Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.64331 * 2 1 4 4 C 1.55164 * 110.87137 * 236.74830 * 2 1 3 5 5 C 1.55129 * 101.48371 * 205.89959 * 4 2 1 6 6 N 1.47423 * 104.72401 * 37.30145 * 5 4 2 7 7 C 1.34780 * 125.65258 * 155.81649 * 6 5 4 8 8 O 1.21360 * 119.99730 * 179.68279 * 7 6 5 9 9 C 1.49314 * 119.99638 * 359.69004 * 7 6 5 10 10 O 1.21389 * 120.00102 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99638 * 180.02562 * 9 7 6 12 12 C 1.39745 * 119.99799 * 175.49380 * 11 9 7 13 13 C 1.39000 * 120.00783 * 35.13882 * 12 11 9 14 14 C 1.37962 * 119.99330 * 179.71900 * 13 12 11 15 15 C 1.38941 * 120.00831 * 0.28543 * 14 13 12 16 16 O 1.35756 * 119.99267 * 180.02562 * 15 14 13 17 17 C 1.34798 * 117.00099 * 354.65912 * 16 15 14 18 18 H 1.07996 * 120.00173 * 5.03583 * 17 16 15 19 19 C 1.38653 * 120.00056 * 185.03283 * 17 16 15 20 20 N 1.31566 * 119.99661 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47286 * 90.00449 * 21 19 17 23 23 H 1.48509 * 109.46912 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.47293 * 329.99919 * 21 19 17 25 25 C 1.38934 * 120.01069 * 359.97438 * 15 14 13 26 26 C 1.37962 * 120.00973 * 0.02562 * 25 15 14 27 27 C 1.47026 * 108.70064 * 335.54570 * 6 5 4 28 28 H 1.09001 * 109.88226 * 120.86592 * 27 6 5 29 29 C 1.53000 * 109.88705 * 241.87233 * 27 6 5 30 30 H 1.08998 * 109.46906 * 296.86260 * 1 2 3 31 31 H 1.09010 * 109.47062 * 56.86018 * 1 2 3 32 32 H 1.09000 * 109.47502 * 176.86113 * 1 2 3 33 33 H 1.08997 * 111.00490 * 324.13897 * 4 2 1 34 34 H 1.08996 * 111.00292 * 87.95541 * 4 2 1 35 35 H 1.08992 * 110.50027 * 278.45232 * 5 4 2 36 36 H 1.09005 * 110.34102 * 156.05914 * 5 4 2 37 37 H 0.96991 * 120.00001 * 355.49707 * 11 9 7 38 38 H 1.08002 * 120.00314 * 0.02562 * 13 12 11 39 39 H 1.08003 * 119.99781 * 180.25814 * 14 13 12 40 40 H 0.97007 * 119.99407 * 180.02562 * 20 19 17 41 41 H 1.08004 * 119.99163 * 180.02562 * 25 15 14 42 42 H 1.08000 * 120.00630 * 180.02562 * 26 25 15 43 43 H 1.09005 * 109.46789 * 58.54748 * 29 27 6 44 44 H 1.08992 * 109.47375 * 178.54707 * 29 27 6 45 45 H 1.08996 * 109.46968 * 298.55125 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0828 -0.7950 -1.2124 5 6 3.4706 -1.2414 -0.6822 6 7 3.2470 -1.5463 0.7427 7 6 3.9956 -2.3769 1.4952 8 8 3.7211 -2.5492 2.6647 9 6 5.1626 -3.0847 0.8900 10 8 5.4369 -2.9125 -0.2799 11 7 5.9109 -3.9158 1.6423 12 6 6.9445 -4.6502 1.0548 13 6 7.6900 -4.0964 0.0206 14 6 8.7141 -4.8195 -0.5553 15 6 8.9965 -6.1034 -0.1056 16 8 10.0047 -6.8145 -0.6721 17 6 10.6194 -6.2626 -1.7373 18 1 10.3595 -5.2630 -2.0528 19 6 11.5854 -6.9784 -2.4280 20 7 11.9016 -8.1964 -2.0439 21 14 12.4368 -6.2139 -3.9045 22 1 13.6517 -5.4881 -3.4545 23 1 12.8242 -7.2823 -4.8605 24 1 11.5114 -5.2638 -4.5724 25 6 8.2480 -6.6593 0.9245 26 6 7.2238 -5.9367 1.5008 27 6 2.0759 -0.7891 1.2086 28 1 1.3150 -1.4752 1.5807 29 6 2.4902 0.1794 2.3183 30 1 -0.3633 0.4644 0.9168 31 1 -0.3634 0.5619 -0.8606 32 1 -0.3634 -1.0261 -0.0563 33 1 1.4514 -1.6547 -1.4366 34 1 2.1880 -0.1518 -2.0861 35 1 4.1969 -0.4357 -0.7884 36 1 3.8101 -2.1316 -1.2118 37 1 5.7319 -4.0040 2.5915 38 1 7.4708 -3.0982 -0.3288 39 1 9.2961 -4.3877 -1.3561 40 1 12.5778 -8.6969 -2.5269 41 1 8.4681 -7.6572 1.2741 42 1 6.6422 -6.3686 2.3018 43 1 3.2564 0.8570 1.9416 44 1 1.6227 0.7551 2.6406 45 1 2.8867 -0.3840 3.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116224851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = -60.751643 kcal Electronic energy + Delta-G solvation = -27847.844390 eV Core-core repulsion = 23831.493657 eV Total energy + Delta-G solvation = -4016.350734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10310 -39.73419 -38.67801 -37.87727 -36.60915 -34.19639 -33.17083 -32.22248 -31.69183 -30.27327 -28.88869 -28.19539 -25.63910 -24.99888 -24.29395 -22.74652 -22.23441 -21.18332 -20.44041 -19.63177 -18.24711 -17.79631 -17.27801 -16.98436 -16.48708 -16.18127 -15.56023 -14.79127 -14.58107 -14.50250 -14.37913 -14.04446 -13.91684 -13.73649 -13.56680 -13.53634 -13.24123 -12.97619 -12.93434 -12.62737 -12.45485 -12.13574 -11.96095 -11.85348 -11.80019 -11.58420 -11.42790 -11.20000 -11.05555 -10.94473 -10.90624 -10.77984 -10.46447 -9.73082 -9.53176 -9.20227 -9.00619 -8.75416 -8.26485 -7.01409 -6.48358 -4.05666 1.28778 2.09911 2.14955 2.34319 3.11181 3.13220 3.18074 3.23107 3.44453 3.94867 4.04664 4.19030 4.38719 4.39570 4.53860 4.85886 4.91271 4.96977 5.00844 5.05955 5.16239 5.21925 5.26125 5.31692 5.52076 5.57542 5.60779 5.62761 5.66806 5.69746 5.74582 5.84006 5.95045 6.00906 6.07586 6.12024 6.24289 6.64436 6.74991 6.91335 6.97503 7.04919 7.24107 7.37577 7.38263 7.68602 7.73016 7.96510 8.11055 8.97175 9.65674 10.69237 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002303 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.924392 B =12156.090933 C =13145.252731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.133 4.133 5 C 0.094 3.906 6 N -0.588 5.588 7 C 0.525 3.475 8 O -0.524 6.524 9 C 0.498 3.502 10 O -0.505 6.505 11 N -0.624 5.624 12 C 0.023 3.977 13 C -0.059 4.059 14 C -0.222 4.222 15 C 0.150 3.850 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.178 4.178 26 C -0.085 4.085 27 C 0.136 3.864 28 H 0.081 0.919 29 C -0.164 4.164 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.271 0.729 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.062 16.117 4.425 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.171 4.171 5 C -0.028 4.028 6 N -0.322 5.322 7 C 0.308 3.692 8 O -0.400 6.400 9 C 0.280 3.720 10 O -0.381 6.381 11 N -0.270 5.270 12 C -0.069 4.069 13 C -0.079 4.079 14 C -0.242 4.242 15 C 0.095 3.905 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.198 4.198 26 C -0.105 4.105 27 C 0.033 3.967 28 H 0.099 0.901 29 C -0.222 4.222 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.717 15.676 4.240 25.544 hybrid contribution 0.340 0.388 -0.274 0.584 sum -19.378 16.063 3.967 25.480 Atomic orbital electron populations 1.21758 0.93591 1.02356 1.02216 1.22328 0.96465 0.99458 0.93841 0.89399 1.22996 0.95985 1.00447 0.97641 1.22751 0.96991 1.03033 0.79988 1.48344 1.29005 1.42576 1.12321 1.19836 0.83668 0.79820 0.85849 1.90738 1.70407 1.63145 1.15738 1.19949 0.83724 0.81690 0.86648 1.90721 1.69371 1.62124 1.15899 1.42840 1.30626 1.41088 1.12403 1.17244 0.94307 0.92754 1.02643 1.20829 0.92918 0.99453 0.94728 1.21088 1.01971 0.95777 1.05346 1.19442 0.88072 0.90634 0.92320 1.83965 1.39355 1.42992 1.41309 1.21355 1.19401 1.00742 1.05226 0.88921 1.25311 0.96848 0.95530 0.98839 1.70045 1.30222 1.09756 1.39471 0.85699 0.79445 0.78561 0.79683 1.19840 1.20227 1.19098 1.20003 0.98628 1.00983 1.00157 1.20401 0.98053 0.91705 1.00303 1.21781 0.87063 0.92972 0.94882 0.90120 1.22155 1.01896 0.99092 0.99062 0.92237 0.91917 0.92260 0.90331 0.89535 0.90813 0.87663 0.75016 0.85672 0.85057 0.91951 0.85852 0.86457 0.92350 0.91445 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.15 37.16 0.34 -0.35 16 2 C -0.10 -0.64 3.06 -88.78 -0.27 -0.91 16 3 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 4 C -0.13 -0.90 6.55 -24.46 -0.16 -1.06 16 5 C 0.09 0.92 6.08 -2.41 -0.01 0.90 16 6 N -0.59 -6.55 3.06 -163.43 -0.50 -7.05 16 7 C 0.52 7.13 7.70 -11.65 -0.09 7.04 16 8 O -0.52 -7.76 15.52 5.49 0.09 -7.67 16 9 C 0.50 7.53 7.69 -11.65 -0.09 7.44 16 10 O -0.51 -8.46 11.20 5.46 0.06 -8.40 16 11 N -0.62 -9.36 5.32 -10.27 -0.05 -9.42 16 12 C 0.02 0.41 6.30 -83.69 -0.53 -0.12 16 13 C -0.06 -1.17 8.68 -39.40 -0.34 -1.51 16 14 C -0.22 -4.89 9.16 -39.42 -0.36 -5.25 16 15 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 16 O -0.17 -4.88 9.75 0.12 0.00 -4.88 16 17 C -0.39 -10.83 9.48 30.89 0.29 -10.53 16 18 H 0.09 2.38 5.19 -52.49 -0.27 2.11 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 21 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 26 C -0.08 -1.48 9.96 -39.40 -0.39 -1.88 16 27 C 0.14 1.19 3.05 -66.95 -0.20 0.98 16 28 H 0.08 0.74 7.83 -51.93 -0.41 0.33 16 29 C -0.16 -1.37 9.10 37.16 0.34 -1.04 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 32 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.22 6.14 -51.93 -0.32 0.90 16 37 H 0.41 5.28 8.30 -40.82 -0.34 4.94 16 38 H 0.13 2.37 6.23 -52.49 -0.33 2.04 16 39 H 0.13 2.89 5.63 -52.48 -0.30 2.60 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.75 6.88 -51.93 -0.36 0.40 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -31.77 370.96 -7.39 -39.16 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.08 Total: 7.56 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.23 Total: -6.04 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.20 Total: -40.68 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.15 Total: -20.95 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.77 -7.39 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.593 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds