Wall clock time and date at job start Tue Mar 31 2020 17:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.32305 * 2 1 4 4 C 1.54917 * 110.36712 * 237.76651 * 2 1 3 5 5 C 1.55152 * 101.58007 * 204.03988 * 4 2 1 6 6 H 1.09004 * 110.72331 * 277.13888 * 5 4 2 7 7 C 1.53000 * 110.71950 * 153.86342 * 5 4 2 8 8 C 1.54322 * 102.94455 * 35.50174 * 5 4 2 9 9 N 1.47018 * 107.27085 * 337.80557 * 8 5 4 10 10 C 1.34784 * 125.65310 * 178.97813 * 9 8 5 11 11 O 1.21355 * 120.00430 * 179.97438 * 10 9 8 12 12 C 1.49318 * 119.99328 * 359.95392 * 10 9 8 13 13 O 1.21392 * 120.00510 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99801 * 179.97438 * 12 10 9 15 15 C 1.39743 * 120.00239 * 175.50013 * 14 12 10 16 16 C 1.38997 * 120.00935 * 214.86913 * 15 14 12 17 17 C 1.37967 * 119.99470 * 179.76046 * 16 15 14 18 18 C 1.38942 * 120.00489 * 0.49288 * 17 16 15 19 19 O 1.35758 * 119.99166 * 179.74221 * 18 17 16 20 20 C 1.34798 * 116.99575 * 185.36423 * 19 18 17 21 21 H 1.07995 * 120.00408 * 354.96850 * 20 19 18 22 22 C 1.38657 * 119.99745 * 174.96065 * 20 19 18 23 23 N 1.31563 * 119.99696 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47269 * 60.00165 * 24 22 20 26 26 H 1.48501 * 109.47156 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47104 * 300.00298 * 24 22 20 28 28 C 1.38942 * 120.01282 * 359.76229 * 18 17 16 29 29 C 1.37965 * 120.00627 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.46769 * 180.69685 * 1 2 3 31 31 H 1.08997 * 109.46686 * 300.69864 * 1 2 3 32 32 H 1.09002 * 109.47289 * 60.70159 * 1 2 3 33 33 H 1.08995 * 111.00024 * 322.11457 * 4 2 1 34 34 H 1.08996 * 111.00432 * 85.96660 * 4 2 1 35 35 H 1.09002 * 109.46940 * 59.99875 * 7 5 4 36 36 H 1.09001 * 109.46896 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47036 * 299.99913 * 7 5 4 38 38 H 1.08997 * 109.88840 * 97.22449 * 8 5 4 39 39 H 1.08999 * 109.88544 * 218.23679 * 8 5 4 40 40 H 0.97000 * 120.00053 * 355.50091 * 14 12 10 41 41 H 1.08004 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.07994 * 119.99669 * 180.25622 * 17 16 15 43 43 H 0.97005 * 119.99317 * 179.97438 * 23 22 20 44 44 H 1.07995 * 119.99321 * 179.97438 * 28 18 17 45 45 H 1.08005 * 120.00141 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7746 -1.2285 5 6 3.4789 -1.1964 -0.7366 6 1 4.1943 -0.3857 -0.8749 7 6 3.9472 -2.4624 -1.4569 8 6 3.2524 -1.4744 0.7644 9 7 2.0454 -0.7381 1.1674 10 6 1.5007 -0.7372 2.4003 11 8 0.4986 -0.0891 2.6205 12 6 2.1301 -1.5341 3.4950 13 8 3.1326 -2.1823 3.2748 14 7 1.5858 -1.5329 4.7280 15 6 2.1184 -2.3510 5.7278 16 6 1.2794 -2.9299 6.6728 17 6 1.8051 -3.7416 7.6568 18 6 3.1742 -3.9722 7.7094 19 8 3.6917 -4.7667 8.6809 20 6 5.0350 -4.8605 8.7437 21 1 5.6454 -4.3832 7.9914 22 6 5.6330 -5.5698 9.7742 23 7 4.8893 -6.1515 10.6904 24 14 7.4944 -5.6992 9.8616 25 1 8.0804 -4.3394 9.9748 26 1 7.8794 -6.5049 11.0482 27 1 8.0032 -6.3566 8.6311 28 6 4.0138 -3.3895 6.7681 29 6 3.4880 -2.5821 5.7806 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3632 0.5246 0.8836 32 1 -0.3634 0.5029 -0.8962 33 1 1.4522 -1.6476 -1.4414 34 1 2.1381 -0.1247 -2.1008 35 1 3.9901 -2.2751 -2.5298 36 1 4.9379 -2.7398 -1.0969 37 1 3.2473 -3.2739 -1.2574 38 1 3.1062 -2.5424 0.9258 39 1 4.1107 -1.1270 1.3395 40 1 0.8242 -0.9641 4.9213 41 1 0.2156 -2.7470 6.6346 42 1 1.1527 -4.1947 8.3885 43 1 5.3077 -6.6480 11.4111 44 1 5.0779 -3.5686 6.8095 45 1 4.1408 -2.1288 5.0492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116116839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:48 Heat of formation + Delta-G solvation = -60.047135 kcal Electronic energy + Delta-G solvation = -27922.101189 eV Core-core repulsion = 23905.781005 eV Total energy + Delta-G solvation = -4016.320184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10478 -39.71415 -38.64833 -37.86614 -36.58936 -34.14333 -33.25126 -32.21952 -32.10287 -30.26571 -28.35419 -27.44928 -26.18344 -25.47576 -24.57390 -22.52968 -21.91659 -20.84502 -20.70464 -19.59549 -18.22119 -17.77561 -17.42081 -16.97490 -16.61613 -15.92057 -15.67292 -14.78613 -14.73145 -14.53124 -14.31296 -14.10493 -13.78936 -13.65423 -13.59915 -13.44543 -13.19231 -12.95352 -12.87527 -12.61122 -12.49832 -12.17337 -12.01775 -11.81412 -11.72653 -11.59818 -11.31507 -11.13952 -11.07801 -11.02499 -10.85421 -10.72740 -10.47384 -9.78214 -9.47914 -9.17801 -8.99752 -8.74033 -8.26026 -7.00803 -6.48005 -4.05389 1.29487 2.10959 2.15427 2.34064 3.12623 3.13019 3.16517 3.23938 3.43002 3.95075 4.07057 4.16883 4.38769 4.44382 4.54842 4.80582 4.89258 4.94701 5.06297 5.12532 5.22206 5.23942 5.28125 5.43944 5.47365 5.53529 5.63167 5.67641 5.68367 5.72445 5.81333 5.83672 5.95491 6.05337 6.11225 6.18111 6.24815 6.64544 6.75329 6.91640 6.97142 7.05118 7.24228 7.38315 7.38589 7.69073 7.73939 7.96776 8.12076 8.97399 9.65977 10.69569 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002421 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.707628 B =11563.408502 C =12783.862309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 H 0.080 0.920 4 C -0.126 4.126 5 C -0.109 4.109 6 H 0.086 0.914 7 C -0.142 4.142 8 C 0.109 3.891 9 N -0.589 5.589 10 C 0.526 3.474 11 O -0.522 6.522 12 C 0.497 3.503 13 O -0.505 6.505 14 N -0.625 5.625 15 C 0.023 3.977 16 C -0.085 4.085 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.222 4.222 29 C -0.060 4.060 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.132 0.868 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 11.297 -22.622 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.164 4.164 5 C -0.127 4.127 6 H 0.104 0.896 7 C -0.199 4.199 8 C -0.013 4.013 9 N -0.324 5.324 10 C 0.310 3.690 11 O -0.399 6.399 12 C 0.278 3.722 13 O -0.380 6.380 14 N -0.270 5.270 15 C -0.069 4.069 16 C -0.105 4.105 17 C -0.198 4.198 18 C 0.095 3.905 19 O -0.076 6.076 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.194 1.194 28 C -0.242 4.242 29 C -0.080 4.080 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.803 10.882 -22.197 25.183 hybrid contribution 0.626 0.196 0.101 0.664 sum -4.177 11.078 -22.096 25.068 Atomic orbital electron populations 1.22178 0.93517 1.02994 1.03661 1.22046 0.95534 0.95598 0.83853 0.90173 1.22987 0.96018 1.00681 0.96762 1.22303 0.97101 0.99284 0.94061 0.89611 1.21745 1.01816 0.96331 1.00045 1.22320 0.86970 0.97720 0.94329 1.48322 1.28167 1.47460 1.08435 1.19840 0.84271 0.82308 0.82609 1.90697 1.24559 1.42946 1.81667 1.19970 0.85492 0.83147 0.83603 1.90758 1.23564 1.41838 1.81884 1.42830 1.33960 1.41877 1.08360 1.17239 0.92667 1.02984 0.93989 1.20390 0.97942 0.97090 0.95088 1.20000 0.92966 1.04684 1.02111 1.19444 0.92522 0.89564 0.88963 1.83966 1.23979 1.55043 1.44618 1.21307 0.78565 1.35010 1.11919 0.88981 1.25303 1.00592 0.95940 0.94640 1.70034 1.35946 1.31056 1.12494 0.85771 0.80488 0.78835 0.78313 1.19440 1.20255 1.19429 1.21084 1.00817 1.04318 0.97950 1.20831 0.92859 0.97290 0.96999 0.92483 0.89498 0.91790 0.90187 0.89643 0.92137 0.91955 0.92193 0.89954 0.90226 0.75043 0.86457 0.85858 0.91894 0.85073 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 8.66 37.16 0.32 -1.12 16 2 C 0.13 1.12 3.76 -66.41 -0.25 0.87 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -0.78 5.95 -24.58 -0.15 -0.93 16 5 C -0.11 -0.73 3.55 -88.79 -0.31 -1.05 16 6 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 7 C -0.14 -0.86 9.16 37.16 0.34 -0.51 16 8 C 0.11 1.08 5.08 -3.07 -0.02 1.06 16 9 N -0.59 -6.53 3.24 -163.60 -0.53 -7.06 16 10 C 0.53 7.07 7.69 -11.64 -0.09 6.98 16 11 O -0.52 -7.49 14.17 5.49 0.08 -7.41 16 12 C 0.50 7.52 7.69 -11.65 -0.09 7.43 16 13 O -0.51 -8.54 11.55 5.46 0.06 -8.47 16 14 N -0.62 -9.38 5.32 -10.27 -0.05 -9.43 16 15 C 0.02 0.42 6.30 -83.69 -0.53 -0.11 16 16 C -0.09 -1.49 9.96 -39.40 -0.39 -1.89 16 17 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 18 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 19 O -0.17 -4.88 9.75 0.11 0.00 -4.88 16 20 C -0.39 -10.87 9.48 30.89 0.29 -10.57 16 21 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 24 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 29 C -0.06 -1.18 8.68 -39.40 -0.34 -1.53 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.95 6.00 -51.93 -0.31 0.64 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.51 7.96 -51.93 -0.41 0.10 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 38 H 0.08 0.92 7.20 -51.93 -0.37 0.55 16 39 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.41 5.27 8.30 -40.82 -0.34 4.93 16 41 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 42 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 2.90 5.63 -52.49 -0.30 2.60 16 45 H 0.13 2.38 6.22 -52.48 -0.33 2.06 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -31.68 369.52 -7.55 -39.23 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.09 Total: 7.71 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.32 Total: -6.38 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.17 Total: -40.74 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.14 Total: -20.77 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.68 -7.55 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.817 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds