Wall clock time and date at job start Tue Mar 31 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.64331 * 2 1 4 4 C 1.55164 * 110.87137 * 236.74830 * 2 1 3 5 5 C 1.55129 * 101.48371 * 205.89959 * 4 2 1 6 6 N 1.47423 * 104.72401 * 37.30145 * 5 4 2 7 7 C 1.34780 * 125.65258 * 155.81649 * 6 5 4 8 8 O 1.21360 * 119.99730 * 179.68279 * 7 6 5 9 9 C 1.49314 * 119.99638 * 359.69004 * 7 6 5 10 10 O 1.21389 * 120.00102 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99638 * 180.02562 * 9 7 6 12 12 C 1.39745 * 119.99799 * 175.49380 * 11 9 7 13 13 C 1.39000 * 120.00783 * 35.13882 * 12 11 9 14 14 C 1.37962 * 119.99330 * 179.71900 * 13 12 11 15 15 C 1.38941 * 120.00831 * 0.28543 * 14 13 12 16 16 O 1.35756 * 119.99267 * 180.02562 * 15 14 13 17 17 C 1.34798 * 117.00099 * 354.65912 * 16 15 14 18 18 H 1.07996 * 120.00173 * 5.03583 * 17 16 15 19 19 C 1.38653 * 120.00056 * 185.03283 * 17 16 15 20 20 N 1.31566 * 119.99661 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47286 * 90.00449 * 21 19 17 23 23 H 1.48509 * 109.46912 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.47293 * 329.99919 * 21 19 17 25 25 C 1.38934 * 120.01069 * 359.97438 * 15 14 13 26 26 C 1.37962 * 120.00973 * 0.02562 * 25 15 14 27 27 C 1.47026 * 108.70064 * 335.54570 * 6 5 4 28 28 H 1.09001 * 109.88226 * 120.86592 * 27 6 5 29 29 C 1.53000 * 109.88705 * 241.87233 * 27 6 5 30 30 H 1.08998 * 109.46906 * 296.86260 * 1 2 3 31 31 H 1.09010 * 109.47062 * 56.86018 * 1 2 3 32 32 H 1.09000 * 109.47502 * 176.86113 * 1 2 3 33 33 H 1.08997 * 111.00490 * 324.13897 * 4 2 1 34 34 H 1.08996 * 111.00292 * 87.95541 * 4 2 1 35 35 H 1.08992 * 110.50027 * 278.45232 * 5 4 2 36 36 H 1.09005 * 110.34102 * 156.05914 * 5 4 2 37 37 H 0.96991 * 120.00001 * 355.49707 * 11 9 7 38 38 H 1.08002 * 120.00314 * 0.02562 * 13 12 11 39 39 H 1.08003 * 119.99781 * 180.25814 * 14 13 12 40 40 H 0.97007 * 119.99407 * 180.02562 * 20 19 17 41 41 H 1.08004 * 119.99163 * 180.02562 * 25 15 14 42 42 H 1.08000 * 120.00630 * 180.02562 * 26 25 15 43 43 H 1.09005 * 109.46789 * 58.54748 * 29 27 6 44 44 H 1.08992 * 109.47375 * 178.54707 * 29 27 6 45 45 H 1.08996 * 109.46968 * 298.55125 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0828 -0.7950 -1.2124 5 6 3.4706 -1.2414 -0.6822 6 7 3.2470 -1.5463 0.7427 7 6 3.9956 -2.3769 1.4952 8 8 3.7211 -2.5492 2.6647 9 6 5.1626 -3.0847 0.8900 10 8 5.4369 -2.9125 -0.2799 11 7 5.9109 -3.9158 1.6423 12 6 6.9445 -4.6502 1.0548 13 6 7.6900 -4.0964 0.0206 14 6 8.7141 -4.8195 -0.5553 15 6 8.9965 -6.1034 -0.1056 16 8 10.0047 -6.8145 -0.6721 17 6 10.6194 -6.2626 -1.7373 18 1 10.3595 -5.2630 -2.0528 19 6 11.5854 -6.9784 -2.4280 20 7 11.9016 -8.1964 -2.0439 21 14 12.4368 -6.2139 -3.9045 22 1 13.6517 -5.4881 -3.4545 23 1 12.8242 -7.2823 -4.8605 24 1 11.5114 -5.2638 -4.5724 25 6 8.2480 -6.6593 0.9245 26 6 7.2238 -5.9367 1.5008 27 6 2.0759 -0.7891 1.2086 28 1 1.3150 -1.4752 1.5807 29 6 2.4902 0.1794 2.3183 30 1 -0.3633 0.4644 0.9168 31 1 -0.3634 0.5619 -0.8606 32 1 -0.3634 -1.0261 -0.0563 33 1 1.4514 -1.6547 -1.4366 34 1 2.1880 -0.1518 -2.0861 35 1 4.1969 -0.4357 -0.7884 36 1 3.8101 -2.1316 -1.2118 37 1 5.7319 -4.0040 2.5915 38 1 7.4708 -3.0982 -0.3288 39 1 9.2961 -4.3877 -1.3561 40 1 12.5778 -8.6969 -2.5269 41 1 8.4681 -7.6572 1.2741 42 1 6.6422 -6.3686 2.3018 43 1 3.2564 0.8570 1.9416 44 1 1.6227 0.7551 2.6406 45 1 2.8867 -0.3840 3.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116224851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:16 Heat of formation + Delta-G solvation = -81.007119 kcal Electronic energy + Delta-G solvation = -27848.722733 eV Core-core repulsion = 23831.493657 eV Total energy + Delta-G solvation = -4017.229077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23174 -41.02862 -40.16620 -38.89085 -38.22895 -35.61109 -34.20444 -33.96016 -32.37067 -31.92077 -30.03738 -29.29330 -27.43221 -26.18963 -25.06622 -24.03396 -23.57898 -22.46305 -21.34068 -20.73428 -19.92054 -19.23681 -18.55190 -18.39887 -17.61465 -17.37581 -16.76189 -16.28269 -16.01599 -15.91116 -15.56625 -15.29664 -15.07654 -14.99184 -14.72364 -14.59766 -14.41219 -14.21750 -13.95653 -13.59790 -13.48844 -13.37745 -13.26761 -13.13383 -12.75322 -12.69584 -12.66406 -12.53883 -12.45729 -12.13001 -11.81404 -11.57598 -11.49288 -11.39241 -11.14363 -10.66155 -10.51177 -9.91422 -9.87933 -8.70911 -8.47749 -6.14527 0.04336 0.50122 0.67409 1.14983 1.36056 1.44587 1.53242 2.02841 2.17665 2.37267 2.78479 3.11716 3.17464 3.48084 3.52631 3.56962 3.84605 4.04982 4.07367 4.18768 4.26489 4.35424 4.44194 4.52817 4.56096 4.59418 4.63248 4.64755 4.84211 4.90779 4.97155 5.04209 5.05397 5.08224 5.12105 5.14066 5.25253 5.28458 5.32778 5.36336 5.46105 5.49877 5.65598 5.94209 6.01036 6.08470 6.19207 6.60388 6.86061 6.96915 7.74815 8.74702 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002303 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.924392 B =12156.090933 C =13145.252731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.088 3.912 6 N -0.583 5.583 7 C 0.525 3.475 8 O -0.539 6.539 9 C 0.500 3.500 10 O -0.521 6.521 11 N -0.620 5.620 12 C 0.049 3.951 13 C -0.066 4.066 14 C -0.227 4.227 15 C 0.113 3.887 16 O -0.224 6.224 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.021 4.021 20 N -0.917 5.917 21 Si 1.017 2.983 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.180 4.180 26 C -0.072 4.072 27 C 0.128 3.872 28 H 0.077 0.923 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.428 0.572 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.273 0.727 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.769 18.689 4.596 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.119 0.881 4 C -0.162 4.162 5 C -0.033 4.033 6 N -0.316 5.316 7 C 0.308 3.692 8 O -0.418 6.418 9 C 0.282 3.718 10 O -0.397 6.397 11 N -0.267 5.267 12 C -0.044 4.044 13 C -0.086 4.086 14 C -0.247 4.247 15 C 0.062 3.938 16 O -0.130 6.130 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.554 5.554 21 Si 0.836 3.164 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.199 4.199 26 C -0.091 4.091 27 C 0.026 3.974 28 H 0.095 0.905 29 C -0.217 4.217 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.267 0.733 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.180 0.820 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.498 18.305 4.443 29.342 hybrid contribution 0.842 -0.236 -0.131 0.884 sum -21.656 18.069 4.312 28.532 Atomic orbital electron populations 1.21753 0.92253 1.02433 1.03221 1.22329 0.97393 0.99421 0.91929 0.88144 1.22996 0.93842 1.00904 0.98502 1.22851 0.99135 1.02261 0.79077 1.48514 1.28848 1.41464 1.12818 1.19449 0.83534 0.80459 0.85780 1.90737 1.70808 1.64031 1.16182 1.20348 0.83956 0.81080 0.86398 1.90729 1.69831 1.62419 1.16731 1.42784 1.29906 1.40849 1.13186 1.17370 0.93449 0.92763 1.00814 1.20920 0.92584 0.99685 0.95423 1.21103 1.02614 0.95505 1.05428 1.19960 0.88648 0.91527 0.93667 1.83936 1.41724 1.44642 1.42685 1.21801 1.20026 1.01366 1.05789 0.88205 1.26561 0.97371 0.96004 1.01932 1.70179 1.31879 1.11699 1.41679 0.84609 0.78372 0.77882 0.75510 1.18732 1.19500 1.17864 1.20297 0.98715 1.01671 0.99250 1.20776 0.96854 0.91038 1.00451 1.22066 0.85973 0.93053 0.96302 0.90459 1.22113 1.02833 0.98809 0.97947 0.91509 0.90642 0.92716 0.90328 0.87465 0.90422 0.89741 0.73318 0.84913 0.85942 0.91759 0.85168 0.81985 0.92273 0.89085 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.15 71.98 0.66 -0.23 16 2 C -0.09 -0.85 3.06 -9.60 -0.03 -0.88 16 3 H 0.10 0.74 7.85 -2.39 -0.02 0.72 16 4 C -0.12 -1.34 6.55 32.07 0.21 -1.13 16 5 C 0.09 1.56 6.08 86.93 0.53 2.09 16 6 N -0.58 -12.00 3.06 -789.33 -2.42 -14.42 16 7 C 0.53 13.45 7.70 87.23 0.67 14.13 16 8 O -0.54 -15.14 15.52 -3.28 -0.05 -15.19 16 9 C 0.50 14.29 7.69 87.23 0.67 14.96 16 10 O -0.52 -16.83 11.20 -3.37 -0.04 -16.87 16 11 N -0.62 -17.16 5.32 -304.74 -1.62 -18.78 16 12 C 0.05 1.66 6.30 38.24 0.24 1.90 16 13 C -0.07 -2.56 8.68 22.39 0.19 -2.37 16 14 C -0.23 -10.23 9.16 22.37 0.20 -10.03 16 15 C 0.11 5.59 6.65 22.61 0.15 5.74 16 16 O -0.22 -13.31 9.75 -22.49 -0.22 -13.53 16 17 C -0.41 -24.04 9.48 67.92 0.64 -23.40 16 18 H 0.10 5.38 5.19 -2.91 -0.02 5.36 16 19 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 20 N -0.92 -55.80 13.67 21.61 0.30 -55.50 16 21 Si 1.02 42.88 29.55 68.60 2.03 44.91 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 25 C -0.18 -7.36 9.98 22.37 0.22 -7.14 16 26 C -0.07 -2.34 9.96 22.39 0.22 -2.12 16 27 C 0.13 1.94 3.05 45.34 0.14 2.08 16 28 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 29 C -0.16 -2.31 9.10 71.98 0.66 -1.65 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.05 0.42 8.11 -2.39 -0.02 0.40 16 33 H 0.08 0.87 8.03 -2.39 -0.02 0.85 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.88 6.14 -2.38 -0.01 1.87 16 37 H 0.43 9.71 8.30 -92.71 -0.77 8.94 16 38 H 0.13 4.93 6.23 -2.91 -0.02 4.92 16 39 H 0.12 5.64 5.63 -2.91 -0.02 5.62 16 40 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 41 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 42 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.93 6.88 -2.39 -0.02 0.92 16 Total: -1.00 -73.01 370.96 4.09 -68.92 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.26 Total: 29.21 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.85 Total: -8.75 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.74 Total: -88.70 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.31 Total: -45.59 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.01 4.09 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.083 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds