Wall clock time and date at job start Tue Mar 31 2020 17:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 6 6 N 1.46495 * 110.72204 * 100.02119 * 4 2 1 7 7 C 1.34775 * 120.00176 * 205.00286 * 6 4 2 8 8 O 1.21287 * 119.99927 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99962 * 180.02562 * 7 6 4 10 10 H 1.09002 * 109.70614 * 304.39948 * 9 7 6 11 11 C 1.53476 * 109.71729 * 64.99912 * 9 7 6 12 12 O 1.43169 * 108.24812 * 179.44367 * 11 9 7 13 13 C 1.36100 * 116.72117 * 313.86061 * 12 11 9 14 14 C 1.38703 * 119.40312 * 197.05659 * 13 12 11 15 15 C 1.38198 * 120.07389 * 180.17099 * 14 13 12 16 16 C 1.38253 * 120.10901 * 359.97438 * 15 14 13 17 17 C 1.38190 * 120.11527 * 359.94627 * 16 15 14 18 18 C 1.38702 * 120.06404 * 0.02562 * 17 16 15 19 19 O 1.36112 * 119.38884 * 180.14902 * 18 17 16 20 20 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 21 21 C 1.54903 * 101.66790 * 35.33394 * 20 4 2 22 22 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 23 23 C 1.36940 * 125.64380 * 298.32682 * 22 2 1 24 24 H 1.07997 * 120.00016 * 359.97438 * 23 22 2 25 25 C 1.38812 * 119.99484 * 179.97438 * 23 22 2 26 26 N 1.31619 * 120.00562 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99752 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47125 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47186 * 120.00143 * 27 25 23 30 30 H 1.48501 * 109.47263 * 240.00001 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 34 34 H 0.97000 * 119.99833 * 25.00630 * 6 4 2 35 35 H 1.09002 * 109.70254 * 299.13556 * 11 9 7 36 36 H 1.08995 * 109.70520 * 59.75223 * 11 9 7 37 37 H 1.08002 * 119.96544 * 0.15975 * 14 13 12 38 38 H 1.07998 * 119.94730 * 179.97438 * 15 14 13 39 39 H 1.08005 * 119.94236 * 179.97438 * 16 15 14 40 40 H 1.08006 * 119.97398 * 179.97438 * 17 16 15 41 41 H 1.08998 * 110.88682 * 277.25916 * 20 4 2 42 42 H 1.09002 * 111.06681 * 153.49006 * 20 4 2 43 43 H 1.09002 * 110.36788 * 204.23581 * 21 20 4 44 44 H 1.09000 * 110.46282 * 81.96139 * 21 20 4 45 45 H 0.97002 * 120.00572 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1832 -3.5796 8 8 2.1293 -1.3117 -3.8786 9 6 2.8707 0.7909 -4.6529 10 1 2.2580 1.6901 -4.5884 11 6 4.3503 1.1588 -4.4772 12 8 4.7115 2.0729 -5.5182 13 6 4.3093 1.7548 -6.7788 14 6 4.9084 2.3794 -7.8628 15 6 4.5082 2.0695 -9.1487 16 6 3.5103 1.1359 -9.3585 17 6 2.9103 0.5088 -8.2832 18 6 3.3077 0.8148 -6.9900 19 8 2.7096 0.1866 -5.9411 20 6 3.2876 -1.5152 -0.6903 21 6 2.8146 -1.8784 0.7393 22 7 2.0301 -0.7124 1.1849 23 6 1.8050 -0.3522 2.4867 24 1 1.2148 0.5243 2.7101 25 6 2.3354 -1.1136 3.5191 26 7 3.0551 -2.1814 3.2468 27 14 2.0290 -0.6218 5.2949 28 1 1.1970 0.6077 5.3316 29 1 1.3188 -1.7206 5.9974 30 1 3.3271 -0.3618 5.9677 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0126 33 1 -0.3634 0.5029 -0.8962 34 1 2.7187 1.1017 -2.0480 35 1 4.4989 1.6304 -3.5058 36 1 4.9633 0.2603 -4.5479 37 1 5.6884 3.1088 -7.7016 38 1 4.9758 2.5573 -9.9912 39 1 3.1993 0.8961 -10.3646 40 1 2.1307 -0.2199 -8.4497 41 1 4.1654 -0.8697 -0.6593 42 1 3.4859 -2.4127 -1.2762 43 1 3.6717 -2.0319 1.3950 44 1 2.1892 -2.7708 0.7185 45 1 3.4254 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089020118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:23 Heat of formation + Delta-G solvation = -45.912144 kcal Electronic energy + Delta-G solvation = -28441.901051 eV Core-core repulsion = 24426.193807 eV Total energy + Delta-G solvation = -4015.707245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.71485 -39.79417 -38.04770 -37.71082 -37.21604 -34.25303 -32.44952 -31.46834 -30.95258 -30.44186 -29.13562 -28.36637 -25.80144 -24.59920 -24.05746 -23.12681 -21.86138 -20.67590 -20.32527 -19.76479 -19.03728 -18.03644 -17.59674 -16.86772 -16.53759 -15.97691 -15.79797 -15.36604 -15.01979 -14.84966 -14.63451 -14.27181 -14.18135 -14.13048 -13.90897 -13.64127 -13.39597 -12.87489 -12.44031 -12.23582 -12.21574 -12.05565 -11.67449 -11.64781 -11.45398 -11.20982 -10.95325 -10.91630 -10.85209 -10.68215 -10.50353 -10.12059 -9.86507 -9.79637 -9.63086 -8.96800 -8.84313 -8.70757 -8.38459 -6.94392 -5.71592 -3.14785 0.98470 0.99517 2.29262 2.39803 2.74494 3.34247 3.35760 3.41153 3.43597 3.45299 3.84534 4.26769 4.38150 4.40503 4.47405 4.67329 4.74450 4.94527 5.04460 5.08570 5.14280 5.17955 5.34724 5.44157 5.51691 5.53208 5.71868 5.82790 5.86803 6.03474 6.11173 6.15307 6.20777 6.25324 6.30367 6.41276 6.48138 6.56842 6.61581 6.77885 6.99359 7.08502 7.41049 7.48355 7.56706 7.78564 8.10010 8.28519 9.14302 9.75132 10.38147 11.31841 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.002283 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.578295 B =12261.698740 C =12475.691161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.135 3.865 5 H 0.097 0.903 6 N -0.708 5.708 7 C 0.523 3.477 8 O -0.510 6.510 9 C 0.035 3.965 10 H 0.111 0.889 11 C 0.034 3.966 12 O -0.301 6.301 13 C 0.046 3.954 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.112 4.112 18 C 0.054 3.946 19 O -0.278 6.278 20 C -0.153 4.153 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.079 0.921 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.400 0.600 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 9.666 -22.121 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.115 0.885 6 N -0.360 5.360 7 C 0.305 3.695 8 O -0.384 6.384 9 C -0.026 4.026 10 H 0.128 0.872 11 C -0.042 4.042 12 O -0.215 6.215 13 C 0.001 3.999 14 C -0.131 4.131 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.130 4.130 18 C 0.009 3.991 19 O -0.191 6.191 20 C -0.193 4.193 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.205 1.205 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.234 0.766 35 H 0.148 0.852 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.034 0.966 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.646 8.738 -22.032 23.849 hybrid contribution -0.172 0.612 1.228 1.383 sum 2.475 9.350 -20.804 22.942 Atomic orbital electron populations 1.22253 0.97782 1.01528 1.00018 1.20986 0.92692 0.94793 0.86796 0.94580 1.22296 0.97970 0.90623 0.86039 0.88499 1.45947 1.68125 1.16629 1.05292 1.19520 0.79059 0.87938 0.82947 1.90768 1.46148 1.19776 1.81731 1.22968 0.98500 0.97167 0.83978 0.87167 1.23595 0.93424 0.95396 0.91789 1.86336 1.74504 1.47192 1.13481 1.18971 0.95892 0.99447 0.85602 1.20455 1.00825 1.01784 0.90066 1.20930 0.98088 0.98651 0.96012 1.20936 0.96980 0.96965 0.98470 1.20493 1.01630 1.02051 0.88849 1.19039 0.94356 0.96921 0.88811 1.86430 1.70556 1.48922 1.13239 1.23462 0.96606 0.99333 0.99904 1.21960 0.97492 0.88448 0.89385 1.44492 1.59239 1.28225 1.00048 1.19060 1.27247 1.08174 0.80416 0.90356 1.24798 1.00314 0.97347 0.98118 1.69793 1.39093 1.17847 1.30120 0.86004 0.77368 0.77566 0.84563 1.20533 1.21746 1.21728 0.92584 0.92857 0.94329 0.76581 0.85162 0.89505 0.84728 0.85037 0.84983 0.84572 0.91874 0.91882 0.87207 0.96630 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.14 37.16 0.34 -2.45 16 2 C 0.16 2.95 3.47 -66.95 -0.23 2.72 16 3 H 0.04 0.66 7.71 -51.93 -0.40 0.26 16 4 C 0.13 2.30 2.86 -65.96 -0.19 2.11 16 5 H 0.10 1.81 7.26 -51.93 -0.38 1.43 16 6 N -0.71 -9.36 5.15 -51.90 -0.27 -9.63 16 7 C 0.52 7.45 7.20 -10.99 -0.08 7.37 16 8 O -0.51 -9.56 16.17 -14.17 -0.23 -9.79 16 9 C 0.03 0.40 3.44 -27.64 -0.10 0.31 16 10 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.03 0.34 6.52 37.40 0.24 0.58 16 12 O -0.30 -3.33 10.42 -32.84 -0.34 -3.67 16 13 C 0.05 0.52 6.49 -39.14 -0.25 0.26 16 14 C -0.11 -1.03 9.96 -39.42 -0.39 -1.42 16 15 C -0.12 -0.89 10.04 -39.59 -0.40 -1.29 16 16 C -0.12 -0.91 10.04 -39.59 -0.40 -1.30 16 17 C -0.11 -1.13 9.96 -39.43 -0.39 -1.52 16 18 C 0.05 0.66 6.49 -39.14 -0.25 0.40 16 19 O -0.28 -3.87 9.62 -47.06 -0.45 -4.32 16 20 C -0.15 -2.87 6.78 -24.45 -0.17 -3.03 16 21 C 0.15 3.57 5.89 -2.53 -0.01 3.56 16 22 N -0.59 -14.25 3.13 -162.57 -0.51 -14.75 16 23 C -0.22 -5.82 9.88 -15.06 -0.15 -5.97 16 24 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.06 10.09 55.49 0.56 -25.50 16 27 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.06 1.03 8.03 -51.93 -0.42 0.62 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 4.08 8.22 -40.82 -0.34 3.74 16 35 H 0.13 0.93 7.99 -51.93 -0.42 0.51 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.53 369.55 -9.67 -42.19 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.45 Total: 3.52 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.53 Total: -0.06 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.22 Total: -49.88 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.02 Total: -17.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.53 -9.67 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.720 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds