Wall clock time and date at job start Tue Mar 31 2020 17:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 6 6 N 1.46495 * 110.72204 * 100.02119 * 4 2 1 7 7 C 1.34775 * 120.00176 * 205.00286 * 6 4 2 8 8 O 1.21287 * 119.99927 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99962 * 180.02562 * 7 6 4 10 10 H 1.09002 * 109.70614 * 304.39948 * 9 7 6 11 11 C 1.53476 * 109.71729 * 64.99912 * 9 7 6 12 12 O 1.43169 * 108.24812 * 179.44367 * 11 9 7 13 13 C 1.36100 * 116.72117 * 313.86061 * 12 11 9 14 14 C 1.38703 * 119.40312 * 197.05659 * 13 12 11 15 15 C 1.38198 * 120.07389 * 180.17099 * 14 13 12 16 16 C 1.38253 * 120.10901 * 359.97438 * 15 14 13 17 17 C 1.38190 * 120.11527 * 359.94627 * 16 15 14 18 18 C 1.38702 * 120.06404 * 0.02562 * 17 16 15 19 19 O 1.36112 * 119.38884 * 180.14902 * 18 17 16 20 20 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 21 21 C 1.54903 * 101.66790 * 35.33394 * 20 4 2 22 22 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 23 23 C 1.36940 * 125.64380 * 298.32682 * 22 2 1 24 24 H 1.07997 * 120.00016 * 359.97438 * 23 22 2 25 25 C 1.38812 * 119.99484 * 179.97438 * 23 22 2 26 26 N 1.31619 * 120.00562 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99752 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47125 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47186 * 120.00143 * 27 25 23 30 30 H 1.48501 * 109.47263 * 240.00001 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 34 34 H 0.97000 * 119.99833 * 25.00630 * 6 4 2 35 35 H 1.09002 * 109.70254 * 299.13556 * 11 9 7 36 36 H 1.08995 * 109.70520 * 59.75223 * 11 9 7 37 37 H 1.08002 * 119.96544 * 0.15975 * 14 13 12 38 38 H 1.07998 * 119.94730 * 179.97438 * 15 14 13 39 39 H 1.08005 * 119.94236 * 179.97438 * 16 15 14 40 40 H 1.08006 * 119.97398 * 179.97438 * 17 16 15 41 41 H 1.08998 * 110.88682 * 277.25916 * 20 4 2 42 42 H 1.09002 * 111.06681 * 153.49006 * 20 4 2 43 43 H 1.09002 * 110.36788 * 204.23581 * 21 20 4 44 44 H 1.09000 * 110.46282 * 81.96139 * 21 20 4 45 45 H 0.97002 * 120.00572 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1832 -3.5796 8 8 2.1293 -1.3117 -3.8786 9 6 2.8707 0.7909 -4.6529 10 1 2.2580 1.6901 -4.5884 11 6 4.3503 1.1588 -4.4772 12 8 4.7115 2.0729 -5.5182 13 6 4.3093 1.7548 -6.7788 14 6 4.9084 2.3794 -7.8628 15 6 4.5082 2.0695 -9.1487 16 6 3.5103 1.1359 -9.3585 17 6 2.9103 0.5088 -8.2832 18 6 3.3077 0.8148 -6.9900 19 8 2.7096 0.1866 -5.9411 20 6 3.2876 -1.5152 -0.6903 21 6 2.8146 -1.8784 0.7393 22 7 2.0301 -0.7124 1.1849 23 6 1.8050 -0.3522 2.4867 24 1 1.2148 0.5243 2.7101 25 6 2.3354 -1.1136 3.5191 26 7 3.0551 -2.1814 3.2468 27 14 2.0290 -0.6218 5.2949 28 1 1.1970 0.6077 5.3316 29 1 1.3188 -1.7206 5.9974 30 1 3.3271 -0.3618 5.9677 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0126 33 1 -0.3634 0.5029 -0.8962 34 1 2.7187 1.1017 -2.0480 35 1 4.4989 1.6304 -3.5058 36 1 4.9633 0.2603 -4.5479 37 1 5.6884 3.1088 -7.7016 38 1 4.9758 2.5573 -9.9912 39 1 3.1993 0.8961 -10.3646 40 1 2.1307 -0.2199 -8.4497 41 1 4.1654 -0.8697 -0.6593 42 1 3.4859 -2.4127 -1.2762 43 1 3.6717 -2.0319 1.3950 44 1 2.1892 -2.7708 0.7185 45 1 3.4254 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089020118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:21 Heat of formation + Delta-G solvation = -66.256932 kcal Electronic energy + Delta-G solvation = -28442.783267 eV Core-core repulsion = 24426.193807 eV Total energy + Delta-G solvation = -4016.589461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.55057 -41.00153 -39.33962 -38.53520 -38.24485 -35.74359 -34.07291 -32.55839 -32.03531 -31.63875 -30.51613 -29.51598 -26.90827 -26.05586 -25.72209 -23.84689 -22.86134 -22.06968 -21.67380 -21.20978 -19.87770 -19.00715 -18.70354 -18.46267 -17.55916 -17.23674 -16.70925 -16.63249 -16.20430 -15.82514 -15.76254 -15.63038 -15.34161 -15.22068 -14.95180 -14.86321 -14.40379 -14.34132 -14.02341 -13.72875 -13.25829 -13.15012 -12.95253 -12.85508 -12.76274 -12.63752 -12.41578 -12.26401 -12.20190 -12.15120 -11.95251 -11.67323 -11.58672 -11.46462 -11.00958 -10.74108 -10.18043 -9.66571 -9.13608 -8.90114 -7.75044 -5.19862 0.29086 0.29602 1.24069 1.34121 1.48916 1.49628 1.59313 1.97904 2.40345 2.52971 2.73564 3.02170 3.34041 3.37315 3.53061 3.61072 3.63329 3.81929 3.90522 4.03242 4.13476 4.18911 4.26764 4.34283 4.43225 4.49397 4.54085 4.60675 4.63435 4.78877 4.84387 4.90101 5.01344 5.08874 5.16278 5.21409 5.31515 5.50472 5.51725 5.54573 5.60122 5.69285 5.79772 5.80546 6.28671 6.30798 6.36838 6.99738 7.11370 7.78983 8.41805 9.26997 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.002283 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.578295 B =12261.698740 C =12475.691161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.152 3.848 5 H 0.081 0.919 6 N -0.690 5.690 7 C 0.529 3.471 8 O -0.559 6.559 9 C 0.040 3.960 10 H 0.135 0.865 11 C 0.037 3.963 12 O -0.305 6.305 13 C 0.025 3.975 14 C -0.119 4.119 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.025 3.975 19 O -0.309 6.309 20 C -0.139 4.139 21 C 0.156 3.844 22 N -0.613 5.613 23 C -0.223 4.223 24 H 0.087 0.913 25 C -0.070 4.070 26 N -0.951 5.951 27 Si 0.977 3.023 28 H -0.264 1.264 29 H -0.299 1.299 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.419 0.581 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.079 0.921 44 H -0.017 1.017 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 12.570 -24.132 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 H 0.077 0.923 4 C 0.047 3.953 5 H 0.099 0.901 6 N -0.344 5.344 7 C 0.314 3.686 8 O -0.436 6.436 9 C -0.020 4.020 10 H 0.153 0.847 11 C -0.039 4.039 12 O -0.220 6.220 13 C -0.019 4.019 14 C -0.137 4.137 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.146 4.146 18 C -0.019 4.019 19 O -0.223 6.223 20 C -0.178 4.178 21 C 0.030 3.970 22 N -0.338 5.338 23 C -0.352 4.352 24 H 0.105 0.895 25 C -0.262 4.262 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.188 1.188 29 H -0.226 1.226 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.179 0.821 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.154 0.846 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.001 0.999 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.928 11.715 -24.071 26.930 hybrid contribution -0.272 -0.276 1.707 1.751 sum 2.656 11.439 -22.364 25.260 Atomic orbital electron populations 1.22153 0.96686 1.00699 1.01293 1.21200 0.93428 0.95349 0.85574 0.92317 1.21828 0.96553 0.90698 0.86243 0.90063 1.45634 1.67576 1.16854 1.04300 1.19963 0.77681 0.87628 0.83372 1.90754 1.48306 1.22067 1.82478 1.22973 1.00031 0.96474 0.82498 0.84744 1.23699 0.91883 0.95424 0.92923 1.86324 1.74607 1.47371 1.13660 1.19258 0.96408 1.00059 0.86208 1.20819 1.00966 1.01754 0.90156 1.21378 0.97227 0.97764 0.96436 1.21329 0.96271 0.96042 0.99116 1.20762 1.02222 1.02625 0.89007 1.19345 0.95545 0.98133 0.88909 1.86361 1.71435 1.50258 1.14254 1.23258 0.97714 1.00034 0.96809 1.21678 0.95800 0.87787 0.91693 1.44722 1.59705 1.28561 1.00852 1.19420 1.26163 1.07929 0.81660 0.89550 1.25597 1.00969 0.97785 1.01860 1.70038 1.40488 1.19013 1.30571 0.85024 0.76989 0.77385 0.80024 1.18838 1.22619 1.22012 0.93260 0.94723 0.91068 0.74252 0.82114 0.90591 0.83090 0.81662 0.82035 0.84560 0.90387 0.91672 0.90326 0.99865 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.14 71.98 0.66 -4.44 16 2 C 0.15 5.52 3.47 45.34 0.16 5.68 16 3 H 0.06 1.93 7.71 -2.38 -0.02 1.91 16 4 C 0.15 5.05 2.86 46.27 0.13 5.18 16 5 H 0.08 3.03 7.26 -2.38 -0.02 3.01 16 6 N -0.69 -16.79 5.15 -436.50 -2.25 -19.04 16 7 C 0.53 14.48 7.20 87.66 0.63 15.11 16 8 O -0.56 -21.06 16.17 15.80 0.26 -20.81 16 9 C 0.04 0.88 3.44 30.01 0.10 0.98 16 10 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 11 C 0.04 0.66 6.52 72.14 0.47 1.13 16 12 O -0.31 -6.23 10.42 -82.47 -0.86 -7.09 16 13 C 0.03 0.54 6.49 22.56 0.15 0.68 16 14 C -0.12 -1.87 9.96 22.37 0.22 -1.65 16 15 C -0.11 -1.29 10.04 22.26 0.22 -1.07 16 16 C -0.11 -1.44 10.04 22.26 0.22 -1.21 16 17 C -0.13 -2.47 9.96 22.37 0.22 -2.25 16 18 C 0.03 0.60 6.49 22.56 0.15 0.75 16 19 O -0.31 -8.57 9.62 -69.03 -0.66 -9.23 16 20 C -0.14 -5.17 6.78 32.07 0.22 -4.95 16 21 C 0.16 7.57 5.89 86.85 0.51 8.08 16 22 N -0.61 -29.47 3.13 -668.26 -2.09 -31.56 16 23 C -0.22 -11.75 9.88 84.03 0.83 -10.92 16 24 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 25 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 26 N -0.95 -55.71 10.09 21.65 0.22 -55.49 16 27 Si 0.98 44.57 29.55 68.60 2.03 46.60 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 31 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.42 7.10 8.22 -92.71 -0.76 6.34 16 35 H 0.16 1.78 7.99 -2.39 -0.02 1.76 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 43 H 0.08 4.34 5.87 -2.39 -0.01 4.33 16 44 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -73.72 369.55 2.25 -71.48 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.25 Total: 17.42 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.36 Total: 7.73 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.12 Total: -106.09 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.27 Total: -37.13 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.72 2.25 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.218 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds