Wall clock time and date at job start Tue Mar 31 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99644 * 2 1 4 4 C 1.54321 * 109.88664 * 238.90546 * 2 1 3 5 5 H 1.09008 * 110.86650 * 336.82211 * 4 2 1 6 6 N 1.46500 * 110.72478 * 100.02246 * 4 2 1 7 7 C 1.34773 * 120.00431 * 199.98066 * 6 4 2 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 C 1.47543 * 120.00239 * 179.72705 * 7 6 4 10 10 C 1.39771 * 120.14027 * 0.26838 * 9 7 6 11 11 C 1.37747 * 119.94820 * 179.97438 * 10 9 7 12 12 C 1.38484 * 120.33616 * 0.06448 * 11 10 9 13 13 C 1.38600 * 120.40807 * 0.02562 * 12 11 10 14 14 C 1.38994 * 119.89959 * 359.57894 * 13 12 11 15 15 O 1.35813 * 120.86729 * 180.62052 * 14 13 12 16 16 C 1.43181 * 116.71817 * 342.79968 * 15 14 13 17 17 C 1.53475 * 108.22409 * 46.29630 * 16 15 14 18 18 O 1.36135 * 119.37606 * 179.61346 * 13 12 11 19 19 C 1.55150 * 102.94381 * 218.38864 * 4 2 1 20 20 C 1.54910 * 101.58155 * 35.49867 * 19 4 2 21 21 N 1.47026 * 109.88349 * 121.09270 * 2 1 3 22 22 C 1.36929 * 125.64597 * 298.32852 * 21 2 1 23 23 H 1.07998 * 120.00724 * 0.02562 * 22 21 2 24 24 C 1.38815 * 119.99597 * 180.02562 * 22 21 2 25 25 N 1.31612 * 120.00137 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00015 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47042 * 89.99594 * 26 24 22 28 28 H 1.48500 * 109.47348 * 209.99719 * 26 24 22 29 29 H 1.48500 * 109.47167 * 330.00024 * 26 24 22 30 30 H 1.09002 * 109.46939 * 181.09197 * 1 2 3 31 31 H 1.09001 * 109.47413 * 301.09682 * 1 2 3 32 32 H 1.08999 * 109.47141 * 61.10060 * 1 2 3 33 33 H 0.97000 * 119.99456 * 19.97628 * 6 4 2 34 34 H 1.08000 * 120.02179 * 359.95997 * 10 9 7 35 35 H 1.08001 * 119.82985 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.79957 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.71435 * 165.98052 * 16 15 14 38 38 H 1.09001 * 109.71412 * 286.57561 * 16 15 14 39 39 H 1.08997 * 109.70844 * 60.03434 * 17 16 15 40 40 H 1.09010 * 109.70451 * 180.60309 * 17 16 15 41 41 H 1.09001 * 111.00883 * 153.57212 * 19 4 2 42 42 H 1.08998 * 111.00444 * 277.38616 * 19 4 2 43 43 H 1.09007 * 110.36542 * 81.83341 * 20 19 4 44 44 H 1.09004 * 110.36569 * 204.15109 * 20 19 4 45 45 H 0.97006 * 120.00503 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0550 -0.7495 -1.2427 5 1 1.3065 -1.4458 -1.6210 6 7 2.4556 0.1961 -2.2875 7 6 2.5560 -0.2159 -3.5668 8 8 2.3145 -1.3726 -3.8537 9 6 2.9536 0.7378 -4.6200 10 6 3.2322 2.0680 -4.2934 11 6 3.6036 2.9549 -5.2798 12 6 3.7015 2.5363 -6.5962 13 6 3.4267 1.2210 -6.9363 14 6 3.0588 0.3128 -5.9506 15 8 2.7973 -0.9835 -6.2601 16 6 2.5457 -1.2781 -7.6385 17 6 3.6181 -0.5764 -8.4828 18 8 3.5220 0.8341 -8.2381 19 6 3.2877 -1.5141 -0.6924 20 6 2.8146 -1.8793 0.7368 21 7 2.0301 -0.7140 1.1840 22 6 1.8049 -0.3555 2.4862 23 1 1.2141 0.5201 2.7109 24 6 2.3362 -1.1177 3.5176 25 7 3.0558 -2.1851 3.2438 26 14 2.0297 -0.6284 5.2941 27 1 0.7896 -1.2841 5.7813 28 1 3.1785 -1.0581 6.1312 29 1 1.8773 0.8461 5.3822 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3634 0.5308 0.8800 32 1 -0.3633 0.4966 -0.8997 33 1 2.6485 1.1187 -2.0586 34 1 3.1562 2.4001 -3.2686 35 1 3.8189 3.9822 -5.0252 36 1 3.9931 3.2391 -7.3626 37 1 2.5972 -2.3549 -7.7996 38 1 1.5582 -0.9113 -7.9185 39 1 4.6056 -0.9402 -8.1991 40 1 3.4426 -0.7764 -9.5400 41 1 3.4854 -2.4109 -1.2795 42 1 4.1656 -0.8689 -0.6610 43 1 2.1887 -2.7715 0.7129 44 1 3.6717 -2.0337 1.3923 45 1 3.4268 -2.7180 3.9646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088604528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:16 Heat of formation + Delta-G solvation = -67.004597 kcal Electronic energy + Delta-G solvation = -28737.602318 eV Core-core repulsion = 24720.980436 eV Total energy + Delta-G solvation = -4016.621882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36794 -40.93319 -39.28076 -38.48395 -38.02881 -35.60779 -33.92995 -32.21466 -32.12852 -31.89560 -30.29848 -29.44356 -26.83349 -25.88656 -25.58971 -24.73911 -22.26647 -22.04990 -21.47257 -21.37035 -19.84071 -18.73063 -18.52765 -18.32535 -17.55529 -17.18905 -16.59578 -16.49323 -16.13983 -15.78065 -15.65084 -15.62005 -15.50957 -15.21072 -14.84663 -14.79767 -14.35768 -14.00524 -13.97556 -13.71203 -13.25042 -13.14141 -12.93517 -12.85052 -12.74787 -12.59779 -12.23739 -12.18613 -12.08682 -12.03899 -11.95381 -11.68830 -11.56298 -11.45593 -10.83515 -10.71824 -10.08652 -9.68518 -9.14369 -8.89296 -7.73214 -5.18539 -0.25212 0.26777 1.49591 1.51329 1.59767 1.82919 1.99828 2.11673 2.27424 2.53562 2.77180 3.22175 3.37420 3.52199 3.64100 3.82337 3.85661 3.90540 3.93374 3.96997 4.14793 4.20699 4.24408 4.35276 4.49870 4.52693 4.56389 4.62284 4.66628 4.68411 4.81630 4.93934 5.02064 5.05850 5.06162 5.13034 5.34555 5.36423 5.51170 5.59233 5.60328 5.63975 5.80509 5.87815 6.31114 6.33956 6.58360 7.12099 7.25701 7.79875 8.43994 9.28945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002566 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.296401 B =10910.526007 C =11391.655094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.057 0.943 4 C 0.155 3.845 5 H 0.076 0.924 6 N -0.700 5.700 7 C 0.556 3.444 8 O -0.564 6.564 9 C -0.159 4.159 10 C -0.077 4.077 11 C -0.114 4.114 12 C -0.084 4.084 13 C 0.023 3.977 14 C 0.085 3.915 15 O -0.306 6.306 16 C 0.005 3.995 17 C 0.020 3.980 18 O -0.315 6.315 19 C -0.139 4.139 20 C 0.159 3.841 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.952 5.952 26 Si 0.979 3.021 27 H -0.291 1.291 28 H -0.297 1.297 29 H -0.265 1.265 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.412 0.588 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.164 0.836 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.069 0.931 43 H -0.016 1.016 44 H 0.078 0.922 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 11.610 -25.061 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.074 0.926 4 C 0.049 3.951 5 H 0.094 0.906 6 N -0.352 5.352 7 C 0.345 3.655 8 O -0.444 6.444 9 C -0.163 4.163 10 C -0.096 4.096 11 C -0.131 4.131 12 C -0.103 4.103 13 C -0.022 4.022 14 C 0.038 3.962 15 O -0.219 6.219 16 C -0.069 4.069 17 C -0.055 4.055 18 O -0.230 6.230 19 C -0.178 4.178 20 C 0.034 3.966 21 N -0.338 5.338 22 C -0.354 4.354 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.808 3.192 27 H -0.218 1.218 28 H -0.224 1.224 29 H -0.190 1.190 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.195 0.805 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.176 0.824 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.002 0.998 44 H 0.096 0.904 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.436 10.676 -25.096 27.310 hybrid contribution -0.162 -0.513 1.177 1.294 sum 1.274 10.163 -23.920 26.020 Atomic orbital electron populations 1.22129 0.96460 1.00701 1.01319 1.21181 0.93547 0.95152 0.85530 0.92582 1.21705 0.96084 0.90811 0.86504 0.90618 1.45720 1.69347 1.14192 1.05989 1.18372 0.77052 0.87444 0.82662 1.90783 1.50803 1.20225 1.82580 1.19397 1.10605 0.95535 0.90729 1.21492 0.96412 0.89804 1.01876 1.21276 0.99702 1.01610 0.90558 1.21061 0.98305 0.92562 0.98345 1.19033 1.04476 0.95075 0.83615 1.19200 0.98746 0.84909 0.93387 1.86570 1.84785 1.22037 1.28553 1.24023 0.99425 1.04426 0.79073 1.23948 0.99376 0.78184 1.03959 1.86368 1.89602 1.26156 1.20851 1.23193 0.97765 0.99855 0.97023 1.21650 0.95718 0.87815 0.91445 1.44724 1.59699 1.28513 1.00908 1.19413 1.26260 1.08118 0.81609 0.89452 1.25630 1.00861 0.97757 1.02007 1.70048 1.40439 1.19047 1.30716 0.85058 0.76422 0.78097 0.79630 1.21816 1.22363 1.18979 0.94732 0.93056 0.91098 0.74977 0.82366 0.80493 0.81821 0.84075 0.90186 0.90255 0.82367 0.92108 0.91189 0.99839 0.90387 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.14 71.98 0.66 -4.65 16 2 C 0.15 6.01 3.48 45.34 0.16 6.17 16 3 H 0.06 2.02 7.69 -2.38 -0.02 2.00 16 4 C 0.15 5.78 2.76 46.18 0.13 5.91 16 5 H 0.08 3.12 7.41 -2.38 -0.02 3.10 16 6 N -0.70 -21.00 5.15 -440.07 -2.27 -23.27 16 7 C 0.56 18.48 7.76 86.70 0.67 19.15 16 8 O -0.56 -23.60 14.82 17.17 0.25 -23.35 16 9 C -0.16 -4.23 5.89 -20.01 -0.12 -4.34 16 10 C -0.08 -1.37 9.53 22.52 0.21 -1.15 16 11 C -0.11 -1.47 10.02 22.21 0.22 -1.25 16 12 C -0.08 -1.29 9.95 22.41 0.22 -1.06 16 13 C 0.02 0.49 6.49 22.54 0.15 0.64 16 14 C 0.09 2.30 6.51 22.90 0.15 2.45 16 15 O -0.31 -8.96 8.42 -64.46 -0.54 -9.51 16 16 C 0.01 0.09 7.25 72.14 0.52 0.62 16 17 C 0.02 0.27 7.28 72.14 0.52 0.79 16 18 O -0.31 -5.94 10.43 -82.83 -0.86 -6.80 16 19 C -0.14 -5.80 6.77 31.98 0.22 -5.58 16 20 C 0.16 8.19 5.89 86.86 0.51 8.70 16 21 N -0.61 -30.94 3.13 -668.25 -2.09 -33.03 16 22 C -0.23 -12.24 9.89 84.04 0.83 -11.41 16 23 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 24 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 25 N -0.95 -57.18 10.09 21.65 0.22 -56.96 16 26 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.87 8.04 -2.39 -0.02 1.86 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.41 9.49 6.34 -92.71 -0.59 8.90 16 34 H 0.16 1.99 6.40 -2.91 -0.02 1.97 16 35 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 36 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.16 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 43 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 44 H 0.08 4.51 5.87 -2.38 -0.01 4.50 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -77.78 364.27 2.69 -75.09 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.43 Total: 18.98 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.53 Total: 11.48 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.14 Total: -113.26 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.15 Total: -39.66 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.78 2.69 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088604528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.085 kcal (2) G-P(sol) polarization free energy of solvation -77.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds