Wall clock time and date at job start Tue Mar 31 2020 17:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.64325 * 2 1 4 4 C 1.55152 * 110.71920 * 236.85514 * 2 1 3 5 5 C 1.54915 * 101.58322 * 206.13482 * 4 2 1 6 6 H 1.08992 * 110.36605 * 278.17058 * 5 4 2 7 7 C 1.52997 * 110.36703 * 155.84651 * 5 4 2 8 8 N 1.47431 * 104.82864 * 37.01270 * 5 4 2 9 9 C 1.34774 * 125.64810 * 155.91033 * 8 5 4 10 10 O 1.21368 * 120.00061 * 359.97438 * 9 8 5 11 11 C 1.49316 * 120.00168 * 179.97438 * 9 8 5 12 12 O 1.21392 * 119.99780 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00168 * 179.97438 * 11 9 8 14 14 C 1.39740 * 120.00118 * 175.49440 * 13 11 9 15 15 C 1.38994 * 120.00663 * 214.86653 * 14 13 11 16 16 C 1.37969 * 119.99130 * 179.74252 * 15 14 13 17 17 C 1.38932 * 120.00666 * 0.53171 * 16 15 14 18 18 O 1.35758 * 119.99707 * 179.74534 * 17 16 15 19 19 C 1.34803 * 117.00545 * 185.31995 * 18 17 16 20 20 H 1.07999 * 119.99340 * 354.96662 * 19 18 17 21 21 C 1.38650 * 120.00200 * 174.96274 * 19 18 17 22 22 N 1.31558 * 119.99928 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47458 * 90.00014 * 23 21 19 25 25 H 1.48504 * 109.46691 * 210.00158 * 23 21 19 26 26 H 1.48495 * 109.46984 * 329.99229 * 23 21 19 27 27 C 1.38942 * 120.01585 * 359.72002 * 17 16 15 28 28 C 1.37968 * 120.00420 * 0.02562 * 27 17 16 29 29 C 1.47017 * 108.70055 * 335.87041 * 8 5 4 30 30 H 1.09000 * 109.46999 * 183.14201 * 1 2 3 31 31 H 1.09004 * 109.47097 * 303.14463 * 1 2 3 32 32 H 1.08998 * 109.47117 * 63.14280 * 1 2 3 33 33 H 1.09004 * 111.00630 * 324.20792 * 4 2 1 34 34 H 1.08999 * 111.00645 * 88.06440 * 4 2 1 35 35 H 1.09008 * 109.47222 * 60.00345 * 7 5 4 36 36 H 1.09002 * 109.46868 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.47505 * 300.00177 * 7 5 4 38 38 H 0.96996 * 120.00062 * 355.49585 * 13 11 9 39 39 H 1.07997 * 120.00384 * 359.97415 * 15 14 13 40 40 H 1.08003 * 119.99779 * 180.25629 * 16 15 14 41 41 H 0.97001 * 120.00025 * 179.97438 * 22 21 19 42 42 H 1.07999 * 119.99946 * 179.97438 * 27 17 16 43 43 H 1.08000 * 120.00524 * 179.97438 * 28 27 17 44 44 H 1.09010 * 109.88143 * 241.64253 * 29 8 5 45 45 H 1.09001 * 109.88428 * 120.48037 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 -1.2151 5 6 3.4633 -1.2487 -0.6896 6 1 4.1931 -0.4466 -0.7992 7 6 3.9303 -2.5007 -1.4347 8 7 3.2445 -1.5520 0.7365 9 6 3.9922 -2.3861 1.4859 10 8 4.9389 -2.9624 0.9912 11 6 3.6561 -2.6012 2.9247 12 8 2.7095 -2.0245 3.4196 13 7 4.4035 -3.4357 3.6739 14 6 4.1478 -3.5653 5.0416 15 6 5.1979 -3.7709 5.9287 16 6 4.9456 -3.8935 7.2796 17 6 3.6410 -3.8226 7.7519 18 8 3.3924 -3.9484 9.0806 19 6 2.0996 -3.9809 9.4611 20 1 1.3181 -3.8266 8.7318 21 6 1.7732 -4.2123 10.7887 22 7 2.7253 -4.4007 11.6769 23 14 -0.0183 -4.2579 11.3157 24 1 -0.5314 -5.6470 11.2059 25 1 -0.1320 -3.7979 12.7231 26 1 -0.8155 -3.3647 10.4373 27 6 2.5905 -3.6223 6.8649 28 6 2.8427 -3.4944 5.5145 29 6 2.0760 -0.7933 1.2059 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3633 0.5619 0.8605 32 1 -0.3633 0.4643 -0.9168 33 1 1.4451 -1.6512 -1.4402 34 1 2.1850 -0.1484 -2.0873 35 1 4.0091 -2.2816 -2.4996 36 1 4.9041 -2.8082 -1.0536 37 1 3.2102 -3.3046 -1.2814 38 1 5.1190 -3.9463 3.2638 39 1 6.2116 -3.8309 5.5610 40 1 5.7619 -4.0491 7.9694 41 1 2.4970 -4.5622 12.6057 42 1 1.5764 -3.5677 7.2323 43 1 2.0261 -3.3392 4.8249 44 1 2.3741 -0.1057 1.9976 45 1 1.3129 -1.4784 1.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116116838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:43 Heat of formation + Delta-G solvation = -80.594709 kcal Electronic energy + Delta-G solvation = -27924.391817 eV Core-core repulsion = 23907.180624 eV Total energy + Delta-G solvation = -4017.211193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.22817 -41.03002 -40.15040 -38.84554 -38.22059 -35.58256 -34.20665 -33.96563 -32.88135 -31.92033 -29.93184 -28.08774 -27.46151 -26.88226 -25.74865 -24.04013 -23.25567 -22.01840 -21.43854 -20.77302 -19.90480 -19.22033 -18.53024 -18.43312 -17.78660 -17.27345 -16.76012 -16.27686 -16.01607 -15.86115 -15.51577 -15.36376 -15.33345 -14.93026 -14.77421 -14.68568 -14.21348 -14.15296 -13.73826 -13.67118 -13.59100 -13.36188 -13.27984 -13.18952 -12.78495 -12.72314 -12.65528 -12.52066 -12.30777 -12.12908 -11.74831 -11.67765 -11.50191 -11.44900 -11.10512 -10.63578 -10.47199 -9.88808 -9.88722 -8.70905 -8.48093 -6.14916 0.05164 0.49655 0.67725 1.16264 1.35756 1.44427 1.52815 2.03684 2.17433 2.36059 2.78323 3.10633 3.18249 3.47095 3.47782 3.64922 3.84442 4.04646 4.07010 4.14539 4.27528 4.33431 4.43783 4.55378 4.56403 4.62806 4.65282 4.70804 4.82175 4.83644 4.99954 5.02513 5.04587 5.06315 5.11984 5.15010 5.26590 5.30611 5.34988 5.39766 5.47616 5.49769 5.65271 5.93912 6.00746 6.08575 6.19356 6.61647 6.87415 6.96630 7.74492 8.74493 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.002438 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.965498 B =11483.060423 C =12793.322840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.115 4.115 5 C 0.123 3.877 6 H 0.091 0.909 7 C -0.159 4.159 8 N -0.585 5.585 9 C 0.527 3.473 10 O -0.533 6.533 11 C 0.497 3.503 12 O -0.523 6.523 13 N -0.620 5.620 14 C 0.050 3.950 15 C -0.072 4.072 16 C -0.179 4.179 17 C 0.113 3.887 18 O -0.224 6.224 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.017 2.983 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.227 4.227 28 C -0.067 4.067 29 C 0.105 3.895 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.428 0.572 39 H 0.163 0.837 40 H 0.131 0.869 41 H 0.274 0.726 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 7.741 -28.629 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.117 0.883 4 C -0.153 4.153 5 C 0.022 3.978 6 H 0.109 0.891 7 C -0.217 4.217 8 N -0.319 5.319 9 C 0.309 3.691 10 O -0.411 6.411 11 C 0.279 3.721 12 O -0.399 6.399 13 N -0.267 5.267 14 C -0.044 4.044 15 C -0.091 4.091 16 C -0.199 4.199 17 C 0.062 3.938 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.836 3.164 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.178 1.178 27 C -0.246 4.246 28 C -0.087 4.087 29 C -0.018 4.018 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.267 0.733 39 H 0.181 0.819 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.635 7.764 -28.135 29.232 hybrid contribution -0.303 -0.425 0.844 0.993 sum -1.938 7.339 -27.291 28.327 Atomic orbital electron populations 1.21740 0.92794 1.02205 1.03015 1.22296 0.97194 0.99598 0.92811 0.88267 1.22996 0.93252 1.00857 0.98212 1.22370 0.99343 0.98446 0.77620 0.89105 1.22098 1.02215 0.96246 1.01128 1.48499 1.29352 1.41939 1.12067 1.19421 0.83092 0.80498 0.86090 1.90715 1.28831 1.48741 1.72860 1.20429 0.83582 0.80093 0.87973 1.90761 1.27892 1.47940 1.73302 1.42772 1.35782 1.41895 1.06300 1.17370 0.93466 1.10840 0.82676 1.20768 0.98840 0.99041 0.90475 1.20300 0.93890 1.09754 0.95968 1.19957 0.95056 0.94426 0.84374 1.83936 1.29192 1.81028 1.18842 1.21803 0.80894 1.51271 0.95076 0.88233 1.26550 1.05248 0.95615 0.94370 1.70172 1.35092 1.46883 1.03314 0.84612 0.74150 0.79483 0.78154 1.18763 1.19461 1.17844 1.21098 0.99364 1.10636 0.93549 1.20919 0.96100 0.97360 0.94352 1.22414 0.86680 0.94870 0.97808 0.92880 0.92408 0.90301 0.90138 0.86747 0.89161 0.91926 0.93444 0.73299 0.81919 0.85136 0.91738 0.85990 0.85030 0.91561 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.16 71.98 0.66 -0.67 16 2 C -0.10 -1.07 3.55 -9.61 -0.03 -1.11 16 3 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.00 5.95 31.99 0.19 -0.81 16 5 C 0.12 1.74 3.77 45.47 0.17 1.91 16 6 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 7 C -0.16 -2.37 8.59 71.98 0.62 -1.75 16 8 N -0.59 -11.93 3.24 -789.86 -2.56 -14.49 16 9 C 0.53 13.32 7.69 87.23 0.67 13.99 16 10 O -0.53 -14.41 14.20 -3.30 -0.05 -14.46 16 11 C 0.50 14.31 7.69 87.23 0.67 14.98 16 12 O -0.52 -17.23 11.55 -3.38 -0.04 -17.27 16 13 N -0.62 -17.23 5.32 -304.75 -1.62 -18.85 16 14 C 0.05 1.69 6.30 38.24 0.24 1.93 16 15 C -0.07 -2.35 9.96 22.39 0.22 -2.13 16 16 C -0.18 -7.38 9.98 22.37 0.22 -7.16 16 17 C 0.11 5.61 6.65 22.61 0.15 5.76 16 18 O -0.22 -13.36 9.75 -22.56 -0.22 -13.58 16 19 C -0.41 -24.15 9.48 67.92 0.64 -23.51 16 20 H 0.10 5.38 5.19 -2.91 -0.02 5.37 16 21 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 22 N -0.92 -55.89 13.67 21.61 0.30 -55.60 16 23 Si 1.02 42.95 29.55 68.60 2.03 44.97 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 27 C -0.23 -10.30 9.16 22.37 0.20 -10.10 16 28 C -0.07 -2.63 8.69 22.39 0.19 -2.44 16 29 C 0.10 1.93 5.08 86.73 0.44 2.37 16 30 H 0.05 0.58 8.06 -2.39 -0.02 0.56 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.74 7.96 -2.38 -0.02 0.72 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 1.25 6.09 -2.39 -0.01 1.23 16 37 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.43 9.68 8.30 -92.71 -0.77 8.91 16 39 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.12 5.66 5.63 -2.91 -0.02 5.64 16 43 H 0.13 4.96 6.22 -2.91 -0.02 4.95 16 44 H 0.07 1.41 7.69 -2.38 -0.02 1.39 16 45 H 0.07 1.46 7.20 -2.39 -0.02 1.44 16 Total: -1.00 -73.22 369.58 3.83 -69.39 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.26 Total: 29.25 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.74 Total: -9.37 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -3.89 Total: -88.94 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.31 Total: -45.30 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.22 3.83 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.205 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds