Wall clock time and date at job start Tue Mar 31 2020 17:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.60073 * 4 2 1 6 6 N 1.46500 * 110.87331 * 99.80219 * 4 2 1 7 7 C 1.34782 * 120.00004 * 200.06199 * 6 4 2 8 8 O 1.21278 * 119.99819 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99705 * 179.97438 * 7 6 4 10 10 H 1.09001 * 109.70300 * 55.00724 * 9 7 6 11 11 C 1.53468 * 109.71462 * 294.41615 * 9 7 6 12 12 O 1.43165 * 108.25401 * 180.63737 * 11 9 7 13 13 C 1.36110 * 116.73783 * 46.12591 * 12 11 9 14 14 C 1.38708 * 119.39244 * 162.98362 * 13 12 11 15 15 C 1.38191 * 120.06444 * 179.66817 * 14 13 12 16 16 C 1.38256 * 120.11637 * 359.97438 * 15 14 13 17 17 C 1.38191 * 120.11120 * 0.07939 * 16 15 14 18 18 C 1.38705 * 120.06699 * 359.96911 * 17 16 15 19 19 O 1.36106 * 119.39851 * 179.86949 * 18 17 16 20 20 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 21 21 C 1.54906 * 101.61451 * 35.48113 * 20 4 2 22 22 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 23 23 C 1.36936 * 125.65385 * 298.49146 * 22 2 1 24 24 H 1.08001 * 119.99967 * 359.97438 * 23 22 2 25 25 C 1.38816 * 120.00461 * 180.02562 * 23 22 2 26 26 N 1.31616 * 119.99418 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00126 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47094 * 89.99760 * 27 25 23 29 29 H 1.48495 * 109.46793 * 209.99676 * 27 25 23 30 30 H 1.48497 * 109.46828 * 329.99405 * 27 25 23 31 31 H 1.09000 * 109.47479 * 181.01617 * 1 2 3 32 32 H 1.09003 * 109.47170 * 301.01498 * 1 2 3 33 33 H 1.09002 * 109.47458 * 61.01333 * 1 2 3 34 34 H 0.96996 * 120.00433 * 20.06003 * 6 4 2 35 35 H 1.08995 * 109.70702 * 300.26918 * 11 9 7 36 36 H 1.09002 * 109.70652 * 60.89288 * 11 9 7 37 37 H 1.08002 * 119.96278 * 359.65503 * 14 13 12 38 38 H 1.08004 * 119.94371 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.94346 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.96788 * 179.97438 * 17 16 15 41 41 H 1.09002 * 111.00677 * 153.57697 * 20 4 2 42 42 H 1.09002 * 111.00564 * 277.38955 * 20 4 2 43 43 H 1.09008 * 110.36753 * 81.85112 * 21 20 4 44 44 H 1.09001 * 110.37094 * 204.16995 * 21 20 4 45 45 H 0.97005 * 119.99622 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3061 -1.4456 -1.6186 6 7 2.4515 0.1962 -2.2915 7 6 2.5488 -0.2183 -3.5703 8 8 2.3075 -1.3726 -3.8536 9 6 2.9563 0.7529 -4.6482 10 1 3.9055 1.2187 -4.3834 11 6 1.8768 1.8321 -4.8077 12 8 2.2875 2.7270 -5.8470 13 6 2.7559 2.1610 -6.9928 14 6 2.8332 2.9256 -8.1475 15 6 3.3130 2.3671 -9.3169 16 6 3.7178 1.0453 -9.3392 17 6 3.6424 0.2777 -8.1926 18 6 3.1608 0.8318 -7.0157 19 8 3.0900 0.0627 -5.8951 20 6 3.2900 -1.5101 -0.6954 21 6 2.8206 -1.8769 0.7345 22 7 2.0331 -0.7135 1.1829 23 6 1.8075 -0.3572 2.4857 24 1 1.2144 0.5167 2.7117 25 6 2.3419 -1.1186 3.5161 26 7 3.0650 -2.1833 3.2407 27 14 2.0347 -0.6322 5.2933 28 1 0.7971 -1.2927 5.7804 29 1 3.1854 -1.0589 6.1292 30 1 1.8774 0.8417 5.3829 31 1 -0.3634 -1.0275 0.0182 32 1 -0.3634 0.5295 0.8808 33 1 -0.3634 0.4980 -0.8989 34 1 2.6441 1.1195 -2.0650 35 1 0.9290 1.3667 -5.0780 36 1 1.7643 2.3805 -3.8725 37 1 2.5178 3.9585 -8.1327 38 1 3.3720 2.9641 -10.2150 39 1 4.0928 0.6117 -10.2545 40 1 3.9589 -0.7547 -8.2127 41 1 3.4887 -2.4061 -1.2833 42 1 4.1666 -0.8630 -0.6649 43 1 2.1969 -2.7706 0.7115 44 1 3.6793 -2.0294 1.3883 45 1 3.4382 -2.7156 3.9607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089020119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:26 Heat of formation + Delta-G solvation = -66.171902 kcal Electronic energy + Delta-G solvation = -28431.856763 eV Core-core repulsion = 24415.270989 eV Total energy + Delta-G solvation = -4016.585774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54939 -41.00759 -39.34298 -38.53118 -38.24617 -35.74315 -34.07227 -32.56799 -32.03143 -31.63930 -30.51730 -29.51376 -26.89550 -26.06848 -25.71434 -23.84753 -22.90092 -22.00987 -21.67444 -21.23111 -19.88321 -19.01858 -18.67158 -18.43852 -17.58548 -17.23844 -16.71719 -16.59838 -16.20880 -15.91650 -15.66090 -15.63041 -15.44531 -15.21440 -14.88731 -14.82621 -14.44840 -14.33198 -14.01558 -13.76049 -13.24887 -13.14724 -12.93564 -12.85344 -12.76814 -12.61057 -12.41222 -12.26278 -12.19303 -12.12534 -11.97813 -11.68580 -11.57840 -11.47342 -11.00374 -10.73371 -10.19169 -9.66559 -9.13518 -8.90397 -7.74882 -5.19838 0.29062 0.29678 1.23350 1.35601 1.49272 1.50218 1.58713 1.98231 2.40523 2.52990 2.73548 3.02888 3.34141 3.37474 3.52978 3.60542 3.63776 3.81305 3.91908 4.04683 4.13659 4.17781 4.26898 4.34510 4.43241 4.49204 4.54244 4.60853 4.62760 4.79518 4.84671 4.91141 5.02031 5.09024 5.16258 5.21452 5.33072 5.49850 5.51740 5.55388 5.59496 5.69352 5.79798 5.80221 6.28882 6.30240 6.37116 7.00115 7.10874 7.78884 8.41925 9.27133 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032955 B = 0.002285 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.427808 B =12251.694067 C =12684.521641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.154 3.846 5 H 0.081 0.919 6 N -0.691 5.691 7 C 0.529 3.471 8 O -0.558 6.558 9 C 0.039 3.961 10 H 0.131 0.869 11 C 0.038 3.962 12 O -0.305 6.305 13 C 0.026 3.974 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.025 3.975 19 O -0.309 6.309 20 C -0.140 4.140 21 C 0.157 3.843 22 N -0.614 5.614 23 C -0.224 4.224 24 H 0.088 0.912 25 C -0.071 4.071 26 N -0.952 5.952 27 Si 0.978 3.022 28 H -0.291 1.291 29 H -0.298 1.298 30 H -0.265 1.265 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.419 0.581 35 H 0.079 0.921 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.063 0.937 42 H 0.072 0.928 43 H -0.016 1.016 44 H 0.078 0.922 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 13.397 -24.429 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 H 0.077 0.923 4 C 0.049 3.951 5 H 0.100 0.900 6 N -0.344 5.344 7 C 0.313 3.687 8 O -0.436 6.436 9 C -0.021 4.021 10 H 0.148 0.852 11 C -0.038 4.038 12 O -0.219 6.219 13 C -0.019 4.019 14 C -0.136 4.136 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.147 4.147 18 C -0.020 4.020 19 O -0.224 6.224 20 C -0.180 4.180 21 C 0.031 3.969 22 N -0.339 5.339 23 C -0.353 4.353 24 H 0.106 0.894 25 C -0.263 4.263 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.219 1.219 29 H -0.225 1.225 30 H -0.190 1.190 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.257 0.743 35 H 0.097 0.903 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.153 0.847 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.002 0.998 44 H 0.096 0.904 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.149 12.526 -24.357 27.390 hybrid contribution -0.058 -0.360 1.708 1.746 sum 0.092 12.166 -22.649 25.710 Atomic orbital electron populations 1.22154 0.96329 1.00767 1.01544 1.21188 0.93603 0.95285 0.85357 0.92255 1.21784 0.96310 0.90763 0.86286 0.90047 1.45649 1.68834 1.14680 1.05268 1.19957 0.77295 0.88075 0.83338 1.90751 1.49737 1.20517 1.82550 1.22967 1.02989 0.92751 0.83403 0.85168 1.23716 0.95366 0.91394 0.93328 1.86320 1.79055 1.33820 1.22754 1.19249 1.01708 0.92115 0.88785 1.20821 1.02158 1.01208 0.89448 1.21379 0.97962 0.95434 0.98036 1.21325 0.99561 0.94122 0.97773 1.20761 1.01347 1.01800 0.90798 1.19346 1.03526 0.90845 0.88247 1.86348 1.89532 1.33827 1.12674 1.23213 0.97771 1.00023 0.96998 1.21677 0.95783 0.87893 0.91514 1.44728 1.59483 1.28769 1.00920 1.19396 1.26044 1.08199 0.81623 0.89423 1.25621 1.00902 0.97834 1.01960 1.70044 1.40236 1.19197 1.30707 0.85079 0.76393 0.78092 0.79783 1.21858 1.22467 1.18997 0.94769 0.93213 0.90591 0.74265 0.90306 0.81849 0.82989 0.81645 0.82088 0.84677 0.91878 0.90892 0.99769 0.90440 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.14 71.98 0.66 -4.25 16 2 C 0.15 5.50 3.47 45.34 0.16 5.66 16 3 H 0.06 1.92 7.70 -2.39 -0.02 1.91 16 4 C 0.15 5.12 2.75 46.18 0.13 5.25 16 5 H 0.08 2.99 7.40 -2.38 -0.02 2.97 16 6 N -0.69 -16.84 5.18 -436.92 -2.26 -19.11 16 7 C 0.53 14.55 7.19 87.66 0.63 15.18 16 8 O -0.56 -21.14 16.25 15.81 0.26 -20.88 16 9 C 0.04 0.86 3.43 30.01 0.10 0.96 16 10 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 11 C 0.04 0.64 6.53 72.14 0.47 1.11 16 12 O -0.31 -6.02 10.42 -82.58 -0.86 -6.88 16 13 C 0.03 0.55 6.49 22.56 0.15 0.69 16 14 C -0.12 -1.82 9.96 22.37 0.22 -1.60 16 15 C -0.11 -1.28 10.04 22.26 0.22 -1.06 16 16 C -0.11 -1.45 10.04 22.26 0.22 -1.23 16 17 C -0.13 -2.52 9.96 22.37 0.22 -2.30 16 18 C 0.02 0.59 6.49 22.56 0.15 0.74 16 19 O -0.31 -8.66 9.62 -68.98 -0.66 -9.32 16 20 C -0.14 -5.42 6.76 31.98 0.22 -5.20 16 21 C 0.16 7.72 5.89 86.85 0.51 8.23 16 22 N -0.61 -29.59 3.13 -668.16 -2.09 -31.68 16 23 C -0.22 -11.80 9.89 84.03 0.83 -10.97 16 24 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 25 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 26 N -0.95 -56.11 10.09 21.65 0.22 -55.89 16 27 Si 0.98 44.61 29.55 68.60 2.03 46.64 16 28 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.42 7.07 8.22 -92.71 -0.76 6.31 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.16 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 44 H 0.08 4.34 5.88 -2.39 -0.01 4.33 16 45 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -74.31 369.76 2.23 -72.09 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.25 Total: 17.28 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.36 Total: 7.75 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.14 Total: -106.68 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.27 Total: -37.08 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -74.31 2.23 -72.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.916 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds