Wall clock time and date at job start Tue Mar 31 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.64325 * 2 1 4 4 C 1.55152 * 110.71920 * 236.85514 * 2 1 3 5 5 C 1.54915 * 101.58322 * 206.13482 * 4 2 1 6 6 H 1.08992 * 110.36605 * 278.17058 * 5 4 2 7 7 C 1.52997 * 110.36703 * 155.84651 * 5 4 2 8 8 N 1.47431 * 104.82864 * 37.01270 * 5 4 2 9 9 C 1.34774 * 125.64810 * 155.91033 * 8 5 4 10 10 O 1.21368 * 120.00061 * 359.97438 * 9 8 5 11 11 C 1.49316 * 120.00168 * 179.97438 * 9 8 5 12 12 O 1.21392 * 119.99780 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00168 * 179.97438 * 11 9 8 14 14 C 1.39740 * 120.00118 * 175.49440 * 13 11 9 15 15 C 1.38994 * 120.00663 * 214.86653 * 14 13 11 16 16 C 1.37969 * 119.99130 * 179.74252 * 15 14 13 17 17 C 1.38932 * 120.00666 * 0.53171 * 16 15 14 18 18 O 1.35758 * 119.99707 * 179.74534 * 17 16 15 19 19 C 1.34803 * 117.00545 * 185.31995 * 18 17 16 20 20 H 1.07999 * 119.99340 * 354.96662 * 19 18 17 21 21 C 1.38650 * 120.00200 * 174.96274 * 19 18 17 22 22 N 1.31558 * 119.99928 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47458 * 90.00014 * 23 21 19 25 25 H 1.48504 * 109.46691 * 210.00158 * 23 21 19 26 26 H 1.48495 * 109.46984 * 329.99229 * 23 21 19 27 27 C 1.38942 * 120.01585 * 359.72002 * 17 16 15 28 28 C 1.37968 * 120.00420 * 0.02562 * 27 17 16 29 29 C 1.47017 * 108.70055 * 335.87041 * 8 5 4 30 30 H 1.09000 * 109.46999 * 183.14201 * 1 2 3 31 31 H 1.09004 * 109.47097 * 303.14463 * 1 2 3 32 32 H 1.08998 * 109.47117 * 63.14280 * 1 2 3 33 33 H 1.09004 * 111.00630 * 324.20792 * 4 2 1 34 34 H 1.08999 * 111.00645 * 88.06440 * 4 2 1 35 35 H 1.09008 * 109.47222 * 60.00345 * 7 5 4 36 36 H 1.09002 * 109.46868 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.47505 * 300.00177 * 7 5 4 38 38 H 0.96996 * 120.00062 * 355.49585 * 13 11 9 39 39 H 1.07997 * 120.00384 * 359.97415 * 15 14 13 40 40 H 1.08003 * 119.99779 * 180.25629 * 16 15 14 41 41 H 0.97001 * 120.00025 * 179.97438 * 22 21 19 42 42 H 1.07999 * 119.99946 * 179.97438 * 27 17 16 43 43 H 1.08000 * 120.00524 * 179.97438 * 28 27 17 44 44 H 1.09010 * 109.88143 * 241.64253 * 29 8 5 45 45 H 1.09001 * 109.88428 * 120.48037 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 -1.2151 5 6 3.4633 -1.2487 -0.6896 6 1 4.1931 -0.4466 -0.7992 7 6 3.9303 -2.5007 -1.4347 8 7 3.2445 -1.5520 0.7365 9 6 3.9922 -2.3861 1.4859 10 8 4.9389 -2.9624 0.9912 11 6 3.6561 -2.6012 2.9247 12 8 2.7095 -2.0245 3.4196 13 7 4.4035 -3.4357 3.6739 14 6 4.1478 -3.5653 5.0416 15 6 5.1979 -3.7709 5.9287 16 6 4.9456 -3.8935 7.2796 17 6 3.6410 -3.8226 7.7519 18 8 3.3924 -3.9484 9.0806 19 6 2.0996 -3.9809 9.4611 20 1 1.3181 -3.8266 8.7318 21 6 1.7732 -4.2123 10.7887 22 7 2.7253 -4.4007 11.6769 23 14 -0.0183 -4.2579 11.3157 24 1 -0.5314 -5.6470 11.2059 25 1 -0.1320 -3.7979 12.7231 26 1 -0.8155 -3.3647 10.4373 27 6 2.5905 -3.6223 6.8649 28 6 2.8427 -3.4944 5.5145 29 6 2.0760 -0.7933 1.2059 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3633 0.5619 0.8605 32 1 -0.3633 0.4643 -0.9168 33 1 1.4451 -1.6512 -1.4402 34 1 2.1850 -0.1484 -2.0873 35 1 4.0091 -2.2816 -2.4996 36 1 4.9041 -2.8082 -1.0536 37 1 3.2102 -3.3046 -1.2814 38 1 5.1190 -3.9463 3.2638 39 1 6.2116 -3.8309 5.5610 40 1 5.7619 -4.0491 7.9694 41 1 2.4970 -4.5622 12.6057 42 1 1.5764 -3.5677 7.2323 43 1 2.0261 -3.3392 4.8249 44 1 2.3741 -0.1057 1.9976 45 1 1.3129 -1.4784 1.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116116838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:44 Heat of formation + Delta-G solvation = -60.251827 kcal Electronic energy + Delta-G solvation = -27923.509684 eV Core-core repulsion = 23907.180624 eV Total energy + Delta-G solvation = -4016.329060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10452 -39.71497 -38.64878 -37.86288 -36.58979 -34.14439 -33.25485 -32.22075 -32.10225 -30.26605 -28.35487 -27.45359 -26.18227 -25.47703 -24.57496 -22.52746 -21.92022 -20.84575 -20.71116 -19.58588 -18.22157 -17.77865 -17.41143 -17.00996 -16.53706 -16.11059 -15.50951 -14.77464 -14.69938 -14.55062 -14.41248 -14.09394 -13.73708 -13.65332 -13.59547 -13.46634 -13.19665 -12.94981 -12.87546 -12.61273 -12.50807 -12.18005 -12.02189 -11.80489 -11.73523 -11.60258 -11.31617 -11.13967 -11.06753 -11.04673 -10.86016 -10.72296 -10.45635 -9.77800 -9.48419 -9.18006 -8.99925 -8.74282 -8.26064 -7.00858 -6.48188 -4.05518 1.29576 2.10464 2.15345 2.34485 3.11412 3.13139 3.17984 3.23958 3.42936 3.94917 4.06907 4.16758 4.38695 4.44041 4.55046 4.80645 4.88911 4.94413 5.06199 5.12290 5.22163 5.23559 5.27936 5.43454 5.47068 5.53059 5.63126 5.67191 5.68338 5.72696 5.81089 5.83448 5.95036 6.05286 6.11152 6.17166 6.24754 6.64498 6.75313 6.91570 6.97198 7.05156 7.24385 7.38302 7.38565 7.69027 7.73921 7.96740 8.12063 8.97375 9.65991 10.69500 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.002438 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.965498 B =11483.060423 C =12793.322840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.132 3.868 6 H 0.080 0.920 7 C -0.165 4.165 8 N -0.589 5.589 9 C 0.526 3.474 10 O -0.522 6.522 11 C 0.497 3.503 12 O -0.505 6.505 13 N -0.625 5.625 14 C 0.024 3.976 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.222 4.222 28 C -0.060 4.060 29 C 0.109 3.891 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.413 0.587 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.271 0.729 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 6.724 -24.929 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.104 0.896 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.098 0.902 7 C -0.222 4.222 8 N -0.324 5.324 9 C 0.310 3.690 10 O -0.399 6.399 11 C 0.278 3.722 12 O -0.380 6.380 13 N -0.270 5.270 14 C -0.069 4.069 15 C -0.105 4.105 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.242 4.242 28 C -0.080 4.080 29 C -0.013 4.013 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.250 0.750 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.247 6.729 -24.338 25.282 hybrid contribution -0.563 -0.185 0.090 0.600 sum -1.811 6.544 -24.248 25.180 Atomic orbital electron populations 1.21748 0.93480 1.02461 1.02248 1.22304 0.96774 0.99447 0.94244 0.89598 1.22986 0.95159 1.00518 0.97772 1.22050 0.97445 0.98158 0.79388 0.90167 1.22161 1.03935 0.96535 0.99574 1.48331 1.29900 1.43225 1.10951 1.19839 0.82660 0.79633 0.86912 1.90705 1.28244 1.47916 1.73013 1.19967 0.84344 0.80843 0.87053 1.90759 1.27178 1.47435 1.72671 1.42828 1.35197 1.41412 1.07592 1.17239 0.94114 1.14426 0.81089 1.20389 0.96789 1.01261 0.92071 1.20001 0.94926 1.10471 0.94361 1.19442 0.93204 0.92772 0.85067 1.83966 1.28959 1.78001 1.16719 1.21355 0.80394 1.50702 0.94290 0.88932 1.25303 1.00170 0.96305 0.94719 1.70038 1.32466 1.44190 1.02831 0.85700 0.80366 0.78931 0.78402 1.19834 1.20232 1.19106 1.21088 1.00006 1.10409 0.92657 1.20831 0.94772 0.97050 0.95335 1.22325 0.87377 0.95209 0.96399 0.92221 0.91951 0.92135 0.90192 0.89643 0.91795 0.89617 0.92476 0.75044 0.86453 0.85854 0.91947 0.85066 0.85694 0.90192 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.16 37.16 0.34 -0.50 16 2 C -0.11 -0.73 3.55 -88.79 -0.31 -1.05 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -0.78 5.95 -24.58 -0.15 -0.92 16 5 C 0.13 1.12 3.77 -66.41 -0.25 0.87 16 6 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.16 -1.42 8.59 37.16 0.32 -1.10 16 8 N -0.59 -6.53 3.24 -163.60 -0.53 -7.06 16 9 C 0.53 7.07 7.69 -11.65 -0.09 6.98 16 10 O -0.52 -7.50 14.20 5.48 0.08 -7.42 16 11 C 0.50 7.52 7.69 -11.65 -0.09 7.43 16 12 O -0.51 -8.54 11.55 5.46 0.06 -8.47 16 13 N -0.62 -9.38 5.32 -10.27 -0.05 -9.43 16 14 C 0.02 0.42 6.30 -83.69 -0.53 -0.11 16 15 C -0.09 -1.49 9.96 -39.40 -0.39 -1.89 16 16 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.89 9.75 0.10 0.00 -4.89 16 19 C -0.39 -10.85 9.48 30.88 0.29 -10.55 16 20 H 0.09 2.38 5.19 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.00 13.67 55.48 0.76 -24.25 16 23 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 28 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 29 C 0.11 1.08 5.08 -3.07 -0.02 1.07 16 30 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.50 7.96 -51.93 -0.41 0.09 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.09 0.93 6.09 -51.93 -0.32 0.61 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 5.27 8.30 -40.82 -0.34 4.93 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 43 H 0.13 2.38 6.22 -52.49 -0.33 2.05 16 44 H 0.08 0.88 7.69 -51.92 -0.40 0.48 16 45 H 0.08 0.90 7.20 -51.93 -0.37 0.52 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -31.71 369.58 -7.56 -39.27 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.10 Total: 7.64 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.33 Total: -6.32 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.17 Total: -40.74 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.14 Total: -20.79 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.71 -7.56 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.986 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds