Wall clock time and date at job start Tue Mar 31 2020 17:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88440 * 2 1 4 4 C 1.55153 * 111.00120 * 236.08202 * 2 1 3 5 5 C 1.54312 * 102.86321 * 206.22798 * 4 2 1 6 6 H 1.09007 * 109.77712 * 141.88521 * 5 4 2 7 7 C 1.52998 * 109.98819 * 263.04682 * 5 4 2 8 8 N 1.47021 * 107.27706 * 22.52716 * 5 4 2 9 9 C 1.34777 * 125.65325 * 180.96781 * 8 5 4 10 10 O 1.21365 * 119.99460 * 359.71768 * 9 8 5 11 11 C 1.49313 * 120.00184 * 179.71277 * 9 8 5 12 12 O 1.21388 * 120.00275 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00184 * 179.97438 * 11 9 8 14 14 C 1.39738 * 120.00362 * 175.50090 * 13 11 9 15 15 C 1.38992 * 120.00843 * 35.14088 * 14 13 11 16 16 C 1.37968 * 119.99650 * 180.02562 * 15 14 13 17 17 C 1.38935 * 120.00543 * 0.02562 * 16 15 14 18 18 O 1.35753 * 119.99319 * 179.97438 * 17 16 15 19 19 C 1.34800 * 117.00286 * 5.34327 * 18 17 16 20 20 H 1.07998 * 119.99769 * 354.96920 * 19 18 17 21 21 C 1.38653 * 120.00620 * 174.96201 * 19 18 17 22 22 N 1.31565 * 119.99106 * 359.73127 * 21 19 18 23 23 Si 1.86792 * 120.00475 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47174 * 90.00203 * 23 21 19 25 25 H 1.48499 * 109.47353 * 210.00259 * 23 21 19 26 26 H 1.48505 * 109.47017 * 330.00570 * 23 21 19 27 27 C 1.38934 * 120.01411 * 0.25354 * 17 16 15 28 28 C 1.37970 * 120.00510 * 359.48991 * 27 17 16 29 29 C 1.47423 * 108.70090 * 0.70439 * 8 5 4 30 30 H 1.08998 * 109.46654 * 297.56821 * 1 2 3 31 31 H 1.08996 * 109.47010 * 57.56768 * 1 2 3 32 32 H 1.08995 * 109.47153 * 177.57131 * 1 2 3 33 33 H 1.08999 * 110.72368 * 324.78696 * 4 2 1 34 34 H 1.09004 * 110.72504 * 87.88543 * 4 2 1 35 35 H 1.09001 * 109.47225 * 179.32669 * 7 5 4 36 36 H 1.08997 * 109.47411 * 299.33259 * 7 5 4 37 37 H 1.09000 * 109.46991 * 59.32714 * 7 5 4 38 38 H 0.97003 * 119.99563 * 355.49827 * 13 11 9 39 39 H 1.08008 * 120.00123 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.99879 * 179.97438 * 16 15 14 41 41 H 0.97008 * 119.99269 * 180.02562 * 22 21 19 42 42 H 1.08003 * 119.99837 * 179.74805 * 27 17 16 43 43 H 1.08005 * 120.00148 * 180.23155 * 28 27 17 44 44 H 1.08996 * 110.36800 * 94.93691 * 29 8 5 45 45 H 1.09003 * 110.36640 * 217.15463 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 -1.2020 5 6 3.4691 -1.2691 -0.6958 6 1 3.6699 -2.2827 -1.0429 7 6 4.5550 -0.3178 -1.2024 8 7 3.4272 -1.2429 0.7736 9 6 4.4481 -1.5599 1.5944 10 8 5.5142 -1.9079 1.1303 11 6 4.2677 -1.4828 3.0746 12 8 3.2013 -1.1351 3.5387 13 7 5.2884 -1.8003 3.8954 14 6 5.1508 -1.6385 5.2765 15 6 3.9229 -1.8714 5.8847 16 6 3.7871 -1.7111 7.2483 17 6 4.8776 -1.3164 8.0135 18 8 4.7436 -1.1582 9.3551 19 6 3.5594 -1.5059 9.8971 20 1 2.7433 -1.8132 9.2599 21 6 3.3889 -1.4692 11.2726 22 7 4.3847 -1.1001 12.0491 23 14 1.7481 -1.9517 12.0237 24 1 1.7448 -3.4085 12.3117 25 1 1.5403 -1.1972 13.2857 26 1 0.6546 -1.6332 11.0706 27 6 6.1037 -1.0779 7.4050 28 6 6.2414 -1.2432 6.0422 29 6 2.0853 -0.8063 1.2005 30 1 -0.3632 0.4756 0.9110 31 1 -0.3633 0.5511 -0.8673 32 1 -0.3633 -1.0267 -0.0435 33 1 1.4467 -1.6636 -1.4205 34 1 2.1892 -0.1713 -2.0805 35 1 5.5262 -0.6440 -0.8304 36 1 4.5630 -0.3229 -2.2923 37 1 4.3494 0.6913 -0.8454 38 1 6.1187 -2.1411 3.5273 39 1 3.0751 -2.1778 5.2899 40 1 2.8330 -1.8916 7.7209 41 1 4.2656 -1.0747 13.0115 42 1 6.9501 -0.7672 7.9995 43 1 7.1955 -1.0614 5.5698 44 1 1.4520 -1.6700 1.4029 45 1 2.1560 -0.1730 2.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116116841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:57 Heat of formation + Delta-G solvation = -60.787860 kcal Electronic energy + Delta-G solvation = -27903.648606 eV Core-core repulsion = 23887.296302 eV Total energy + Delta-G solvation = -4016.352304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10974 -39.72421 -38.66764 -37.88963 -36.60306 -34.15465 -33.21467 -32.22480 -32.05700 -30.27004 -28.36792 -27.37925 -26.20670 -25.52859 -24.68131 -22.55300 -21.97724 -21.01340 -20.46391 -19.58133 -18.33088 -17.85443 -17.12992 -16.96423 -16.46541 -16.26219 -15.64165 -14.97583 -14.61979 -14.49775 -14.11126 -14.09474 -13.80361 -13.70808 -13.61830 -13.59416 -13.09616 -12.94016 -12.88665 -12.63542 -12.56944 -12.30055 -12.00262 -11.82099 -11.76268 -11.60821 -11.35745 -11.05147 -11.04368 -11.00681 -10.85866 -10.76691 -10.45892 -9.78655 -9.52357 -9.20432 -9.00697 -8.74502 -8.26426 -7.01589 -6.48575 -4.05857 1.28301 2.10189 2.14870 2.33408 3.11157 3.12992 3.17835 3.23116 3.43449 3.94661 4.08667 4.16078 4.39343 4.45854 4.54520 4.70893 4.96430 4.98196 5.05976 5.07102 5.21601 5.25546 5.31773 5.39955 5.44392 5.53641 5.60341 5.62925 5.67850 5.70946 5.79924 5.88159 5.93556 6.04655 6.08081 6.12034 6.24238 6.64334 6.74824 6.91151 6.97303 7.04523 7.24040 7.37335 7.38178 7.68452 7.72717 7.96373 8.10796 8.96993 9.65564 10.69079 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.002419 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.100143 B =11573.227975 C =12831.788415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.588 5.588 9 C 0.525 3.475 10 O -0.524 6.524 11 C 0.498 3.502 12 O -0.505 6.505 13 N -0.624 5.624 14 C 0.023 3.977 15 C -0.060 4.060 16 C -0.222 4.222 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.178 4.178 28 C -0.085 4.085 29 C 0.098 3.902 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 0.523 -25.262 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.030 3.970 6 H 0.097 0.903 7 C -0.222 4.222 8 N -0.322 5.322 9 C 0.309 3.691 10 O -0.400 6.400 11 C 0.280 3.720 12 O -0.381 6.381 13 N -0.269 5.269 14 C -0.069 4.069 15 C -0.079 4.079 16 C -0.242 4.242 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.198 4.198 28 C -0.105 4.105 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.408 0.684 -24.705 25.104 hybrid contribution -0.413 -0.415 0.155 0.606 sum -4.821 0.268 -24.549 25.020 Atomic orbital electron populations 1.21687 0.93440 1.02329 1.02388 1.22427 0.96511 0.99507 0.94299 0.89659 1.22825 0.94643 1.00514 0.98323 1.21675 0.96216 1.00203 0.78940 0.90285 1.22158 0.99723 0.99290 1.01074 1.48327 1.12637 1.64742 1.06522 1.19834 0.83401 0.78604 0.87305 1.90738 1.25486 1.46486 1.77281 1.19941 0.85219 0.79706 0.87155 1.90721 1.25372 1.45350 1.76668 1.42836 1.17129 1.61760 1.05215 1.17237 0.96332 1.12691 0.80689 1.20834 0.96020 0.97137 0.93957 1.21086 0.99954 1.09808 0.93330 1.19441 0.93048 0.92668 0.85303 1.83965 1.36503 1.71996 1.15155 1.21356 0.88184 1.46334 0.90868 0.88923 1.25308 0.99494 0.96654 0.95055 1.70046 1.31080 1.43445 1.04935 0.85696 0.80106 0.78772 0.78806 1.19832 1.20231 1.19101 1.20002 0.96322 1.09871 0.93581 1.20393 0.97107 0.99791 0.93177 1.22800 0.81718 0.99402 0.98442 0.91878 0.92142 0.92247 0.90266 0.89711 0.90918 0.91480 0.92331 0.75022 0.85662 0.85055 0.91947 0.85851 0.86452 0.90731 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.29 37.16 0.35 -0.46 16 2 C -0.11 -0.75 3.64 -88.47 -0.32 -1.08 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -0.76 5.97 -24.90 -0.15 -0.90 16 5 C 0.13 1.14 3.48 -66.96 -0.23 0.91 16 6 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 7 C -0.16 -1.37 9.07 37.16 0.34 -1.03 16 8 N -0.59 -6.54 3.08 -163.58 -0.50 -7.04 16 9 C 0.53 7.11 7.69 -11.65 -0.09 7.02 16 10 O -0.52 -7.72 15.38 5.48 0.08 -7.63 16 11 C 0.50 7.52 7.69 -11.65 -0.09 7.43 16 12 O -0.51 -8.45 11.20 5.46 0.06 -8.39 16 13 N -0.62 -9.35 5.32 -10.27 -0.05 -9.41 16 14 C 0.02 0.41 6.30 -83.69 -0.53 -0.12 16 15 C -0.06 -1.17 8.69 -39.40 -0.34 -1.51 16 16 C -0.22 -4.89 9.16 -39.42 -0.36 -5.25 16 17 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 18 O -0.17 -4.88 9.75 0.13 0.00 -4.87 16 19 C -0.39 -10.83 9.48 30.89 0.29 -10.53 16 20 H 0.09 2.38 5.19 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 23 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 28 C -0.08 -1.48 9.96 -39.40 -0.39 -1.88 16 29 C 0.10 0.97 5.54 -2.53 -0.01 0.95 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 8.11 -51.93 -0.42 -0.10 16 33 H 0.08 0.42 8.01 -51.93 -0.42 0.00 16 34 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 35 H 0.07 0.77 6.75 -51.93 -0.35 0.42 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.41 5.28 8.30 -40.82 -0.34 4.94 16 39 H 0.13 2.37 6.22 -52.48 -0.33 2.05 16 40 H 0.13 2.90 5.63 -52.49 -0.30 2.60 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 43 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 45 H 0.10 1.23 6.15 -51.93 -0.32 0.91 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -31.70 370.88 -7.46 -39.16 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.08 Total: 7.67 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.29 Total: -6.21 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.20 Total: -40.66 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.15 Total: -20.90 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.70 -7.46 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.623 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds