Wall clock time and date at job start Tue Mar 31 2020 17:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.60073 * 4 2 1 6 6 N 1.46500 * 110.87331 * 99.80219 * 4 2 1 7 7 C 1.34782 * 120.00004 * 200.06199 * 6 4 2 8 8 O 1.21278 * 119.99819 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99705 * 179.97438 * 7 6 4 10 10 H 1.09001 * 109.70300 * 55.00724 * 9 7 6 11 11 C 1.53468 * 109.71462 * 294.41615 * 9 7 6 12 12 O 1.43165 * 108.25401 * 180.63737 * 11 9 7 13 13 C 1.36110 * 116.73783 * 46.12591 * 12 11 9 14 14 C 1.38708 * 119.39244 * 162.98362 * 13 12 11 15 15 C 1.38191 * 120.06444 * 179.66817 * 14 13 12 16 16 C 1.38256 * 120.11637 * 359.97438 * 15 14 13 17 17 C 1.38191 * 120.11120 * 0.07939 * 16 15 14 18 18 C 1.38705 * 120.06699 * 359.96911 * 17 16 15 19 19 O 1.36106 * 119.39851 * 179.86949 * 18 17 16 20 20 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 21 21 C 1.54906 * 101.61451 * 35.48113 * 20 4 2 22 22 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 23 23 C 1.36936 * 125.65385 * 298.49146 * 22 2 1 24 24 H 1.08001 * 119.99967 * 359.97438 * 23 22 2 25 25 C 1.38816 * 120.00461 * 180.02562 * 23 22 2 26 26 N 1.31616 * 119.99418 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00126 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47094 * 89.99760 * 27 25 23 29 29 H 1.48495 * 109.46793 * 209.99676 * 27 25 23 30 30 H 1.48497 * 109.46828 * 329.99405 * 27 25 23 31 31 H 1.09000 * 109.47479 * 181.01617 * 1 2 3 32 32 H 1.09003 * 109.47170 * 301.01498 * 1 2 3 33 33 H 1.09002 * 109.47458 * 61.01333 * 1 2 3 34 34 H 0.96996 * 120.00433 * 20.06003 * 6 4 2 35 35 H 1.08995 * 109.70702 * 300.26918 * 11 9 7 36 36 H 1.09002 * 109.70652 * 60.89288 * 11 9 7 37 37 H 1.08002 * 119.96278 * 359.65503 * 14 13 12 38 38 H 1.08004 * 119.94371 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.94346 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.96788 * 179.97438 * 17 16 15 41 41 H 1.09002 * 111.00677 * 153.57697 * 20 4 2 42 42 H 1.09002 * 111.00564 * 277.38955 * 20 4 2 43 43 H 1.09008 * 110.36753 * 81.85112 * 21 20 4 44 44 H 1.09001 * 110.37094 * 204.16995 * 21 20 4 45 45 H 0.97005 * 119.99622 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3061 -1.4456 -1.6186 6 7 2.4515 0.1962 -2.2915 7 6 2.5488 -0.2183 -3.5703 8 8 2.3075 -1.3726 -3.8536 9 6 2.9563 0.7529 -4.6482 10 1 3.9055 1.2187 -4.3834 11 6 1.8768 1.8321 -4.8077 12 8 2.2875 2.7270 -5.8470 13 6 2.7559 2.1610 -6.9928 14 6 2.8332 2.9256 -8.1475 15 6 3.3130 2.3671 -9.3169 16 6 3.7178 1.0453 -9.3392 17 6 3.6424 0.2777 -8.1926 18 6 3.1608 0.8318 -7.0157 19 8 3.0900 0.0627 -5.8951 20 6 3.2900 -1.5101 -0.6954 21 6 2.8206 -1.8769 0.7345 22 7 2.0331 -0.7135 1.1829 23 6 1.8075 -0.3572 2.4857 24 1 1.2144 0.5167 2.7117 25 6 2.3419 -1.1186 3.5161 26 7 3.0650 -2.1833 3.2407 27 14 2.0347 -0.6322 5.2933 28 1 0.7971 -1.2927 5.7804 29 1 3.1854 -1.0589 6.1292 30 1 1.8774 0.8417 5.3829 31 1 -0.3634 -1.0275 0.0182 32 1 -0.3634 0.5295 0.8808 33 1 -0.3634 0.4980 -0.8989 34 1 2.6441 1.1195 -2.0650 35 1 0.9290 1.3667 -5.0780 36 1 1.7643 2.3805 -3.8725 37 1 2.5178 3.9585 -8.1327 38 1 3.3720 2.9641 -10.2150 39 1 4.0928 0.6117 -10.2545 40 1 3.9589 -0.7547 -8.2127 41 1 3.4887 -2.4061 -1.2833 42 1 4.1666 -0.8630 -0.6649 43 1 2.1969 -2.7706 0.7115 44 1 3.6793 -2.0294 1.3883 45 1 3.4382 -2.7156 3.9607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089020119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:27 Heat of formation + Delta-G solvation = -45.634160 kcal Electronic energy + Delta-G solvation = -28430.966179 eV Core-core repulsion = 24415.270989 eV Total energy + Delta-G solvation = -4015.695190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72038 -39.79620 -38.05398 -37.71613 -37.21643 -34.24769 -32.45046 -31.47768 -30.95702 -30.44324 -29.13750 -28.36679 -25.80989 -24.59870 -24.05932 -23.13094 -21.88276 -20.64347 -20.29265 -19.80620 -19.04583 -18.01985 -17.59831 -16.85178 -16.54742 -15.99867 -15.76415 -15.38509 -15.02817 -14.84557 -14.68309 -14.31854 -14.15106 -14.03626 -13.99506 -13.57368 -13.43674 -12.88302 -12.44170 -12.25074 -12.20598 -12.08527 -11.68076 -11.64330 -11.46659 -11.21087 -10.94144 -10.90364 -10.86026 -10.63472 -10.49463 -10.14099 -9.88023 -9.79113 -9.61976 -8.97150 -8.84572 -8.70175 -8.38901 -6.94333 -5.71023 -3.14388 0.98104 0.99224 2.28335 2.41736 2.73165 3.33776 3.36210 3.41000 3.43115 3.45207 3.84091 4.26312 4.38041 4.40589 4.47554 4.66753 4.73313 4.94027 5.03120 5.08175 5.13116 5.16783 5.34961 5.44645 5.51366 5.54460 5.71439 5.82510 5.86434 6.02683 6.12644 6.15068 6.19942 6.24218 6.30035 6.42809 6.48172 6.56357 6.63931 6.76992 6.98912 7.08174 7.41446 7.49070 7.56522 7.79406 8.10693 8.29025 9.14516 9.75417 10.38489 11.32305 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032955 B = 0.002285 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.427808 B =12251.694067 C =12684.521641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.708 5.708 7 C 0.523 3.477 8 O -0.510 6.510 9 C 0.034 3.966 10 H 0.111 0.889 11 C 0.034 3.966 12 O -0.301 6.301 13 C 0.045 3.955 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.055 3.945 19 O -0.278 6.278 20 C -0.154 4.154 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.222 4.222 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.915 3.085 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.110 0.890 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 10.239 -22.405 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.361 5.361 7 C 0.305 3.695 8 O -0.383 6.383 9 C -0.026 4.026 10 H 0.128 0.872 11 C -0.042 4.042 12 O -0.215 6.215 13 C 0.000 4.000 14 C -0.131 4.131 15 C -0.137 4.137 16 C -0.133 4.133 17 C -0.130 4.130 18 C 0.009 3.991 19 O -0.191 6.191 20 C -0.193 4.193 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.350 4.350 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.128 0.872 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.469 9.291 -22.303 24.165 hybrid contribution -0.154 0.608 1.226 1.377 sum 0.316 9.899 -21.077 23.288 Atomic orbital electron populations 1.22258 0.97767 1.01569 0.99998 1.20964 0.92636 0.94791 0.86785 0.94579 1.22241 0.97928 0.90645 0.85963 0.88775 1.45964 1.69423 1.14375 1.06306 1.19507 0.78716 0.88352 0.82894 1.90766 1.47612 1.18194 1.81775 1.22963 1.01360 0.93505 0.84807 0.87155 1.23583 0.96687 0.91706 0.92192 1.86332 1.78930 1.33684 1.22597 1.18969 1.00897 0.92136 0.87959 1.20451 1.02518 1.00462 0.89692 1.20930 0.99944 0.95435 0.97391 1.20939 1.00716 0.94002 0.97661 1.20499 1.00865 1.01320 0.90326 1.19038 1.01572 0.90161 0.88311 1.86418 1.88850 1.32241 1.11611 1.23418 0.96588 0.99463 0.99866 1.21977 0.97454 0.88427 0.89393 1.44493 1.58999 1.28462 1.00033 1.19009 1.27176 1.08426 0.80414 0.90414 1.24803 1.00237 0.97386 0.98127 1.69791 1.38764 1.17980 1.30284 0.86072 0.77276 0.77728 0.84392 1.21609 1.21646 1.20699 0.92837 0.92571 0.94320 0.76620 0.89598 0.85187 0.84738 0.85038 0.84971 0.84547 0.91811 0.91875 0.96642 0.87213 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.14 37.16 0.34 -2.39 16 2 C 0.16 2.95 3.47 -66.96 -0.23 2.71 16 3 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 4 C 0.14 2.33 2.75 -66.10 -0.18 2.15 16 5 H 0.09 1.74 7.40 -51.93 -0.38 1.36 16 6 N -0.71 -9.39 5.18 -52.03 -0.27 -9.66 16 7 C 0.52 7.47 7.19 -10.98 -0.08 7.39 16 8 O -0.51 -9.57 16.25 -14.14 -0.23 -9.80 16 9 C 0.03 0.40 3.43 -27.64 -0.09 0.30 16 10 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.03 0.33 6.53 37.40 0.24 0.57 16 12 O -0.30 -3.27 10.42 -32.88 -0.34 -3.61 16 13 C 0.05 0.51 6.49 -39.14 -0.25 0.25 16 14 C -0.11 -1.01 9.96 -39.43 -0.39 -1.41 16 15 C -0.12 -0.89 10.04 -39.59 -0.40 -1.29 16 16 C -0.11 -0.90 10.04 -39.59 -0.40 -1.30 16 17 C -0.11 -1.13 9.96 -39.43 -0.39 -1.53 16 18 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 19 O -0.28 -3.88 9.62 -47.04 -0.45 -4.33 16 20 C -0.15 -2.95 6.76 -24.58 -0.17 -3.11 16 21 C 0.15 3.61 5.89 -2.50 -0.01 3.60 16 22 N -0.59 -14.28 3.13 -162.54 -0.51 -14.79 16 23 C -0.22 -5.87 9.89 -15.06 -0.15 -6.01 16 24 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 27 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 4.07 8.22 -40.82 -0.34 3.74 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.13 0.86 8.04 -51.93 -0.42 0.44 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.11 2.93 5.88 -51.93 -0.31 2.62 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -32.64 369.76 -9.67 -42.31 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.46 Total: 3.45 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.52 Total: -0.01 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.22 Total: -50.05 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.02 Total: -17.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.64 -9.67 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.322 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds