Wall clock time and date at job start Tue Mar 31 2020 17:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87320 * 2 1 4 4 C 1.54327 * 109.87910 * 238.98841 * 2 1 3 5 5 H 1.08993 * 110.72079 * 336.74816 * 4 2 1 6 6 N 1.46496 * 110.72108 * 100.02748 * 4 2 1 7 7 C 1.34779 * 119.99984 * 204.99946 * 6 4 2 8 8 O 1.21592 * 119.99830 * 359.97438 * 7 6 4 9 9 C 1.47613 * 120.00380 * 179.97438 * 7 6 4 10 10 C 1.39702 * 120.09569 * 359.72520 * 9 7 6 11 11 C 1.37720 * 119.96596 * 179.76939 * 10 9 7 12 12 C 1.39002 * 120.26879 * 0.56697 * 11 10 9 13 13 C 1.39261 * 120.04816 * 359.62219 * 12 11 10 14 14 C 1.38298 * 119.95821 * 0.12103 * 13 12 11 15 15 O 1.36146 * 120.76710 * 180.25767 * 13 12 11 16 16 C 1.43170 * 116.71041 * 342.86535 * 15 13 12 17 17 C 1.53470 * 108.23354 * 46.13799 * 16 15 13 18 18 O 1.35964 * 119.24158 * 179.53218 * 12 11 10 19 19 C 1.55165 * 102.94078 * 218.38660 * 4 2 1 20 20 C 1.54915 * 101.57980 * 35.50135 * 19 4 2 21 21 N 1.47022 * 109.88459 * 121.17816 * 2 1 3 22 22 C 1.36938 * 125.64666 * 298.32131 * 21 2 1 23 23 H 1.07995 * 119.99826 * 0.02562 * 22 21 2 24 24 C 1.38807 * 119.99658 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00580 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99640 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46988 * 90.00292 * 26 24 22 28 28 H 1.48502 * 109.46777 * 209.99947 * 26 24 22 29 29 H 1.48489 * 109.47442 * 329.99862 * 26 24 22 30 30 H 1.09007 * 109.47032 * 181.01536 * 1 2 3 31 31 H 1.09000 * 109.46814 * 301.01208 * 1 2 3 32 32 H 1.08998 * 109.47411 * 61.01224 * 1 2 3 33 33 H 0.96998 * 120.00196 * 24.99147 * 6 4 2 34 34 H 1.08004 * 120.01665 * 0.02723 * 10 9 7 35 35 H 1.08002 * 119.86380 * 180.30287 * 11 10 9 36 36 H 1.07996 * 120.02110 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.71368 * 165.81961 * 16 15 13 38 38 H 1.09002 * 109.71325 * 286.45654 * 16 15 13 39 39 H 1.08993 * 109.71048 * 59.87037 * 17 16 15 40 40 H 1.09000 * 109.71010 * 180.46078 * 17 16 15 41 41 H 1.08995 * 111.00547 * 153.57467 * 19 4 2 42 42 H 1.09001 * 111.00003 * 277.43047 * 19 4 2 43 43 H 1.08997 * 110.36462 * 204.15099 * 20 19 4 44 44 H 1.08999 * 110.46102 * 81.87572 * 20 19 4 45 45 H 0.96996 * 120.00418 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 1 1.3051 -1.4436 -1.6203 6 7 2.4554 0.1993 -2.2873 7 6 2.4580 -0.1832 -3.5796 8 8 2.1283 -1.3145 -3.8794 9 6 2.8611 0.7712 -4.6311 10 6 3.2348 2.0732 -4.2895 11 6 3.6150 2.9600 -5.2722 12 6 3.6176 2.5689 -6.6060 13 6 3.2424 1.2736 -6.9536 14 6 2.8647 0.3768 -5.9709 15 8 3.2446 0.8734 -8.2549 16 6 3.2723 1.9064 -9.2459 17 6 4.3403 2.9315 -8.8412 18 8 3.9875 3.4643 -7.5600 19 6 3.2876 -1.5132 -0.6947 20 6 2.8146 -1.8805 0.7340 21 7 2.0301 -0.7158 1.1829 22 6 1.8051 -0.3591 2.4857 23 1 1.2143 0.5162 2.7116 24 6 2.3363 -1.1228 3.5159 25 7 3.0558 -2.1900 3.2406 26 14 2.0299 -0.6359 5.2932 27 1 0.7899 -1.2924 5.7795 28 1 3.1789 -1.0670 6.1295 29 1 1.8777 0.8384 5.3833 30 1 -0.3633 -1.0276 0.0182 31 1 -0.3633 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 2.7186 1.1018 -2.0481 34 1 3.2295 2.3830 -3.2548 35 1 3.9082 3.9648 -5.0057 36 1 2.5731 -0.6278 -6.2394 37 1 3.5228 1.4783 -10.2164 38 1 2.2978 2.3921 -9.2981 39 1 5.3135 2.4443 -8.7813 40 1 4.3761 3.7350 -9.5769 41 1 3.4852 -2.4092 -1.2831 42 1 4.1654 -0.8678 -0.6618 43 1 3.6717 -2.0358 1.3892 44 1 2.1892 -2.7729 0.7107 45 1 3.4274 -2.7234 3.9605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089035366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:12 Heat of formation + Delta-G solvation = -70.869790 kcal Electronic energy + Delta-G solvation = -28148.764473 eV Core-core repulsion = 24131.974984 eV Total energy + Delta-G solvation = -4016.789489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34621 -41.13024 -39.38443 -38.33871 -38.17701 -35.66584 -33.93334 -32.34653 -32.00066 -31.82563 -30.57147 -29.48999 -26.74403 -25.98413 -25.73017 -24.11041 -23.02305 -22.04852 -21.53794 -21.10558 -19.84060 -18.90314 -18.64174 -18.30484 -17.49967 -17.30682 -16.64774 -16.50207 -16.02380 -15.93758 -15.72031 -15.58904 -15.42658 -14.99355 -14.93027 -14.84741 -14.37530 -14.29665 -13.99178 -13.69945 -13.54008 -13.22920 -12.91514 -12.86750 -12.74626 -12.59001 -12.26679 -12.21646 -12.08481 -12.01796 -11.96018 -11.55644 -11.54199 -11.42454 -11.06477 -10.71175 -10.08919 -9.77915 -9.21990 -8.87804 -7.72443 -5.17462 -0.31214 0.19663 1.50085 1.51627 1.59994 1.67891 1.89445 2.07925 2.31079 2.54347 2.71800 3.19097 3.38032 3.54063 3.59838 3.73215 3.85809 3.93805 3.96888 4.01839 4.06911 4.13525 4.23539 4.29587 4.52142 4.54063 4.58961 4.64502 4.66730 4.73626 4.82905 4.92965 4.99398 5.01223 5.07078 5.13685 5.19071 5.36066 5.39823 5.52775 5.62370 5.62645 5.81899 5.82553 6.29817 6.32812 6.52900 7.13371 7.17912 7.81201 8.44859 9.29506 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.002234 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.555960 B =12528.883266 C =12847.898737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.057 0.943 4 C 0.151 3.849 5 H 0.081 0.919 6 N -0.695 5.695 7 C 0.562 3.438 8 O -0.581 6.581 9 C -0.140 4.140 10 C -0.068 4.068 11 C -0.118 4.118 12 C 0.074 3.926 13 C 0.033 3.967 14 C -0.070 4.070 15 O -0.325 6.325 16 C 0.012 3.988 17 C 0.014 3.986 18 O -0.312 6.312 19 C -0.139 4.139 20 C 0.157 3.843 21 N -0.613 5.613 22 C -0.224 4.224 23 H 0.087 0.913 24 C -0.071 4.071 25 N -0.952 5.952 26 Si 0.978 3.022 27 H -0.291 1.291 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.159 0.841 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.078 0.922 44 H -0.016 1.016 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 15.112 -25.869 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.046 3.954 5 H 0.099 0.901 6 N -0.347 5.347 7 C 0.351 3.649 8 O -0.462 6.462 9 C -0.144 4.144 10 C -0.087 4.087 11 C -0.136 4.136 12 C 0.028 3.972 13 C -0.012 4.012 14 C -0.089 4.089 15 O -0.241 6.241 16 C -0.063 4.063 17 C -0.061 4.061 18 O -0.227 6.227 19 C -0.179 4.179 20 C 0.032 3.968 21 N -0.338 5.338 22 C -0.353 4.353 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.807 3.193 27 H -0.219 1.219 28 H -0.224 1.224 29 H -0.190 1.190 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.253 0.747 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.177 0.823 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.002 0.998 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.475 14.300 -25.928 29.714 hybrid contribution -0.106 -0.251 1.037 1.073 sum 2.369 14.049 -24.891 28.680 Atomic orbital electron populations 1.22138 0.96600 1.00696 1.01255 1.21203 0.93499 0.95224 0.85653 0.92562 1.21765 0.96381 0.90823 0.86476 0.90100 1.45700 1.67523 1.16470 1.04994 1.18395 0.76777 0.86872 0.82838 1.90764 1.50255 1.22212 1.82933 1.19478 1.07456 0.95228 0.92217 1.21343 0.95687 0.90520 1.01102 1.20678 1.02601 1.02339 0.87986 1.19344 0.98672 0.88421 0.90790 1.18715 1.03843 0.93503 0.85178 1.20418 0.98267 0.99915 0.90346 1.86329 1.90009 1.35588 1.12150 1.24028 1.00502 0.89502 0.92245 1.24027 0.98051 1.00556 0.83419 1.86277 1.81814 1.32849 1.21729 1.23215 0.97738 0.99997 0.96931 1.21672 0.95760 0.87816 0.91597 1.44722 1.59714 1.28540 1.00865 1.19399 1.26185 1.08053 0.81661 0.89540 1.25616 1.00933 0.97793 1.01940 1.70041 1.40431 1.19004 1.30699 0.85072 0.76404 0.78064 0.79761 1.21879 1.22373 1.19038 0.94700 0.93196 0.91130 0.74732 0.81799 0.81376 0.85126 0.82860 0.89931 0.89922 0.82312 0.91722 0.90850 0.90376 0.99784 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.13 71.98 0.66 -4.61 16 2 C 0.15 5.81 3.48 45.34 0.16 5.97 16 3 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 4 C 0.15 5.42 2.84 46.18 0.13 5.55 16 5 H 0.08 3.20 7.26 -2.39 -0.02 3.18 16 6 N -0.70 -19.49 5.13 -439.98 -2.26 -21.74 16 7 C 0.56 17.19 7.77 86.72 0.67 17.87 16 8 O -0.58 -22.66 15.99 -4.01 -0.06 -22.73 16 9 C -0.14 -3.44 5.87 -20.10 -0.12 -3.56 16 10 C -0.07 -1.19 9.53 22.50 0.21 -0.97 16 11 C -0.12 -1.89 9.94 22.33 0.22 -1.67 16 12 C 0.07 1.40 6.50 22.70 0.15 1.54 16 13 C 0.03 0.72 6.49 22.53 0.15 0.87 16 14 C -0.07 -1.79 9.50 22.63 0.22 -1.57 16 15 O -0.33 -6.46 10.41 -83.02 -0.86 -7.33 16 16 C 0.01 0.11 7.26 72.14 0.52 0.64 16 17 C 0.01 0.11 7.26 72.14 0.52 0.64 16 18 O -0.31 -4.84 10.41 -80.95 -0.84 -5.69 16 19 C -0.14 -5.55 6.77 31.99 0.22 -5.34 16 20 C 0.16 7.90 5.89 86.86 0.51 8.41 16 21 N -0.61 -30.45 3.13 -668.25 -2.09 -32.54 16 22 C -0.22 -12.07 9.89 84.03 0.83 -11.24 16 23 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 24 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 25 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 26 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.41 8.79 6.39 -92.71 -0.59 8.20 16 34 H 0.16 1.93 6.39 -2.91 -0.02 1.91 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.13 3.71 7.64 -2.91 -0.02 3.68 16 37 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.08 4.44 5.87 -2.39 -0.01 4.42 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -74.54 366.41 2.08 -72.47 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.43 Total: 17.79 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.52 Total: 9.03 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -4.13 Total: -110.73 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.77 Total: -35.74 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.54 2.08 -72.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089035366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.597 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds