Wall clock time and date at job start Tue Mar 31 2020 17:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88440 * 2 1 4 4 C 1.55153 * 111.00120 * 236.08202 * 2 1 3 5 5 C 1.54312 * 102.86321 * 206.22798 * 4 2 1 6 6 H 1.09007 * 109.77712 * 141.88521 * 5 4 2 7 7 C 1.52998 * 109.98819 * 263.04682 * 5 4 2 8 8 N 1.47021 * 107.27706 * 22.52716 * 5 4 2 9 9 C 1.34777 * 125.65325 * 180.96781 * 8 5 4 10 10 O 1.21365 * 119.99460 * 359.71768 * 9 8 5 11 11 C 1.49313 * 120.00184 * 179.71277 * 9 8 5 12 12 O 1.21388 * 120.00275 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00184 * 179.97438 * 11 9 8 14 14 C 1.39738 * 120.00362 * 175.50090 * 13 11 9 15 15 C 1.38992 * 120.00843 * 35.14088 * 14 13 11 16 16 C 1.37968 * 119.99650 * 180.02562 * 15 14 13 17 17 C 1.38935 * 120.00543 * 0.02562 * 16 15 14 18 18 O 1.35753 * 119.99319 * 179.97438 * 17 16 15 19 19 C 1.34800 * 117.00286 * 5.34327 * 18 17 16 20 20 H 1.07998 * 119.99769 * 354.96920 * 19 18 17 21 21 C 1.38653 * 120.00620 * 174.96201 * 19 18 17 22 22 N 1.31565 * 119.99106 * 359.73127 * 21 19 18 23 23 Si 1.86792 * 120.00475 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47174 * 90.00203 * 23 21 19 25 25 H 1.48499 * 109.47353 * 210.00259 * 23 21 19 26 26 H 1.48505 * 109.47017 * 330.00570 * 23 21 19 27 27 C 1.38934 * 120.01411 * 0.25354 * 17 16 15 28 28 C 1.37970 * 120.00510 * 359.48991 * 27 17 16 29 29 C 1.47423 * 108.70090 * 0.70439 * 8 5 4 30 30 H 1.08998 * 109.46654 * 297.56821 * 1 2 3 31 31 H 1.08996 * 109.47010 * 57.56768 * 1 2 3 32 32 H 1.08995 * 109.47153 * 177.57131 * 1 2 3 33 33 H 1.08999 * 110.72368 * 324.78696 * 4 2 1 34 34 H 1.09004 * 110.72504 * 87.88543 * 4 2 1 35 35 H 1.09001 * 109.47225 * 179.32669 * 7 5 4 36 36 H 1.08997 * 109.47411 * 299.33259 * 7 5 4 37 37 H 1.09000 * 109.46991 * 59.32714 * 7 5 4 38 38 H 0.97003 * 119.99563 * 355.49827 * 13 11 9 39 39 H 1.08008 * 120.00123 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.99879 * 179.97438 * 16 15 14 41 41 H 0.97008 * 119.99269 * 180.02562 * 22 21 19 42 42 H 1.08003 * 119.99837 * 179.74805 * 27 17 16 43 43 H 1.08005 * 120.00148 * 180.23155 * 28 27 17 44 44 H 1.08996 * 110.36800 * 94.93691 * 29 8 5 45 45 H 1.09003 * 110.36640 * 217.15463 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 -1.2020 5 6 3.4691 -1.2691 -0.6958 6 1 3.6699 -2.2827 -1.0429 7 6 4.5550 -0.3178 -1.2024 8 7 3.4272 -1.2429 0.7736 9 6 4.4481 -1.5599 1.5944 10 8 5.5142 -1.9079 1.1303 11 6 4.2677 -1.4828 3.0746 12 8 3.2013 -1.1351 3.5387 13 7 5.2884 -1.8003 3.8954 14 6 5.1508 -1.6385 5.2765 15 6 3.9229 -1.8714 5.8847 16 6 3.7871 -1.7111 7.2483 17 6 4.8776 -1.3164 8.0135 18 8 4.7436 -1.1582 9.3551 19 6 3.5594 -1.5059 9.8971 20 1 2.7433 -1.8132 9.2599 21 6 3.3889 -1.4692 11.2726 22 7 4.3847 -1.1001 12.0491 23 14 1.7481 -1.9517 12.0237 24 1 1.7448 -3.4085 12.3117 25 1 1.5403 -1.1972 13.2857 26 1 0.6546 -1.6332 11.0706 27 6 6.1037 -1.0779 7.4050 28 6 6.2414 -1.2432 6.0422 29 6 2.0853 -0.8063 1.2005 30 1 -0.3632 0.4756 0.9110 31 1 -0.3633 0.5511 -0.8673 32 1 -0.3633 -1.0267 -0.0435 33 1 1.4467 -1.6636 -1.4205 34 1 2.1892 -0.1713 -2.0805 35 1 5.5262 -0.6440 -0.8304 36 1 4.5630 -0.3229 -2.2923 37 1 4.3494 0.6913 -0.8454 38 1 6.1187 -2.1411 3.5273 39 1 3.0751 -2.1778 5.2899 40 1 2.8330 -1.8916 7.7209 41 1 4.2656 -1.0747 13.0115 42 1 6.9501 -0.7672 7.9995 43 1 7.1955 -1.0614 5.5698 44 1 1.4520 -1.6700 1.4029 45 1 2.1560 -0.1730 2.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116116841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:56 Heat of formation + Delta-G solvation = -81.005631 kcal Electronic energy + Delta-G solvation = -27904.525315 eV Core-core repulsion = 23887.296302 eV Total energy + Delta-G solvation = -4017.229012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.23805 -41.02811 -40.15823 -38.89772 -38.22678 -35.59262 -34.20083 -33.93072 -32.82593 -31.91841 -29.94014 -28.01699 -27.44621 -26.89989 -25.87743 -24.05108 -23.29607 -22.12641 -21.39424 -20.65371 -19.93323 -19.30407 -18.64129 -18.28052 -17.55844 -17.35702 -16.78851 -16.29115 -16.11902 -15.99320 -15.52283 -15.37094 -15.16670 -14.81027 -14.75703 -14.67238 -14.30013 -14.18163 -13.83334 -13.59359 -13.54545 -13.33468 -13.29539 -13.20371 -12.95637 -12.71840 -12.58602 -12.52007 -12.38617 -12.12655 -11.76440 -11.58656 -11.47567 -11.42691 -11.12444 -10.65622 -10.50705 -9.92038 -9.87907 -8.71163 -8.47995 -6.14763 0.03955 0.49866 0.67620 1.14564 1.35996 1.44598 1.53066 2.02713 2.17590 2.36282 2.78397 3.10766 3.18082 3.47792 3.48486 3.62139 3.90231 4.04793 4.07172 4.08537 4.30089 4.36742 4.43968 4.48657 4.53751 4.62793 4.66303 4.79104 4.82169 4.87442 4.91217 5.02951 5.03896 5.06628 5.10846 5.21438 5.25884 5.27732 5.35109 5.37202 5.46232 5.49754 5.65432 5.93896 6.00890 6.08086 6.18783 6.60193 6.85851 6.96746 7.74643 8.74577 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.002419 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.100143 B =11573.227975 C =12831.788415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.114 4.114 5 C 0.123 3.877 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.583 5.583 9 C 0.526 3.474 10 O -0.538 6.538 11 C 0.499 3.501 12 O -0.521 6.521 13 N -0.620 5.620 14 C 0.049 3.951 15 C -0.067 4.067 16 C -0.227 4.227 17 C 0.113 3.887 18 O -0.224 6.224 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.017 2.983 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.254 1.254 27 C -0.180 4.180 28 C -0.071 4.071 29 C 0.093 3.907 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.428 0.572 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.273 0.727 42 H 0.131 0.869 43 H 0.163 0.837 44 H 0.076 0.924 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 0.341 -28.947 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.151 4.151 5 C 0.022 3.978 6 H 0.099 0.901 7 C -0.218 4.218 8 N -0.316 5.316 9 C 0.308 3.692 10 O -0.416 6.416 11 C 0.282 3.718 12 O -0.397 6.397 13 N -0.267 5.267 14 C -0.044 4.044 15 C -0.087 4.087 16 C -0.246 4.246 17 C 0.062 3.938 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.836 3.164 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.178 1.178 27 C -0.199 4.199 28 C -0.091 4.091 29 C -0.029 4.029 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.267 0.733 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.180 0.820 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.384 0.500 -28.489 28.998 hybrid contribution -0.031 -0.350 0.882 0.949 sum -5.414 0.150 -27.608 28.134 Atomic orbital electron populations 1.21676 0.92296 1.02813 1.02767 1.22395 0.97298 0.99088 0.93209 0.89647 1.22840 0.92802 1.01132 0.98356 1.21977 0.98098 1.00627 0.77116 0.90147 1.22120 0.98148 0.98831 1.02656 1.48488 1.12370 1.63051 1.07701 1.19434 0.83916 0.79312 0.86511 1.90739 1.26077 1.47673 1.77139 1.20360 0.84640 0.78707 0.88133 1.90731 1.26070 1.45683 1.77266 1.42781 1.18023 1.62028 1.03875 1.17365 0.95559 1.09316 0.82163 1.20924 0.97305 0.97442 0.92985 1.21099 0.99293 1.09969 0.94289 1.19957 0.94912 0.94398 0.84514 1.83935 1.37050 1.74845 1.17160 1.21805 0.88692 1.46862 0.91668 0.88205 1.26555 1.03698 0.96379 0.95171 1.70180 1.33781 1.46207 1.05296 0.84608 0.75093 0.78736 0.77946 1.18791 1.19471 1.17813 1.20298 0.95437 1.09219 0.94988 1.20770 0.98838 0.97713 0.91787 1.22888 0.81279 0.99528 0.99169 0.92650 0.90537 0.91838 0.88973 0.87445 0.93411 0.88910 0.92495 0.73317 0.84938 0.85955 0.91747 0.85157 0.81961 0.90585 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.29 71.98 0.67 -0.54 16 2 C -0.10 -1.14 3.64 -9.40 -0.03 -1.17 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -0.96 5.97 31.78 0.19 -0.77 16 5 C 0.12 1.80 3.48 45.34 0.16 1.96 16 6 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 7 C -0.16 -2.26 9.07 71.98 0.65 -1.61 16 8 N -0.58 -11.94 3.08 -789.80 -2.43 -14.37 16 9 C 0.53 13.42 7.69 87.23 0.67 14.09 16 10 O -0.54 -14.98 15.38 -3.29 -0.05 -15.04 16 11 C 0.50 14.31 7.69 87.23 0.67 14.98 16 12 O -0.52 -16.93 11.20 -3.36 -0.04 -16.97 16 13 N -0.62 -17.18 5.32 -304.76 -1.62 -18.80 16 14 C 0.05 1.66 6.30 38.24 0.24 1.90 16 15 C -0.07 -2.59 8.69 22.39 0.19 -2.39 16 16 C -0.23 -10.25 9.16 22.37 0.20 -10.04 16 17 C 0.11 5.61 6.65 22.60 0.15 5.76 16 18 O -0.22 -13.32 9.75 -22.47 -0.22 -13.54 16 19 C -0.41 -24.08 9.48 67.92 0.64 -23.44 16 20 H 0.10 5.38 5.19 -2.91 -0.02 5.36 16 21 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 22 N -0.92 -55.83 13.67 21.61 0.30 -55.53 16 23 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 27 C -0.18 -7.37 9.98 22.37 0.22 -7.15 16 28 C -0.07 -2.34 9.96 22.39 0.22 -2.12 16 29 C 0.09 1.69 5.54 86.86 0.48 2.17 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.52 8.11 -2.39 -0.02 0.50 16 33 H 0.09 0.60 8.01 -2.39 -0.02 0.58 16 34 H 0.11 0.50 7.84 -2.38 -0.02 0.48 16 35 H 0.05 0.93 6.75 -2.39 -0.02 0.92 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.43 9.72 8.30 -92.71 -0.77 8.95 16 39 H 0.13 4.95 6.22 -2.91 -0.02 4.93 16 40 H 0.12 5.64 5.63 -2.91 -0.02 5.63 16 41 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 42 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 43 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 44 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 45 H 0.08 1.88 6.15 -2.39 -0.01 1.87 16 Total: -1.00 -73.08 370.88 4.03 -69.05 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.26 Total: 29.37 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.80 Total: -9.05 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -3.76 Total: -88.71 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.31 Total: -45.54 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.08 4.03 -69.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116116841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.957 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds