 * 120.00176 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88331 * 31.11616 * 11 10 8 13 13 C 1.55127 * 111.22198 * 267.20309 * 11 10 8 14 14 N 1.47429 * 104.72314 * 279.17597 * 13 11 10 15 15 C 1.36929 * 125.64895 * 155.82191 * 14 13 11 16 16 H 1.08004 * 120.00523 * 4.89490 * 15 14 13 17 17 C 1.38816 * 119.99814 * 184.90034 * 15 14 13 18 18 N 1.31619 * 120.00448 * 352.94234 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 172.94295 * 17 15 14 20 20 H 1.48497 * 109.47426 * 275.01012 * 19 17 15 21 21 H 1.48502 * 109.47087 * 35.00888 * 19 17 15 22 22 H 1.48506 * 109.47330 * 155.00688 * 19 17 15 23 23 C 1.47029 * 108.69958 * 335.55383 * 14 13 11 24 24 C 1.54324 * 107.27042 * 1.29015 * 23 14 13 25 25 H 1.09001 * 110.71187 * 263.64648 * 24 23 14 26 26 O 1.42899 * 110.71728 * 140.55705 * 24 23 14 27 27 C 1.39758 * 119.46577 * 359.48367 * 7 6 5 28 28 C 1.37467 * 120.20287 * 0.39546 * 27 7 6 29 29 C 1.39189 * 106.99826 * 15.38822 * 5 4 2 30 30 O 1.35997 * 111.16837 * 1.11690 * 29 5 4 31 31 H 1.08996 * 109.46824 * 296.79227 * 1 2 3 32 32 H 1.08996 * 109.46840 * 56.80041 * 1 2 3 33 33 H 1.09004 * 109.46836 * 176.79620 * 1 2 3 34 34 H 1.09006 * 110.94487 * 335.02275 * 4 2 1 35 35 H 1.08994 * 110.97604 * 211.33202 * 4 2 1 36 36 H 1.07998 * 120.07090 * 359.46040 * 6 5 4 37 37 H 0.97002 * 119.99746 * 359.97438 * 10 8 7 38 38 H 1.08998 * 110.49868 * 160.33431 * 13 11 10 39 39 H 1.09001 * 110.34461 * 37.93975 * 13 11 10 40 40 H 0.96993 * 120.00358 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.87727 * 120.70539 * 23 14 13 42 42 H 1.09001 * 109.87996 * 241.86611 * 23 14 13 43 43 H 0.96705 * 114.00287 * 61.45141 * 26 24 23 44 44 H 1.07998 * 119.89199 * 180.41194 * 27 7 6 45 45 H 1.07999 * 119.78045 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0780 -0.7922 1.2105 5 6 2.2655 -2.1765 0.6195 6 6 2.4484 -3.4075 1.1998 7 6 2.5911 -4.5419 0.3952 8 6 2.7931 -5.8688 1.0094 9 8 2.8413 -5.9777 2.2194 10 7 2.9244 -6.9597 0.2289 11 6 3.1255 -8.2766 0.8384 12 1 2.6289 -8.3365 1.8068 13 6 4.6348 -8.6105 0.9687 14 7 5.0306 -9.0848 -0.3700 15 6 6.2991 -9.0547 -0.8845 16 1 7.1247 -8.7320 -0.2675 17 6 6.5241 -9.4389 -2.1993 18 7 5.5467 -9.9626 -2.9084 19 14 8.2141 -9.2128 -2.9623 20 1 8.3362 -7.8318 -3.4945 21 1 9.2575 -9.4396 -1.9303 22 1 8.3922 -10.1872 -4.0687 23 6 3.8385 -9.6013 -1.0585 24 6 2.6394 -9.4069 -0.1067 25 1 2.4387 -10.3210 0.4521 26 8 1.4794 -8.9952 -0.8326 27 6 2.5348 -4.4103 -0.9950 28 6 2.3488 -3.1736 -1.5656 29 6 2.2145 -2.0384 -0.7646 30 8 2.0429 -0.7376 -1.1223 31 1 -0.3633 0.4632 0.9173 32 1 -0.3633 0.5627 -0.8599 33 1 -0.3633 -1.0261 -0.0574 34 1 1.3531 -0.8110 2.0244 35 1 3.0292 -0.3806 1.5480 36 1 2.4859 -3.4986 2.2753 37 1 2.8858 -6.8728 -0.7365 38 1 4.7897 -9.3945 1.7100 39 1 5.1988 -7.7171 1.2367 40 1 5.7040 -10.2314 -3.8270 41 1 3.6734 -9.0451 -1.9813 42 1 3.9683 -10.6607 -1.2800 43 1 1.1807 -9.6355 -1.4929 44 1 2.6375 -5.2830 -1.6228 45 1 2.3060 -3.0798 -2.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083863740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:05 Heat of formation + Delta-G solvation = -81.468153 kcal Electronic energy + Delta-G solvation = -28620.402554 eV Core-core repulsion = 24603.153485 eV Total energy + Delta-G solvation = -4017.249069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34105 -41.10614 -39.49724 -38.05812 -36.61211 -35.34244 -34.19706 -33.59375 -31.91913 -31.43939 -30.13406 -28.83678 -27.72591 -26.39213 -24.88148 -23.15604 -22.57164 -22.32362 -21.85127 -21.14324 -19.20180 -18.65896 -18.24479 -18.10497 -17.52291 -17.26463 -16.87451 -16.44147 -16.09881 -15.88634 -15.65160 -15.21696 -15.02049 -14.72019 -14.55156 -14.44224 -14.19747 -13.99047 -13.79174 -13.63123 -13.52474 -13.21154 -13.15300 -13.11245 -12.98253 -12.75357 -12.53466 -12.15418 -12.04284 -11.89704 -11.85261 -11.77828 -11.71839 -11.05806 -10.83774 -10.74659 -10.10376 -10.02584 -9.24786 -8.89639 -7.88049 -5.21569 -0.23916 0.23177 1.46224 1.47744 1.55117 1.74293 2.12767 2.20935 2.47375 2.73848 3.15668 3.32209 3.38468 3.53565 3.59470 3.71018 3.82456 3.87398 3.95200 3.96708 4.09627 4.14302 4.27240 4.36140 4.45866 4.57164 4.62162 4.65332 4.77704 4.81175 4.83584 4.87325 4.91179 5.03837 5.10478 5.21831 5.22864 5.26154 5.39546 5.42177 5.49914 5.53923 5.69969 6.07553 6.15838 6.55357 6.87544 7.08262 7.18802 7.72471 8.36248 9.21843 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.003093 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.934021 B = 9051.795113 C = 9967.993387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.145 0.855 4 C -0.102 4.102 5 C -0.188 4.188 6 C -0.018 4.018 7 C -0.178 4.178 8 C 0.561 3.439 9 O -0.583 6.583 10 N -0.685 5.685 11 C 0.147 3.853 12 H 0.104 0.896 13 C 0.122 3.878 14 N -0.617 5.617 15 C -0.243 4.243 16 H 0.076 0.924 17 C -0.055 4.055 18 N -0.942 5.942 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.293 1.293 23 C 0.160 3.840 24 C 0.086 3.914 25 H 0.092 0.908 26 O -0.562 6.562 27 C -0.046 4.046 28 C -0.151 4.151 29 C 0.126 3.874 30 O -0.310 6.310 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.249 0.751 41 H 0.032 0.968 42 H 0.017 0.983 43 H 0.396 0.604 44 H 0.141 0.859 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.501 17.439 5.051 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.162 0.838 4 C -0.138 4.138 5 C -0.188 4.188 6 C -0.037 4.037 7 C -0.181 4.181 8 C 0.350 3.650 9 O -0.465 6.465 10 N -0.334 5.334 11 C 0.040 3.960 12 H 0.122 0.878 13 C -0.004 4.004 14 N -0.344 5.344 15 C -0.372 4.372 16 H 0.093 0.907 17 C -0.249 4.249 18 N -0.591 5.591 19 Si 0.801 3.199 20 H -0.213 1.213 21 H -0.200 1.200 22 H -0.219 1.219 23 C 0.035 3.965 24 C 0.026 3.974 25 H 0.109 0.891 26 O -0.369 6.369 27 C -0.065 4.065 28 C -0.169 4.169 29 C 0.079 3.921 30 O -0.224 6.224 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.244 0.756 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.246 0.754 44 H 0.158 0.842 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.288 17.919 5.872 22.507 hybrid contribution 1.122 -0.978 -1.351 2.010 sum -11.166 16.941 4.521 20.788 Atomic orbital electron populations 1.22271 0.93175 1.02619 1.04594 1.23825 0.95600 0.97146 0.81883 0.83771 1.22007 1.04126 0.88686 0.99017 1.20960 1.07600 0.96263 0.94025 1.20351 0.93479 0.89415 1.00438 1.19716 1.11027 0.92996 0.94354 1.18393 0.75649 0.84720 0.86234 1.90697 1.53798 1.86985 1.15060 1.45431 1.71330 1.06020 1.10630 1.22120 0.95268 0.81702 0.96898 0.87776 1.22156 0.93185 0.97020 0.88049 1.44519 1.04633 1.72211 1.13069 1.19324 0.84713 1.38161 0.94997 0.90661 1.25506 1.01202 1.01143 0.97005 1.70103 1.32292 1.47345 1.09331 0.85199 0.79776 0.77087 0.77877 1.21345 1.19973 1.21904 1.21678 0.84628 0.96828 0.93408 1.23253 0.85535 0.95965 0.92674 0.89080 1.86380 1.44385 1.50111 1.56052 1.21147 0.94269 0.97728 0.93312 1.20363 1.06708 0.88827 1.01051 1.20003 0.93530 0.85437 0.93113 1.86851 1.79426 1.16092 1.40035 0.88207 0.90842 0.93539 0.86876 0.87700 0.84576 0.75638 0.93802 0.94600 0.94213 0.95018 0.96482 0.75413 0.84169 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.51 71.98 0.68 -1.16 16 2 C 0.07 0.92 4.30 31.18 0.13 1.06 16 3 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.10 -1.45 6.65 30.74 0.20 -1.24 16 5 C -0.19 -4.27 6.25 -19.54 -0.12 -4.40 16 6 C -0.02 -0.49 9.58 22.43 0.21 -0.27 16 7 C -0.18 -5.47 5.88 -20.06 -0.12 -5.59 16 8 C 0.56 20.32 7.77 86.72 0.67 20.99 16 9 O -0.58 -23.89 16.00 -4.00 -0.06 -23.95 16 10 N -0.69 -24.62 4.77 -438.71 -2.09 -26.71 16 11 C 0.15 5.38 3.31 46.46 0.15 5.53 16 12 H 0.10 3.68 7.54 -2.39 -0.02 3.66 16 13 C 0.12 5.17 6.95 86.93 0.60 5.78 16 14 N -0.62 -30.68 3.39 -691.52 -2.35 -33.03 16 15 C -0.24 -13.43 10.27 84.04 0.86 -12.57 16 16 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 17 C -0.05 -3.03 5.48 84.86 0.46 -2.56 16 18 N -0.94 -53.83 10.36 21.65 0.22 -53.60 16 19 Si 0.97 45.11 29.56 68.60 2.03 47.13 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 C 0.16 7.27 5.14 86.73 0.45 7.71 16 24 C 0.09 2.99 4.12 31.78 0.13 3.12 16 25 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 26 O -0.56 -17.05 12.67 -148.98 -1.89 -18.94 16 27 C -0.05 -1.26 9.52 22.46 0.21 -1.04 16 28 C -0.15 -3.72 10.05 22.41 0.23 -3.50 16 29 C 0.13 3.02 6.92 22.82 0.16 3.18 16 30 O -0.31 -6.59 10.81 -93.51 -1.01 -7.61 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.69 8.08 -2.38 -0.02 0.67 16 34 H 0.11 1.19 7.92 -2.38 -0.02 1.17 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.14 3.65 7.66 -2.91 -0.02 3.62 16 37 H 0.41 14.40 6.42 -92.71 -0.60 13.80 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.03 1.60 7.21 -2.39 -0.02 1.58 16 42 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 43 H 0.40 8.99 9.11 -74.05 -0.67 8.31 16 44 H 0.14 3.69 6.40 -2.91 -0.02 3.67 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -70.81 369.73 -0.45 -71.26 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.23 Total: 30.42 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 4.93 Total: 15.02 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.21 Total: -113.34 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.96 Total: -50.50 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.81 -0.45 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083863740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.206 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds