Wall clock time and date at job start Tue Mar 31 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99644 * 2 1 4 4 C 1.54321 * 109.88664 * 238.90546 * 2 1 3 5 5 H 1.09008 * 110.86650 * 336.82211 * 4 2 1 6 6 N 1.46500 * 110.72478 * 100.02246 * 4 2 1 7 7 C 1.34773 * 120.00431 * 199.98066 * 6 4 2 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 C 1.47543 * 120.00239 * 179.72705 * 7 6 4 10 10 C 1.39771 * 120.14027 * 0.26838 * 9 7 6 11 11 C 1.37747 * 119.94820 * 179.97438 * 10 9 7 12 12 C 1.38484 * 120.33616 * 0.06448 * 11 10 9 13 13 C 1.38600 * 120.40807 * 0.02562 * 12 11 10 14 14 C 1.38994 * 119.89959 * 359.57894 * 13 12 11 15 15 O 1.35813 * 120.86729 * 180.62052 * 14 13 12 16 16 C 1.43181 * 116.71817 * 342.79968 * 15 14 13 17 17 C 1.53475 * 108.22409 * 46.29630 * 16 15 14 18 18 O 1.36135 * 119.37606 * 179.61346 * 13 12 11 19 19 C 1.55150 * 102.94381 * 218.38864 * 4 2 1 20 20 C 1.54910 * 101.58155 * 35.49867 * 19 4 2 21 21 N 1.47026 * 109.88349 * 121.09270 * 2 1 3 22 22 C 1.36929 * 125.64597 * 298.32852 * 21 2 1 23 23 H 1.07998 * 120.00724 * 0.02562 * 22 21 2 24 24 C 1.38815 * 119.99597 * 180.02562 * 22 21 2 25 25 N 1.31612 * 120.00137 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00015 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47042 * 89.99594 * 26 24 22 28 28 H 1.48500 * 109.47348 * 209.99719 * 26 24 22 29 29 H 1.48500 * 109.47167 * 330.00024 * 26 24 22 30 30 H 1.09002 * 109.46939 * 181.09197 * 1 2 3 31 31 H 1.09001 * 109.47413 * 301.09682 * 1 2 3 32 32 H 1.08999 * 109.47141 * 61.10060 * 1 2 3 33 33 H 0.97000 * 119.99456 * 19.97628 * 6 4 2 34 34 H 1.08000 * 120.02179 * 359.95997 * 10 9 7 35 35 H 1.08001 * 119.82985 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.79957 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.71435 * 165.98052 * 16 15 14 38 38 H 1.09001 * 109.71412 * 286.57561 * 16 15 14 39 39 H 1.08997 * 109.70844 * 60.03434 * 17 16 15 40 40 H 1.09010 * 109.70451 * 180.60309 * 17 16 15 41 41 H 1.09001 * 111.00883 * 153.57212 * 19 4 2 42 42 H 1.08998 * 111.00444 * 277.38616 * 19 4 2 43 43 H 1.09007 * 110.36542 * 81.83341 * 20 19 4 44 44 H 1.09004 * 110.36569 * 204.15109 * 20 19 4 45 45 H 0.97006 * 120.00503 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0550 -0.7495 -1.2427 5 1 1.3065 -1.4458 -1.6210 6 7 2.4556 0.1961 -2.2875 7 6 2.5560 -0.2159 -3.5668 8 8 2.3145 -1.3726 -3.8537 9 6 2.9536 0.7378 -4.6200 10 6 3.2322 2.0680 -4.2934 11 6 3.6036 2.9549 -5.2798 12 6 3.7015 2.5363 -6.5962 13 6 3.4267 1.2210 -6.9363 14 6 3.0588 0.3128 -5.9506 15 8 2.7973 -0.9835 -6.2601 16 6 2.5457 -1.2781 -7.6385 17 6 3.6181 -0.5764 -8.4828 18 8 3.5220 0.8341 -8.2381 19 6 3.2877 -1.5141 -0.6924 20 6 2.8146 -1.8793 0.7368 21 7 2.0301 -0.7140 1.1840 22 6 1.8049 -0.3555 2.4862 23 1 1.2141 0.5201 2.7109 24 6 2.3362 -1.1177 3.5176 25 7 3.0558 -2.1851 3.2438 26 14 2.0297 -0.6284 5.2941 27 1 0.7896 -1.2841 5.7813 28 1 3.1785 -1.0581 6.1312 29 1 1.8773 0.8461 5.3822 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3634 0.5308 0.8800 32 1 -0.3633 0.4966 -0.8997 33 1 2.6485 1.1187 -2.0586 34 1 3.1562 2.4001 -3.2686 35 1 3.8189 3.9822 -5.0252 36 1 3.9931 3.2391 -7.3626 37 1 2.5972 -2.3549 -7.7996 38 1 1.5582 -0.9113 -7.9185 39 1 4.6056 -0.9402 -8.1991 40 1 3.4426 -0.7764 -9.5400 41 1 3.4854 -2.4109 -1.2795 42 1 4.1656 -0.8689 -0.6610 43 1 2.1887 -2.7715 0.7129 44 1 3.6717 -2.0337 1.3923 45 1 3.4268 -2.7180 3.9646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088604528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:17 Heat of formation + Delta-G solvation = -45.143230 kcal Electronic energy + Delta-G solvation = -28736.654338 eV Core-core repulsion = 24720.980436 eV Total energy + Delta-G solvation = -4015.673902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55744 -39.63285 -37.90508 -37.58673 -36.98707 -33.99464 -32.19892 -31.43124 -31.00300 -30.30079 -28.71876 -28.49121 -25.41234 -24.76374 -23.99146 -23.57285 -21.28563 -20.73042 -20.03861 -19.80178 -18.88954 -17.72040 -17.43577 -16.74314 -16.45881 -15.77829 -15.69218 -15.29635 -14.92915 -14.74132 -14.55292 -14.39185 -14.14970 -13.88595 -13.83010 -13.31456 -13.24762 -12.73079 -12.44263 -12.20537 -12.10003 -11.91234 -11.52972 -11.45896 -11.36641 -11.11148 -10.91264 -10.85018 -10.80334 -10.47107 -10.35626 -10.07833 -9.73690 -9.61097 -9.47919 -8.95042 -8.65282 -8.51735 -8.33905 -6.85909 -5.63879 -3.06813 0.62939 1.04109 2.69085 2.94816 2.97309 3.32677 3.40514 3.45628 3.47375 3.72604 3.92808 4.34509 4.49577 4.50153 4.56595 4.71150 4.80913 4.86285 5.04919 5.15765 5.20277 5.29997 5.44207 5.45077 5.58175 5.67421 5.74506 5.79368 5.86865 6.08832 6.15316 6.27762 6.29246 6.35399 6.39528 6.58134 6.61579 6.65443 6.77380 6.90069 7.12379 7.16892 7.54949 7.64173 7.80250 7.87437 8.36516 8.50584 9.22051 9.83030 10.47250 11.39346 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002566 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.296401 B =10910.526007 C =11391.655094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.138 3.862 5 H 0.092 0.908 6 N -0.712 5.712 7 C 0.556 3.444 8 O -0.519 6.519 9 C -0.129 4.129 10 C -0.082 4.082 11 C -0.125 4.125 12 C -0.092 4.092 13 C 0.035 3.965 14 C 0.108 3.892 15 O -0.268 6.268 16 C 0.014 3.986 17 C 0.019 3.981 18 O -0.307 6.307 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.395 0.605 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.014 0.986 44 H 0.109 0.891 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 8.254 -23.480 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.364 5.364 7 C 0.342 3.658 8 O -0.396 6.396 9 C -0.133 4.133 10 C -0.101 4.101 11 C -0.143 4.143 12 C -0.111 4.111 13 C -0.010 4.010 14 C 0.060 3.940 15 O -0.180 6.180 16 C -0.061 4.061 17 C -0.057 4.057 18 O -0.222 6.222 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.231 0.769 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.126 0.874 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.392 7.256 -23.482 24.617 hybrid contribution -0.145 0.507 0.817 0.973 sum 1.247 7.764 -22.665 23.990 Atomic orbital electron populations 1.22243 0.97876 1.01464 0.99901 1.20983 0.92583 0.94755 0.86923 0.94673 1.22137 0.97619 0.90728 0.86194 0.89042 1.45975 1.69563 1.13991 1.06873 1.17865 0.78234 0.87466 0.82190 1.90812 1.48767 1.18090 1.81895 1.19482 1.07695 0.94661 0.91506 1.21198 0.97475 0.91158 1.00228 1.20829 1.01731 1.00294 0.91488 1.20588 1.00176 0.93146 0.97149 1.18791 1.04135 0.94525 0.83553 1.18909 0.97722 0.84604 0.92724 1.86643 1.84431 1.21174 1.25775 1.23728 0.98700 1.03011 0.80703 1.23725 1.00016 0.79640 1.02283 1.86388 1.89647 1.24691 1.21469 1.23397 0.96755 0.99424 0.99664 1.21951 0.97329 0.88348 0.89573 1.44491 1.59254 1.28245 1.00044 1.19018 1.27083 1.08173 0.80522 0.90463 1.24788 1.00387 0.97419 0.98027 1.69799 1.39104 1.17865 1.30139 0.86086 0.77228 0.77702 0.84540 1.21671 1.21695 1.20732 0.92913 0.92720 0.94306 0.76945 0.84472 0.84378 0.84500 0.85815 0.90389 0.90210 0.85994 0.91952 0.92017 0.96783 0.87350 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 2 C 0.16 3.14 3.48 -66.95 -0.23 2.91 16 3 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 4 C 0.14 2.58 2.76 -66.10 -0.18 2.40 16 5 H 0.09 1.85 7.41 -51.92 -0.38 1.46 16 6 N -0.71 -11.11 5.15 -53.07 -0.27 -11.38 16 7 C 0.56 9.27 7.76 -12.47 -0.10 9.17 16 8 O -0.52 -10.52 14.82 -16.87 -0.25 -10.77 16 9 C -0.13 -1.78 5.89 -104.84 -0.62 -2.40 16 10 C -0.08 -0.84 9.53 -39.19 -0.37 -1.22 16 11 C -0.13 -1.07 10.02 -39.67 -0.40 -1.47 16 12 C -0.09 -0.86 9.95 -39.36 -0.39 -1.25 16 13 C 0.03 0.40 6.49 -39.17 -0.25 0.15 16 14 C 0.11 1.48 6.51 -38.61 -0.25 1.23 16 15 O -0.27 -3.82 8.42 -47.39 -0.40 -4.22 16 16 C 0.01 0.13 7.25 37.40 0.27 0.40 16 17 C 0.02 0.14 7.28 37.40 0.27 0.41 16 18 O -0.31 -3.17 10.43 -33.00 -0.34 -3.52 16 19 C -0.15 -3.13 6.77 -24.59 -0.17 -3.30 16 20 C 0.15 3.78 5.89 -2.53 -0.01 3.76 16 21 N -0.60 -14.89 3.13 -162.57 -0.51 -15.39 16 22 C -0.22 -5.97 9.89 -15.06 -0.15 -6.12 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 26 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 5.05 6.34 -40.82 -0.26 4.80 16 34 H 0.14 1.13 6.40 -52.49 -0.34 0.79 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.12 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -34.15 364.27 -9.39 -43.54 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.30 Total: 3.84 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.34 Total: 1.72 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.22 Total: -52.95 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.99 Total: -18.51 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.15 -9.39 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088604528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.608 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds