Wall clock time and date at job start Tue Mar 31 2020 17:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.88650 * 2 1 4 4 C 1.55156 * 111.00284 * 123.88663 * 2 1 3 5 5 C 1.54329 * 102.94013 * 153.61457 * 4 2 1 6 6 H 1.09004 * 110.00765 * 218.31194 * 5 4 2 7 7 C 1.53003 * 109.88115 * 97.22314 * 5 4 2 8 8 N 1.47020 * 107.27086 * 337.80345 * 5 4 2 9 9 C 1.34781 * 125.64385 * 178.90651 * 8 5 4 10 10 O 1.21357 * 120.00184 * 359.97438 * 9 8 5 11 11 C 1.49322 * 119.99419 * 180.02562 * 9 8 5 12 12 O 1.21386 * 120.00296 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99771 * 180.02562 * 11 9 8 14 14 C 1.39737 * 120.00122 * 174.78729 * 13 11 9 15 15 C 1.38996 * 120.00846 * 326.25853 * 14 13 11 16 16 C 1.37968 * 119.99556 * 179.72070 * 15 14 13 17 17 C 1.38935 * 120.00324 * 0.28449 * 16 15 14 18 18 O 1.35758 * 119.98982 * 180.02562 * 17 16 15 19 19 C 1.34800 * 117.00173 * 354.07120 * 18 17 16 20 20 H 1.07999 * 120.00265 * 354.60354 * 19 18 17 21 21 C 1.38657 * 120.00082 * 174.59488 * 19 18 17 22 22 N 1.31556 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99799 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47529 * 60.00035 * 23 21 19 25 25 H 1.48503 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47456 * 299.99900 * 23 21 19 27 27 C 1.38935 * 120.01680 * 359.97438 * 17 16 15 28 28 C 1.37963 * 120.00809 * 0.02801 * 27 17 16 29 29 C 1.47423 * 108.70200 * 359.16842 * 8 5 4 30 30 H 1.08998 * 109.47147 * 296.11730 * 1 2 3 31 31 H 1.08999 * 109.47022 * 56.11955 * 1 2 3 32 32 H 1.09000 * 109.46835 * 176.11606 * 1 2 3 33 33 H 1.08994 * 110.72185 * 35.25055 * 4 2 1 34 34 H 1.09006 * 110.71788 * 271.97403 * 4 2 1 35 35 H 1.08995 * 109.46843 * 300.73365 * 7 5 4 36 36 H 1.09003 * 109.47312 * 60.73887 * 7 5 4 37 37 H 1.09002 * 109.46920 * 180.73644 * 7 5 4 38 38 H 0.97007 * 120.00105 * 354.78396 * 13 11 9 39 39 H 1.08002 * 120.00002 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.99577 * 180.26038 * 16 15 14 41 41 H 0.97002 * 119.99641 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.99454 * 180.02562 * 27 17 16 43 43 H 1.08000 * 120.00494 * 179.97438 * 28 27 17 44 44 H 1.09001 * 110.36153 * 142.73970 * 29 8 5 45 45 H 1.08995 * 110.37030 * 265.05698 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8076 1.2024 5 6 3.4679 -1.2731 0.6967 6 1 3.6686 -2.2877 1.0409 7 6 4.5553 -0.3259 1.2079 8 7 3.4280 -1.2422 -0.7726 9 6 4.4495 -1.5589 -1.5929 10 8 5.5157 -1.9055 -1.1284 11 6 4.2694 -1.4824 -3.0733 12 8 3.2030 -1.1353 -3.5379 13 7 5.2906 -1.7996 -3.8936 14 6 5.0915 -1.8337 -5.2763 15 6 3.8660 -2.2384 -5.7924 16 6 3.6678 -2.2664 -7.1574 17 6 4.6950 -1.8957 -8.0164 18 8 4.4995 -1.9228 -9.3595 19 6 3.3319 -2.4344 -9.7978 20 1 2.6401 -2.8785 -9.0974 21 6 3.0190 -2.3903 -11.1479 22 7 3.8619 -1.8497 -12.0011 23 14 1.4006 -3.0985 -11.7551 24 1 0.2727 -2.3869 -11.1020 25 1 1.3075 -2.9289 -13.2275 26 1 1.3354 -4.5435 -11.4187 27 6 5.9218 -1.4963 -7.5010 28 6 6.1207 -1.4681 -6.1361 29 6 2.0878 -0.8012 -1.2000 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 1.4472 -1.6631 1.4210 34 1 2.1916 -0.1695 2.0799 35 1 4.3525 0.6848 0.8537 36 1 4.5617 -0.3345 2.2978 37 1 5.5263 -0.6531 0.8362 38 1 6.1639 -2.0043 -3.5242 39 1 3.0674 -2.5262 -5.1247 40 1 2.7142 -2.5768 -7.5583 41 1 3.6431 -1.8192 -12.9456 42 1 6.7199 -1.2078 -8.1690 43 1 7.0745 -1.1580 -5.7355 44 1 2.1613 -0.1637 -2.0811 45 1 1.4527 -1.6627 -1.4061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116116840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:51 Heat of formation + Delta-G solvation = -82.133290 kcal Electronic energy + Delta-G solvation = -27904.885149 eV Core-core repulsion = 23887.607238 eV Total energy + Delta-G solvation = -4017.277911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24086 -41.02917 -40.15795 -38.90340 -38.23434 -35.59515 -34.20186 -33.93672 -32.83082 -31.92793 -29.93798 -28.01843 -27.43807 -26.90650 -25.89358 -24.06079 -23.29868 -22.11480 -21.38712 -20.65553 -19.94124 -19.30608 -18.66736 -18.26605 -17.51058 -17.37007 -16.85715 -16.30325 -16.10448 -15.93137 -15.52789 -15.35875 -15.23461 -14.80096 -14.75429 -14.65535 -14.30133 -14.17183 -13.83364 -13.60164 -13.53295 -13.32832 -13.29318 -13.20951 -12.97207 -12.69405 -12.59917 -12.53366 -12.43137 -12.15311 -11.76338 -11.58784 -11.45008 -11.40697 -11.18443 -10.67768 -10.51988 -9.92470 -9.88686 -8.69403 -8.47887 -6.14549 0.02112 0.49137 0.69692 1.13712 1.35844 1.45917 1.51596 2.02263 2.17709 2.35882 2.78749 3.12070 3.16804 3.47375 3.48565 3.62186 3.89878 4.02533 4.06547 4.07955 4.29946 4.36892 4.44048 4.48642 4.52924 4.61810 4.66266 4.78811 4.82271 4.87183 4.90835 5.02860 5.03323 5.06043 5.10615 5.20791 5.25627 5.26640 5.34114 5.36847 5.46141 5.48694 5.64993 5.93206 6.00389 6.07563 6.18543 6.59876 6.85524 6.96738 7.74729 8.74568 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002431 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.027483 B =11514.802817 C =12777.591213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.086 0.914 4 C -0.113 4.113 5 C 0.123 3.877 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.583 5.583 9 C 0.526 3.474 10 O -0.538 6.538 11 C 0.499 3.501 12 O -0.521 6.521 13 N -0.621 5.621 14 C 0.052 3.948 15 C -0.067 4.067 16 C -0.224 4.224 17 C 0.112 3.888 18 O -0.223 6.223 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.016 2.984 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.178 4.178 28 C -0.072 4.072 29 C 0.094 3.906 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.428 0.572 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.164 0.836 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 2.387 28.928 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.151 4.151 5 C 0.021 3.979 6 H 0.098 0.902 7 C -0.218 4.218 8 N -0.316 5.316 9 C 0.308 3.692 10 O -0.416 6.416 11 C 0.281 3.719 12 O -0.397 6.397 13 N -0.268 5.268 14 C -0.041 4.041 15 C -0.087 4.087 16 C -0.244 4.244 17 C 0.061 3.939 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.218 4.218 22 N -0.554 5.554 23 Si 0.835 3.165 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.198 4.198 28 C -0.092 4.092 29 C -0.028 4.028 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.267 0.733 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.181 0.819 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.127 2.522 28.447 28.855 hybrid contribution -0.075 -0.402 -0.812 0.909 sum -4.202 2.120 27.635 28.033 Atomic orbital electron populations 1.21676 0.92291 1.02660 1.02920 1.22355 0.97282 0.99151 0.93175 0.89579 1.22841 0.92787 1.01103 0.98377 1.21992 0.98145 1.00628 0.77107 0.90208 1.22126 0.98127 0.98871 1.02627 1.48491 1.12479 1.62920 1.07712 1.19433 0.83928 0.79305 0.86512 1.90736 1.26074 1.47676 1.77109 1.20359 0.84722 0.78628 0.88156 1.90752 1.26601 1.44996 1.77386 1.42814 1.14438 1.65733 1.03788 1.17349 0.96283 1.08440 0.82031 1.20775 0.96840 0.97299 0.93829 1.21076 1.00017 1.09932 0.93385 1.19957 0.94865 0.94789 0.84279 1.83947 1.38671 1.72859 1.17476 1.21749 0.95620 1.38101 0.93576 0.88273 1.26549 1.03363 0.97216 0.94646 1.70165 1.37847 1.43761 1.03653 0.84684 0.75207 0.78969 0.77618 1.18293 1.19491 1.18192 1.20300 0.95496 1.08481 0.95532 1.20759 0.99355 0.98286 0.90806 1.22841 0.81350 0.99463 0.99174 0.90418 0.92589 0.92022 0.89051 0.87366 0.92427 0.88917 0.93398 0.73313 0.85457 0.85945 0.91731 0.85094 0.81882 0.89983 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.31 71.98 0.67 -0.56 16 2 C -0.10 -1.14 3.62 -9.48 -0.03 -1.17 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -0.96 5.97 31.78 0.19 -0.77 16 5 C 0.12 1.80 3.50 45.34 0.16 1.96 16 6 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 7 C -0.16 -2.24 9.06 71.98 0.65 -1.59 16 8 N -0.58 -12.00 3.08 -790.19 -2.44 -14.44 16 9 C 0.53 13.48 7.69 87.23 0.67 14.15 16 10 O -0.54 -15.02 15.37 -3.27 -0.05 -15.07 16 11 C 0.50 14.37 7.59 87.23 0.66 15.04 16 12 O -0.52 -17.12 11.48 -3.36 -0.04 -17.16 16 13 N -0.62 -17.24 5.32 -304.75 -1.62 -18.86 16 14 C 0.05 1.76 6.27 38.25 0.24 2.00 16 15 C -0.07 -2.62 8.65 22.39 0.19 -2.43 16 16 C -0.22 -10.14 9.12 22.37 0.20 -9.94 16 17 C 0.11 5.55 6.65 22.60 0.15 5.70 16 18 O -0.22 -13.29 9.75 -22.51 -0.22 -13.51 16 19 C -0.41 -24.08 9.44 67.92 0.64 -23.44 16 20 H 0.10 5.33 5.29 -2.91 -0.02 5.31 16 21 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 22 N -0.92 -55.82 13.67 21.61 0.30 -55.52 16 23 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 28 C -0.07 -2.36 9.96 22.39 0.22 -2.14 16 29 C 0.09 1.72 5.52 86.78 0.48 2.19 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.09 0.61 8.04 -2.39 -0.02 0.59 16 34 H 0.11 0.50 7.83 -2.38 -0.02 0.48 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.93 6.74 -2.39 -0.02 0.91 16 38 H 0.43 9.70 8.29 -92.70 -0.77 8.93 16 39 H 0.13 4.74 6.43 -2.91 -0.02 4.72 16 40 H 0.12 5.65 5.71 -2.91 -0.02 5.63 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 43 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.08 1.89 6.17 -2.39 -0.01 1.87 16 45 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 Total: -1.00 -73.23 371.21 4.01 -69.22 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.26 Total: 29.21 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.79 Total: -8.72 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -3.76 Total: -88.82 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.31 Total: -45.74 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.23 4.01 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -73.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds