Wall clock time and date at job start Tue Mar 31 2020 17:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.66451 * 2 1 4 4 C 1.54706 * 110.74329 * 236.58949 * 2 1 3 5 5 C 1.51669 * 101.89642 * 267.05090 * 4 2 1 6 6 C 1.37305 * 132.06985 * 164.58394 * 5 4 2 7 7 C 1.39807 * 119.86044 * 180.74772 * 6 5 4 8 8 C 1.47606 * 120.26671 * 179.67541 * 7 6 5 9 9 O 1.21586 * 119.99892 * 359.71953 * 8 7 6 10 10 N 1.34771 * 119.99927 * 179.72458 * 8 7 6 11 11 C 1.46504 * 120.00205 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.88427 * 31.11557 * 11 10 8 13 13 C 1.55131 * 111.22809 * 267.20631 * 11 10 8 14 14 N 1.47422 * 104.72316 * 279.17742 * 13 11 10 15 15 C 1.36931 * 125.65211 * 155.81627 * 14 13 11 16 16 H 1.08002 * 120.00103 * 359.71756 * 15 14 13 17 17 C 1.38812 * 120.00429 * 179.71258 * 15 14 13 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00576 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00326 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00037 * 19 17 15 23 23 C 1.47026 * 108.70212 * 335.54953 * 14 13 11 24 24 C 1.54333 * 107.26936 * 1.28776 * 23 14 13 25 25 H 1.08996 * 110.71849 * 263.82777 * 24 23 14 26 26 O 1.42905 * 110.71767 * 140.73335 * 24 23 14 27 27 C 1.39747 * 119.46601 * 359.39831 * 7 6 5 28 28 C 1.37464 * 120.20617 * 0.12416 * 27 7 6 29 29 C 1.39185 * 106.99685 * 344.47414 * 5 4 2 30 30 O 1.35999 * 111.17856 * 359.08733 * 29 5 4 31 31 H 1.08997 * 109.46720 * 298.26219 * 1 2 3 32 32 H 1.09003 * 109.46279 * 58.25670 * 1 2 3 33 33 H 1.08998 * 109.47236 * 178.25913 * 1 2 3 34 34 H 1.09000 * 110.93733 * 25.19870 * 4 2 1 35 35 H 1.08996 * 110.94157 * 148.89242 * 4 2 1 36 36 H 1.08001 * 120.06954 * 0.48797 * 6 5 4 37 37 H 0.97006 * 120.00748 * 359.97438 * 10 8 7 38 38 H 1.08992 * 110.49878 * 160.32991 * 13 11 10 39 39 H 1.09001 * 110.33913 * 37.93950 * 13 11 10 40 40 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.88411 * 120.70256 * 23 14 13 42 42 H 1.08998 * 109.88161 * 241.87725 * 23 14 13 43 43 H 0.96700 * 113.99674 * 61.45547 * 26 24 23 44 44 H 1.08000 * 119.90122 * 180.14431 * 27 7 6 45 45 H 1.08005 * 119.79225 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0780 -0.7966 -1.2077 5 6 2.2601 -2.1800 -0.6131 6 6 2.4483 -3.4118 -1.1897 7 6 2.5742 -4.5463 -0.3826 8 6 2.7697 -5.8758 -0.9932 9 8 2.8167 -5.9882 -2.2030 10 7 2.8960 -6.9652 -0.2098 11 6 3.0894 -8.2849 -0.8159 12 1 3.6343 -8.2044 -1.7566 13 6 1.7349 -9.0127 -1.0213 14 7 1.4113 -9.5819 0.2995 15 6 0.1561 -9.8971 0.7470 16 1 -0.7017 -9.7270 0.1131 17 6 -0.0139 -10.4352 2.0152 18 7 1.0314 -10.6420 2.7878 19 14 -1.7263 -10.8644 2.6259 20 1 -2.3146 -9.6889 3.3166 21 1 -2.5830 -11.2410 1.4728 22 1 -1.6425 -12.0047 3.5735 23 6 2.6601 -9.7613 1.0543 24 6 3.8113 -9.2468 0.1644 25 1 4.2780 -10.0699 -0.3765 26 8 4.7796 -8.5444 0.9463 27 6 2.5193 -4.4107 1.0072 28 6 2.3404 -3.1715 1.5747 29 6 2.2100 -2.0379 0.7706 30 8 2.0391 -0.7360 1.1250 31 1 -0.3632 0.4866 0.9051 32 1 -0.3632 0.5407 -0.8740 33 1 -0.3633 -1.0272 -0.0312 34 1 1.3545 -0.8151 -2.0228 35 1 3.0310 -0.3883 -1.5437 36 1 2.4949 -3.5046 -2.2647 37 1 2.8588 -6.8756 0.7554 38 1 1.8363 -9.8059 -1.7618 39 1 0.9661 -8.3030 -1.3272 40 1 0.9126 -11.0178 3.6742 41 1 2.6205 -9.1853 1.9789 42 1 2.8090 -10.8174 1.2791 43 1 5.2041 -9.0859 1.6258 44 1 2.6181 -5.2822 1.6375 45 1 2.2994 -3.0744 2.6496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083863741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:11 Heat of formation + Delta-G solvation = -81.532700 kcal Electronic energy + Delta-G solvation = -28624.001030 eV Core-core repulsion = 24606.749162 eV Total energy + Delta-G solvation = -4017.251868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.34139 -41.10715 -39.49769 -38.05942 -36.61417 -35.34595 -34.19694 -33.58929 -31.92266 -31.43739 -30.13444 -28.83597 -27.73016 -26.39348 -24.88269 -23.15776 -22.57199 -22.32367 -21.85044 -21.14544 -19.19983 -18.66523 -18.24471 -18.10435 -17.53105 -17.25512 -16.88257 -16.47870 -16.01757 -15.89504 -15.69270 -15.21921 -15.00172 -14.71574 -14.55241 -14.43857 -14.22754 -13.98164 -13.74088 -13.63367 -13.57345 -13.22276 -13.12733 -13.11611 -12.98673 -12.75127 -12.53427 -12.16279 -12.03538 -11.91594 -11.84772 -11.78755 -11.70044 -11.05909 -10.83903 -10.76378 -10.10897 -10.02575 -9.24745 -8.89772 -7.86762 -5.21639 -0.23847 0.23258 1.46874 1.47115 1.55897 1.74118 2.11215 2.22362 2.47583 2.74320 3.15006 3.34228 3.38602 3.53045 3.59427 3.70877 3.82282 3.86930 3.94374 3.96726 4.09638 4.14308 4.26811 4.36238 4.45635 4.57027 4.61708 4.65106 4.77161 4.80483 4.83254 4.87281 4.91052 5.03388 5.10450 5.21511 5.22640 5.25912 5.40938 5.42118 5.48577 5.53601 5.70248 6.07474 6.15897 6.55212 6.87521 7.08557 7.18645 7.72644 8.35981 9.22713 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003178 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.920842 B = 8809.036949 C = 9896.302984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.148 0.852 4 C -0.101 4.101 5 C -0.188 4.188 6 C -0.018 4.018 7 C -0.178 4.178 8 C 0.561 3.439 9 O -0.583 6.583 10 N -0.685 5.685 11 C 0.146 3.854 12 H 0.104 0.896 13 C 0.123 3.877 14 N -0.617 5.617 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.056 4.056 18 N -0.944 5.944 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.274 1.274 22 H -0.292 1.292 23 C 0.161 3.839 24 C 0.086 3.914 25 H 0.091 0.909 26 O -0.562 6.562 27 C -0.046 4.046 28 C -0.151 4.151 29 C 0.126 3.874 30 O -0.310 6.310 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.407 0.593 38 H 0.045 0.955 39 H 0.035 0.965 40 H 0.248 0.752 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.396 0.604 44 H 0.141 0.859 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.040 19.927 -4.601 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.165 0.835 4 C -0.138 4.138 5 C -0.189 4.189 6 C -0.037 4.037 7 C -0.181 4.181 8 C 0.350 3.650 9 O -0.465 6.465 10 N -0.334 5.334 11 C 0.040 3.960 12 H 0.122 0.878 13 C -0.004 4.004 14 N -0.345 5.345 15 C -0.371 4.371 16 H 0.094 0.906 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.199 1.199 22 H -0.219 1.219 23 C 0.036 3.964 24 C 0.025 3.975 25 H 0.109 0.891 26 O -0.369 6.369 27 C -0.064 4.064 28 C -0.169 4.169 29 C 0.079 3.921 30 O -0.224 6.224 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.244 0.756 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.246 0.754 44 H 0.158 0.842 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.850 20.344 -5.438 21.610 hybrid contribution -0.891 -1.327 1.277 2.046 sum 3.958 19.017 -4.162 19.865 Atomic orbital electron populations 1.22286 0.93578 1.02550 1.04486 1.23828 0.95359 0.97263 0.81903 0.83492 1.21994 1.04207 0.88652 0.98911 1.20955 1.07571 0.96289 0.94051 1.20349 0.93500 0.89418 1.00425 1.19710 1.11149 0.92883 0.94367 1.18396 0.75647 0.84738 0.86216 1.90697 1.53584 1.87188 1.15076 1.45435 1.71601 1.05780 1.10617 1.22132 0.95432 0.81787 0.96671 0.87794 1.22148 0.94712 0.95146 0.88365 1.44519 1.02846 1.74272 1.12813 1.19355 0.84289 1.34969 0.98514 0.90628 1.25503 1.00868 1.01644 0.96959 1.70108 1.28877 1.50762 1.09549 0.85148 0.79653 0.77112 0.77817 1.21418 1.19899 1.21865 1.21659 0.83943 0.97792 0.93003 1.23257 0.88814 0.93390 0.92019 0.89136 1.86377 1.56300 1.42080 1.52164 1.21144 0.94331 0.97639 0.93331 1.20366 1.06719 0.88808 1.01049 1.20007 0.93495 0.85438 0.93126 1.86848 1.79515 1.16043 1.39948 0.91007 0.88133 0.93806 0.87139 0.87316 0.84588 0.75631 0.93780 0.94613 0.94257 0.95193 0.96309 0.75403 0.84161 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.49 71.98 0.68 -1.41 16 2 C 0.07 0.95 4.31 31.18 0.13 1.08 16 3 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.10 -1.43 6.65 30.74 0.20 -1.22 16 5 C -0.19 -4.26 6.25 -19.55 -0.12 -4.39 16 6 C -0.02 -0.49 9.58 22.43 0.21 -0.27 16 7 C -0.18 -5.47 5.88 -20.06 -0.12 -5.59 16 8 C 0.56 20.30 7.77 86.72 0.67 20.97 16 9 O -0.58 -23.89 16.00 -3.99 -0.06 -23.95 16 10 N -0.69 -24.61 4.77 -438.68 -2.09 -26.70 16 11 C 0.15 5.37 3.31 46.46 0.15 5.52 16 12 H 0.10 3.68 7.54 -2.38 -0.02 3.66 16 13 C 0.12 5.18 6.95 86.93 0.60 5.79 16 14 N -0.62 -30.67 3.39 -691.54 -2.35 -33.02 16 15 C -0.24 -13.37 10.28 84.03 0.86 -12.50 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.06 -3.10 5.49 84.86 0.47 -2.63 16 18 N -0.94 -53.91 10.31 21.65 0.22 -53.69 16 19 Si 0.97 45.00 29.55 68.60 2.03 47.02 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 C 0.16 7.34 5.13 86.73 0.44 7.79 16 24 C 0.09 2.98 4.11 31.79 0.13 3.11 16 25 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 26 O -0.56 -17.12 12.69 -148.98 -1.89 -19.02 16 27 C -0.05 -1.25 9.51 22.45 0.21 -1.04 16 28 C -0.15 -3.71 10.05 22.42 0.23 -3.48 16 29 C 0.13 3.01 6.95 22.83 0.16 3.17 16 30 O -0.31 -6.54 10.81 -93.54 -1.01 -7.55 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 34 H 0.11 1.22 7.92 -2.39 -0.02 1.20 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.14 3.64 7.66 -2.91 -0.02 3.62 16 37 H 0.41 14.37 6.43 -92.70 -0.60 13.78 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 41 H 0.03 1.51 7.30 -2.39 -0.02 1.50 16 42 H 0.02 0.95 7.51 -2.39 -0.02 0.93 16 43 H 0.40 9.04 9.11 -74.06 -0.67 8.37 16 44 H 0.14 3.68 6.40 -2.91 -0.02 3.66 16 45 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.73 369.74 -0.46 -71.19 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.24 Total: 30.82 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 4.93 Total: 14.89 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.22 Total: -113.40 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.97 Total: -50.51 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.73 -0.46 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083863741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.341 kcal (2) G-P(sol) polarization free energy of solvation -70.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds