Wall clock time and date at job start Tue Mar 31 2020 17:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.88650 * 2 1 4 4 C 1.55156 * 111.00284 * 123.88663 * 2 1 3 5 5 C 1.54329 * 102.94013 * 153.61457 * 4 2 1 6 6 H 1.09004 * 110.00765 * 218.31194 * 5 4 2 7 7 C 1.53003 * 109.88115 * 97.22314 * 5 4 2 8 8 N 1.47020 * 107.27086 * 337.80345 * 5 4 2 9 9 C 1.34781 * 125.64385 * 178.90651 * 8 5 4 10 10 O 1.21357 * 120.00184 * 359.97438 * 9 8 5 11 11 C 1.49322 * 119.99419 * 180.02562 * 9 8 5 12 12 O 1.21386 * 120.00296 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99771 * 180.02562 * 11 9 8 14 14 C 1.39737 * 120.00122 * 174.78729 * 13 11 9 15 15 C 1.38996 * 120.00846 * 326.25853 * 14 13 11 16 16 C 1.37968 * 119.99556 * 179.72070 * 15 14 13 17 17 C 1.38935 * 120.00324 * 0.28449 * 16 15 14 18 18 O 1.35758 * 119.98982 * 180.02562 * 17 16 15 19 19 C 1.34800 * 117.00173 * 354.07120 * 18 17 16 20 20 H 1.07999 * 120.00265 * 354.60354 * 19 18 17 21 21 C 1.38657 * 120.00082 * 174.59488 * 19 18 17 22 22 N 1.31556 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99799 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47529 * 60.00035 * 23 21 19 25 25 H 1.48503 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47456 * 299.99900 * 23 21 19 27 27 C 1.38935 * 120.01680 * 359.97438 * 17 16 15 28 28 C 1.37963 * 120.00809 * 0.02801 * 27 17 16 29 29 C 1.47423 * 108.70200 * 359.16842 * 8 5 4 30 30 H 1.08998 * 109.47147 * 296.11730 * 1 2 3 31 31 H 1.08999 * 109.47022 * 56.11955 * 1 2 3 32 32 H 1.09000 * 109.46835 * 176.11606 * 1 2 3 33 33 H 1.08994 * 110.72185 * 35.25055 * 4 2 1 34 34 H 1.09006 * 110.71788 * 271.97403 * 4 2 1 35 35 H 1.08995 * 109.46843 * 300.73365 * 7 5 4 36 36 H 1.09003 * 109.47312 * 60.73887 * 7 5 4 37 37 H 1.09002 * 109.46920 * 180.73644 * 7 5 4 38 38 H 0.97007 * 120.00105 * 354.78396 * 13 11 9 39 39 H 1.08002 * 120.00002 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.99577 * 180.26038 * 16 15 14 41 41 H 0.97002 * 119.99641 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.99454 * 180.02562 * 27 17 16 43 43 H 1.08000 * 120.00494 * 179.97438 * 28 27 17 44 44 H 1.09001 * 110.36153 * 142.73970 * 29 8 5 45 45 H 1.08995 * 110.37030 * 265.05698 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8076 1.2024 5 6 3.4679 -1.2731 0.6967 6 1 3.6686 -2.2877 1.0409 7 6 4.5553 -0.3259 1.2079 8 7 3.4280 -1.2422 -0.7726 9 6 4.4495 -1.5589 -1.5929 10 8 5.5157 -1.9055 -1.1284 11 6 4.2694 -1.4824 -3.0733 12 8 3.2030 -1.1353 -3.5379 13 7 5.2906 -1.7996 -3.8936 14 6 5.0915 -1.8337 -5.2763 15 6 3.8660 -2.2384 -5.7924 16 6 3.6678 -2.2664 -7.1574 17 6 4.6950 -1.8957 -8.0164 18 8 4.4995 -1.9228 -9.3595 19 6 3.3319 -2.4344 -9.7978 20 1 2.6401 -2.8785 -9.0974 21 6 3.0190 -2.3903 -11.1479 22 7 3.8619 -1.8497 -12.0011 23 14 1.4006 -3.0985 -11.7551 24 1 0.2727 -2.3869 -11.1020 25 1 1.3075 -2.9289 -13.2275 26 1 1.3354 -4.5435 -11.4187 27 6 5.9218 -1.4963 -7.5010 28 6 6.1207 -1.4681 -6.1361 29 6 2.0878 -0.8012 -1.2000 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 1.4472 -1.6631 1.4210 34 1 2.1916 -0.1695 2.0799 35 1 4.3525 0.6848 0.8537 36 1 4.5617 -0.3345 2.2978 37 1 5.5263 -0.6531 0.8362 38 1 6.1639 -2.0043 -3.5242 39 1 3.0674 -2.5262 -5.1247 40 1 2.7142 -2.5768 -7.5583 41 1 3.6431 -1.8192 -12.9456 42 1 6.7199 -1.2078 -8.1690 43 1 7.0745 -1.1580 -5.7355 44 1 2.1613 -0.1637 -2.0811 45 1 1.4527 -1.6627 -1.4061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116116840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:52 Heat of formation + Delta-G solvation = -61.843776 kcal Electronic energy + Delta-G solvation = -27904.005330 eV Core-core repulsion = 23887.607238 eV Total energy + Delta-G solvation = -4016.398092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10980 -39.72309 -38.66810 -37.89026 -36.60861 -34.15403 -33.21901 -32.22672 -32.06037 -30.28071 -28.36457 -27.37914 -26.21073 -25.52177 -24.69471 -22.57062 -21.97341 -21.00921 -20.45041 -19.57626 -18.33560 -17.85719 -17.15624 -16.96071 -16.43888 -16.23244 -15.71471 -14.87482 -14.64284 -14.52035 -14.12576 -14.10127 -13.82135 -13.72021 -13.62075 -13.56361 -13.09022 -12.93258 -12.87447 -12.63486 -12.56380 -12.31471 -12.00158 -11.83121 -11.76483 -11.59202 -11.39044 -11.04624 -11.02755 -11.00295 -10.86053 -10.80492 -10.48338 -9.74731 -9.54587 -9.26903 -9.01293 -8.73879 -8.27183 -7.00196 -6.48524 -4.05781 1.27333 2.11693 2.14558 2.32116 3.12067 3.12921 3.16280 3.23991 3.43057 3.94723 4.08576 4.16463 4.40222 4.46133 4.53518 4.70547 4.96518 4.98428 5.06830 5.07101 5.20086 5.25860 5.31488 5.39479 5.44689 5.54202 5.60110 5.62152 5.65262 5.70979 5.79870 5.88052 5.93375 6.04423 6.08032 6.11216 6.22636 6.63783 6.73636 6.90452 6.96833 7.04395 7.22012 7.36806 7.37660 7.68122 7.72368 7.96034 8.10788 8.96866 9.65500 10.69078 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002431 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.027483 B =11514.802817 C =12777.591213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.588 5.588 9 C 0.525 3.475 10 O -0.523 6.523 11 C 0.498 3.502 12 O -0.504 6.504 13 N -0.625 5.625 14 C 0.026 3.974 15 C -0.060 4.060 16 C -0.219 4.219 17 C 0.149 3.851 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.177 4.177 28 C -0.085 4.085 29 C 0.099 3.901 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 2.331 25.201 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.029 3.971 6 H 0.097 0.903 7 C -0.223 4.223 8 N -0.322 5.322 9 C 0.309 3.691 10 O -0.400 6.400 11 C 0.279 3.721 12 O -0.380 6.380 13 N -0.270 5.270 14 C -0.066 4.066 15 C -0.080 4.080 16 C -0.239 4.239 17 C 0.094 3.906 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.197 4.197 28 C -0.106 4.106 29 C -0.023 4.023 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.346 2.462 24.620 24.968 hybrid contribution -0.421 -0.445 -0.065 0.616 sum -3.767 2.017 24.555 24.924 Atomic orbital electron populations 1.21686 0.93407 1.02438 1.02297 1.22387 0.96522 0.99526 0.94311 0.89701 1.22824 0.94636 1.00501 0.98317 1.21688 0.96229 1.00220 0.78939 0.90261 1.22165 0.99731 0.99310 1.01054 1.48329 1.12758 1.64612 1.06527 1.19832 0.83403 0.78603 0.87310 1.90736 1.25483 1.46494 1.77256 1.19936 0.85306 0.79665 0.87175 1.90741 1.25885 1.44590 1.76766 1.42868 1.13477 1.65565 1.05113 1.17214 0.97184 1.11787 0.80422 1.20687 0.95579 0.96919 0.94817 1.21064 1.00568 1.09807 0.92460 1.19441 0.93051 0.93017 0.85052 1.83981 1.37933 1.70264 1.15391 1.21296 0.95294 1.37402 0.92768 0.89029 1.25303 0.99388 0.96939 0.94842 1.70027 1.35229 1.40950 1.03268 0.85775 0.80218 0.79361 0.78077 1.19416 1.20250 1.19445 1.19996 0.96458 1.09285 0.93949 1.20374 0.97685 1.00163 0.92333 1.22754 0.81793 0.99385 0.98382 0.92120 0.91919 0.92205 0.90266 0.89685 0.92346 0.91481 0.90923 0.75044 0.86209 0.85048 0.91878 0.85837 0.86442 0.87821 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.31 37.16 0.35 -0.46 16 2 C -0.11 -0.75 3.62 -88.59 -0.32 -1.08 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.76 5.97 -24.89 -0.15 -0.91 16 5 C 0.13 1.14 3.50 -66.95 -0.23 0.90 16 6 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 7 C -0.16 -1.36 9.06 37.16 0.34 -1.03 16 8 N -0.59 -6.56 3.08 -163.70 -0.50 -7.06 16 9 C 0.53 7.13 7.69 -11.64 -0.09 7.04 16 10 O -0.52 -7.73 15.37 5.49 0.08 -7.65 16 11 C 0.50 7.55 7.59 -11.65 -0.09 7.46 16 12 O -0.50 -8.52 11.48 5.47 0.06 -8.46 16 13 N -0.62 -9.39 5.32 -10.27 -0.05 -9.44 16 14 C 0.03 0.47 6.27 -83.69 -0.52 -0.06 16 15 C -0.06 -1.18 8.65 -39.40 -0.34 -1.52 16 16 C -0.22 -4.83 9.12 -39.42 -0.36 -5.19 16 17 C 0.15 3.55 6.65 -39.07 -0.26 3.29 16 18 O -0.17 -4.86 9.75 0.11 0.00 -4.86 16 19 C -0.39 -10.82 9.44 30.89 0.29 -10.53 16 20 H 0.09 2.34 5.29 -52.49 -0.28 2.07 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 23 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.18 -3.64 9.98 -39.42 -0.39 -4.03 16 28 C -0.09 -1.50 9.96 -39.40 -0.39 -1.89 16 29 C 0.10 0.98 5.52 -2.65 -0.01 0.96 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.08 0.42 8.04 -51.93 -0.42 0.01 16 34 H 0.08 0.40 7.83 -51.93 -0.41 -0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.76 6.74 -51.93 -0.35 0.41 16 38 H 0.41 5.28 8.29 -40.82 -0.34 4.94 16 39 H 0.12 2.26 6.43 -52.49 -0.34 1.93 16 40 H 0.13 2.90 5.71 -52.49 -0.30 2.60 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.22 6.17 -51.93 -0.32 0.90 16 45 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -31.75 371.21 -7.47 -39.22 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.10 Total: 7.55 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.29 Total: -6.03 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.20 Total: -40.70 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.15 Total: -20.96 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.75 -7.47 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.623 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds