Wall clock time and date at job start Tue Mar 31 2020 17:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.32305 * 2 1 4 4 C 1.54917 * 110.36712 * 237.76651 * 2 1 3 5 5 C 1.55152 * 101.58007 * 204.03988 * 4 2 1 6 6 H 1.09004 * 110.72331 * 277.13888 * 5 4 2 7 7 C 1.53000 * 110.71950 * 153.86342 * 5 4 2 8 8 C 1.54322 * 102.94455 * 35.50174 * 5 4 2 9 9 N 1.47018 * 107.27085 * 337.80557 * 8 5 4 10 10 C 1.34784 * 125.65310 * 178.97813 * 9 8 5 11 11 O 1.21355 * 120.00430 * 179.97438 * 10 9 8 12 12 C 1.49318 * 119.99328 * 359.95392 * 10 9 8 13 13 O 1.21392 * 120.00510 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99801 * 179.97438 * 12 10 9 15 15 C 1.39743 * 120.00239 * 175.50013 * 14 12 10 16 16 C 1.38997 * 120.00935 * 214.86913 * 15 14 12 17 17 C 1.37967 * 119.99470 * 179.76046 * 16 15 14 18 18 C 1.38942 * 120.00489 * 0.49288 * 17 16 15 19 19 O 1.35758 * 119.99166 * 179.74221 * 18 17 16 20 20 C 1.34798 * 116.99575 * 185.36423 * 19 18 17 21 21 H 1.07995 * 120.00408 * 354.96850 * 20 19 18 22 22 C 1.38657 * 119.99745 * 174.96065 * 20 19 18 23 23 N 1.31563 * 119.99696 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47269 * 60.00165 * 24 22 20 26 26 H 1.48501 * 109.47156 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47104 * 300.00298 * 24 22 20 28 28 C 1.38942 * 120.01282 * 359.76229 * 18 17 16 29 29 C 1.37965 * 120.00627 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.46769 * 180.69685 * 1 2 3 31 31 H 1.08997 * 109.46686 * 300.69864 * 1 2 3 32 32 H 1.09002 * 109.47289 * 60.70159 * 1 2 3 33 33 H 1.08995 * 111.00024 * 322.11457 * 4 2 1 34 34 H 1.08996 * 111.00432 * 85.96660 * 4 2 1 35 35 H 1.09002 * 109.46940 * 59.99875 * 7 5 4 36 36 H 1.09001 * 109.46896 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47036 * 299.99913 * 7 5 4 38 38 H 1.08997 * 109.88840 * 97.22449 * 8 5 4 39 39 H 1.08999 * 109.88544 * 218.23679 * 8 5 4 40 40 H 0.97000 * 120.00053 * 355.50091 * 14 12 10 41 41 H 1.08004 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.07994 * 119.99669 * 180.25622 * 17 16 15 43 43 H 0.97005 * 119.99317 * 179.97438 * 23 22 20 44 44 H 1.07995 * 119.99321 * 179.97438 * 28 18 17 45 45 H 1.08005 * 120.00141 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7746 -1.2285 5 6 3.4789 -1.1964 -0.7366 6 1 4.1943 -0.3857 -0.8749 7 6 3.9472 -2.4624 -1.4569 8 6 3.2524 -1.4744 0.7644 9 7 2.0454 -0.7381 1.1674 10 6 1.5007 -0.7372 2.4003 11 8 0.4986 -0.0891 2.6205 12 6 2.1301 -1.5341 3.4950 13 8 3.1326 -2.1823 3.2748 14 7 1.5858 -1.5329 4.7280 15 6 2.1184 -2.3510 5.7278 16 6 1.2794 -2.9299 6.6728 17 6 1.8051 -3.7416 7.6568 18 6 3.1742 -3.9722 7.7094 19 8 3.6917 -4.7667 8.6809 20 6 5.0350 -4.8605 8.7437 21 1 5.6454 -4.3832 7.9914 22 6 5.6330 -5.5698 9.7742 23 7 4.8893 -6.1515 10.6904 24 14 7.4944 -5.6992 9.8616 25 1 8.0804 -4.3394 9.9748 26 1 7.8794 -6.5049 11.0482 27 1 8.0032 -6.3566 8.6311 28 6 4.0138 -3.3895 6.7681 29 6 3.4880 -2.5821 5.7806 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3632 0.5246 0.8836 32 1 -0.3634 0.5029 -0.8962 33 1 1.4522 -1.6476 -1.4414 34 1 2.1381 -0.1247 -2.1008 35 1 3.9901 -2.2751 -2.5298 36 1 4.9379 -2.7398 -1.0969 37 1 3.2473 -3.2739 -1.2574 38 1 3.1062 -2.5424 0.9258 39 1 4.1107 -1.1270 1.3395 40 1 0.8242 -0.9641 4.9213 41 1 0.2156 -2.7470 6.6346 42 1 1.1527 -4.1947 8.3885 43 1 5.3077 -6.6480 11.4111 44 1 5.0779 -3.5686 6.8095 45 1 4.1408 -2.1288 5.0492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116116839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:47 Heat of formation + Delta-G solvation = -80.370912 kcal Electronic energy + Delta-G solvation = -27922.982494 eV Core-core repulsion = 23905.781005 eV Total energy + Delta-G solvation = -4017.201489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22794 -41.02957 -40.14989 -38.84817 -38.21990 -35.58141 -34.20507 -33.96394 -32.88300 -31.91983 -29.93090 -28.08777 -27.45963 -26.88421 -25.74869 -24.04087 -23.25461 -22.01362 -21.43746 -20.78051 -19.90576 -19.22136 -18.52830 -18.40557 -17.86790 -17.13910 -16.75327 -16.36242 -16.19878 -15.63334 -15.51984 -15.34835 -15.33570 -15.02497 -14.73792 -14.66737 -14.19785 -14.18013 -13.75793 -13.66678 -13.58782 -13.33779 -13.27264 -13.19747 -12.79061 -12.70860 -12.65755 -12.51690 -12.31019 -12.15197 -11.74478 -11.68139 -11.49315 -11.46322 -11.09503 -10.63167 -10.46751 -9.88987 -9.88337 -8.70830 -8.47866 -6.14766 0.05142 0.49739 0.68082 1.16054 1.35682 1.45812 1.51478 2.03782 2.17653 2.36040 2.78387 3.10688 3.18285 3.47076 3.47889 3.65018 3.84358 4.04743 4.07076 4.14515 4.27773 4.33408 4.43831 4.55425 4.56492 4.62684 4.65314 4.71003 4.82089 4.83514 5.00037 5.02488 5.04418 5.06295 5.11926 5.14951 5.26606 5.30431 5.35062 5.40058 5.47776 5.49953 5.65311 5.93988 6.00687 6.08632 6.19393 6.61702 6.87461 6.96670 7.74515 8.74452 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002421 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.707628 B =11563.408502 C =12783.862309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.100 4.100 6 H 0.100 0.900 7 C -0.140 4.140 8 C 0.104 3.896 9 N -0.585 5.585 10 C 0.527 3.473 11 O -0.533 6.533 12 C 0.497 3.503 13 O -0.523 6.523 14 N -0.620 5.620 15 C 0.049 3.951 16 C -0.072 4.072 17 C -0.180 4.180 18 C 0.113 3.887 19 O -0.224 6.224 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.020 4.020 23 N -0.917 5.917 24 Si 1.016 2.984 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.258 1.258 28 C -0.227 4.227 29 C -0.067 4.067 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.428 0.572 41 H 0.163 0.837 42 H 0.131 0.869 43 H 0.274 0.726 44 H 0.123 0.877 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 13.226 -25.971 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.110 0.890 4 C -0.154 4.154 5 C -0.119 4.119 6 H 0.119 0.881 7 C -0.198 4.198 8 C -0.018 4.018 9 N -0.318 5.318 10 C 0.309 3.691 11 O -0.411 6.411 12 C 0.279 3.721 13 O -0.399 6.399 14 N -0.268 5.268 15 C -0.044 4.044 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.062 3.938 19 O -0.130 6.130 20 C -0.491 4.491 21 H 0.118 0.882 22 C -0.218 4.218 23 N -0.554 5.554 24 Si 0.835 3.165 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.247 4.247 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.267 0.733 41 H 0.181 0.819 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.184 12.862 -25.625 29.137 hybrid contribution 0.517 -0.200 0.833 1.001 sum -4.667 12.662 -24.792 28.227 Atomic orbital electron populations 1.22115 0.93594 1.02303 1.03834 1.22367 0.95541 0.96274 0.83577 0.88997 1.22998 0.95018 1.00855 0.96496 1.22297 0.98008 1.00115 0.91433 0.88134 1.21738 1.01296 0.95673 1.01065 1.22411 0.86086 0.96563 0.96746 1.48490 1.28131 1.46940 1.08276 1.19423 0.84301 0.82382 0.82983 1.90708 1.24954 1.43549 1.81920 1.20432 0.84979 0.82704 0.83966 1.90760 1.24398 1.42455 1.82279 1.42775 1.34378 1.41751 1.07849 1.17371 0.92065 1.01239 0.93690 1.20769 1.00084 0.95014 0.93272 1.20299 0.91808 1.04851 1.02966 1.19961 0.94142 0.90567 0.89155 1.83936 1.24214 1.57845 1.46977 1.21767 0.79095 1.35624 1.12654 0.88230 1.26553 1.06051 0.95249 0.93911 1.70171 1.38309 1.33147 1.13818 0.84681 0.73630 0.79376 0.78764 1.18215 1.19466 1.18285 1.21099 1.00448 1.04776 0.98339 1.20921 0.94069 0.97166 0.96568 0.93474 0.91814 0.89168 0.90258 0.86715 0.90285 0.92371 0.93008 0.91599 0.91311 0.73299 0.81934 0.85148 0.91732 0.85962 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.66 71.98 0.62 -1.78 16 2 C 0.12 1.74 3.76 45.47 0.17 1.91 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -1.02 5.95 31.99 0.19 -0.83 16 5 C -0.10 -1.07 3.55 -9.61 -0.03 -1.10 16 6 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 7 C -0.14 -1.36 9.16 71.98 0.66 -0.70 16 8 C 0.10 1.92 5.08 86.73 0.44 2.36 16 9 N -0.58 -11.92 3.24 -789.87 -2.56 -14.48 16 10 C 0.53 13.32 7.69 87.23 0.67 13.99 16 11 O -0.53 -14.39 14.17 -3.26 -0.05 -14.44 16 12 C 0.50 14.30 7.69 87.23 0.67 14.97 16 13 O -0.52 -17.22 11.55 -3.38 -0.04 -17.26 16 14 N -0.62 -17.23 5.32 -304.74 -1.62 -18.85 16 15 C 0.05 1.68 6.30 38.24 0.24 1.92 16 16 C -0.07 -2.36 9.96 22.39 0.22 -2.14 16 17 C -0.18 -7.39 9.98 22.37 0.22 -7.17 16 18 C 0.11 5.60 6.65 22.61 0.15 5.75 16 19 O -0.22 -13.34 9.75 -22.51 -0.22 -13.56 16 20 C -0.42 -24.21 9.48 67.92 0.64 -23.57 16 21 H 0.10 5.37 5.19 -2.91 -0.02 5.36 16 22 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 23 N -0.92 -55.90 13.67 21.61 0.30 -55.60 16 24 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 28 C -0.23 -10.30 9.16 22.37 0.20 -10.10 16 29 C -0.07 -2.63 8.68 22.39 0.19 -2.43 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 1.28 6.00 -2.39 -0.01 1.27 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.75 7.96 -2.39 -0.02 0.73 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.59 8.06 -2.39 -0.02 0.57 16 38 H 0.07 1.44 7.20 -2.39 -0.02 1.42 16 39 H 0.07 1.42 7.69 -2.39 -0.02 1.40 16 40 H 0.43 9.67 8.30 -92.71 -0.77 8.91 16 41 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 42 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 43 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 44 H 0.12 5.66 5.63 -2.91 -0.02 5.64 16 45 H 0.13 4.97 6.22 -2.91 -0.02 4.95 16 Total: -1.00 -73.19 369.52 3.84 -69.36 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.26 Total: 29.43 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.74 Total: -9.54 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -3.89 Total: -88.93 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.30 Total: -45.26 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.19 3.84 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.013 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds