Wall clock time and date at job start Tue Mar 31 2020 17:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87090 * 2 1 4 4 C 1.54324 * 109.87847 * 238.82502 * 2 1 3 5 5 H 1.09000 * 110.72642 * 336.93435 * 4 2 1 6 6 C 1.53004 * 110.71819 * 100.02561 * 4 2 1 7 7 C 1.55154 * 102.94199 * 218.38794 * 4 2 1 8 8 C 1.54689 * 101.67673 * 35.34023 * 7 4 2 9 9 N 1.47023 * 109.88344 * 121.02228 * 2 1 3 10 10 C 1.34775 * 125.64311 * 298.31643 * 9 2 1 11 11 O 1.21366 * 120.00646 * 0.02562 * 10 9 2 12 12 C 1.49318 * 119.99869 * 180.02562 * 10 9 2 13 13 O 1.21393 * 119.99709 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00256 * 180.02562 * 12 10 9 15 15 C 1.39743 * 119.99923 * 174.54515 * 14 12 10 16 16 C 1.39002 * 120.00324 * 145.27364 * 15 14 12 17 17 C 1.37963 * 119.99162 * 179.97438 * 16 15 14 18 18 C 1.38937 * 120.01050 * 359.97438 * 17 16 15 19 19 O 1.35757 * 119.99658 * 179.97438 * 18 17 16 20 20 C 1.34798 * 116.99486 * 5.60986 * 19 18 17 21 21 H 1.07997 * 120.00475 * 5.35420 * 20 19 18 22 22 C 1.38659 * 119.99722 * 185.35393 * 20 19 18 23 23 N 1.31554 * 120.00091 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99857 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.46832 * 90.00064 * 24 22 20 26 26 H 1.48501 * 109.46945 * 210.00343 * 24 22 20 27 27 H 1.48503 * 109.47093 * 329.99922 * 24 22 20 28 28 C 1.38938 * 120.01224 * 0.02562 * 18 17 16 29 29 C 1.37977 * 120.00668 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.46937 * 300.43249 * 1 2 3 31 31 H 1.08995 * 109.47350 * 60.43603 * 1 2 3 32 32 H 1.09005 * 109.47352 * 180.43761 * 1 2 3 33 33 H 1.09004 * 109.47018 * 60.00146 * 6 4 2 34 34 H 1.09003 * 109.47276 * 179.97438 * 6 4 2 35 35 H 1.08995 * 109.47242 * 300.00118 * 6 4 2 36 36 H 1.09002 * 111.00040 * 153.57875 * 7 4 2 37 37 H 1.08996 * 111.00660 * 277.39018 * 7 4 2 38 38 H 1.09006 * 110.38930 * 204.36518 * 8 7 4 39 39 H 1.08994 * 110.24054 * 82.11231 * 8 7 4 40 40 H 0.96997 * 119.99503 * 354.55030 * 14 12 10 41 41 H 1.08001 * 119.99895 * 0.02562 * 16 15 14 42 42 H 1.07997 * 119.99433 * 179.72284 * 17 16 15 43 43 H 0.96998 * 120.00414 * 179.97438 * 23 22 20 44 44 H 1.07998 * 119.99785 * 179.97438 * 28 18 17 45 45 H 1.08002 * 120.00307 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2417 5 1 1.3039 -1.4459 -1.6182 6 6 2.4731 0.2348 -2.3342 7 6 3.2875 -1.5152 -0.6904 8 6 2.8191 -1.8754 0.7392 9 7 2.0301 -0.7125 1.1848 10 6 1.8086 -0.3579 2.4661 11 8 1.1448 0.6265 2.7174 12 6 2.3800 -1.1764 3.5766 13 8 3.0435 -2.1613 3.3254 14 7 2.1581 -0.8221 4.8580 15 6 2.5948 -1.6484 5.8969 16 6 3.0453 -1.0893 7.0872 17 6 3.4758 -1.9053 8.1129 18 6 3.4586 -3.2857 7.9566 19 8 3.8828 -4.0884 8.9660 20 6 4.1975 -3.4903 10.1323 21 1 4.0254 -2.4318 10.2601 22 6 4.7422 -4.2341 11.1680 23 7 5.0489 -3.6506 12.3064 24 14 5.0392 -6.0651 10.9471 25 1 6.4040 -6.2831 10.4040 26 1 4.9135 -6.7488 12.2594 27 1 4.0362 -6.6189 10.0024 28 6 3.0084 -3.8449 6.7671 29 6 2.5787 -3.0294 5.7404 30 1 -0.3633 0.5205 0.8861 31 1 -0.3634 0.5070 -0.8938 32 1 -0.3634 -1.0277 0.0078 33 1 3.2630 0.8834 -1.9553 34 1 2.8402 -0.3164 -3.2000 35 1 1.6147 0.8400 -2.6256 36 1 3.4850 -2.4128 -1.2765 37 1 4.1655 -0.8700 -0.6600 38 1 3.6777 -2.0246 1.3939 39 1 2.1971 -2.7702 0.7180 40 1 1.6954 0.0063 5.0589 41 1 3.0575 -0.0163 7.2091 42 1 3.8300 -1.4708 9.0360 43 1 5.4296 -4.1710 13.0311 44 1 2.9955 -4.9180 6.6457 45 1 2.2283 -3.4641 4.8159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116224852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:21 Heat of formation + Delta-G solvation = -60.352767 kcal Electronic energy + Delta-G solvation = -27791.823669 eV Core-core repulsion = 23775.490232 eV Total energy + Delta-G solvation = -4016.333437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15862 -39.81778 -38.83987 -37.93559 -36.75923 -34.28120 -33.21579 -32.37588 -31.74579 -30.39426 -28.96712 -28.36901 -25.72107 -24.97906 -24.27325 -22.68116 -22.41566 -21.18690 -20.47484 -19.72043 -18.08555 -17.87323 -17.45630 -17.15651 -16.50662 -16.28295 -15.68301 -14.89712 -14.75348 -14.41554 -14.40367 -13.99648 -13.97269 -13.79328 -13.76217 -13.59651 -13.23981 -13.00937 -12.87489 -12.49386 -12.40511 -12.31111 -12.17937 -12.02522 -11.95019 -11.76698 -11.60948 -11.24153 -10.98640 -10.98582 -10.93844 -10.77794 -10.21359 -9.84673 -9.55374 -9.34190 -9.04770 -8.82742 -8.37354 -7.14871 -6.46287 -4.11820 1.21484 2.02286 2.05325 2.24076 3.15515 3.20970 3.24593 3.37604 3.39255 4.00622 4.16066 4.20585 4.33865 4.35552 4.43294 4.82143 4.82976 4.88455 4.94259 4.97910 5.04527 5.13090 5.23136 5.28974 5.43371 5.48937 5.54356 5.57873 5.59708 5.64708 5.71222 5.81086 5.91598 5.95456 5.99747 6.02617 6.09318 6.55087 6.66683 6.74464 6.92522 7.00484 7.15637 7.31962 7.48716 7.65674 7.72379 7.95228 8.04717 8.88572 9.50105 10.60977 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.758281 B =13043.009831 C =13594.118479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.081 0.919 4 C -0.102 4.102 5 H 0.088 0.912 6 C -0.142 4.142 7 C -0.133 4.133 8 C 0.095 3.905 9 N -0.588 5.588 10 C 0.525 3.475 11 O -0.522 6.522 12 C 0.500 3.500 13 O -0.505 6.505 14 N -0.627 5.627 15 C 0.036 3.964 16 C -0.083 4.083 17 C -0.206 4.206 18 C 0.155 3.845 19 O -0.213 6.213 20 C -0.390 4.390 21 H 0.107 0.893 22 C 0.064 3.936 23 N -0.876 5.876 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.177 4.177 29 C -0.065 4.065 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.415 0.585 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.280 0.720 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 6.351 -26.913 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.121 4.121 5 H 0.106 0.894 6 C -0.199 4.199 7 C -0.171 4.171 8 C -0.027 4.027 9 N -0.322 5.322 10 C 0.308 3.692 11 O -0.399 6.399 12 C 0.282 3.718 13 O -0.380 6.380 14 N -0.272 5.272 15 C -0.056 4.056 16 C -0.104 4.104 17 C -0.225 4.225 18 C 0.102 3.898 19 O -0.117 6.117 20 C -0.465 4.465 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.183 1.183 28 C -0.197 4.197 29 C -0.085 4.085 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.251 0.749 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.136 5.926 -26.630 27.963 hybrid contribution -0.018 -0.167 0.253 0.304 sum -6.153 5.759 -26.377 27.690 Atomic orbital electron populations 1.22156 0.94340 1.02542 1.03171 1.21786 0.94896 0.96455 0.83570 0.90101 1.22328 0.97943 0.97666 0.94127 0.89353 1.21764 1.01593 0.98737 0.97848 1.22924 0.97706 1.01122 0.95350 1.22649 0.96742 0.87754 0.95547 1.48339 1.50955 1.28764 1.04161 1.19802 0.81432 0.85207 0.82779 1.90749 1.39080 1.26763 1.83274 1.19956 0.81826 0.86064 0.84003 1.90737 1.37357 1.26738 1.83208 1.42900 1.55860 1.24730 1.03741 1.17266 1.09620 0.89828 0.88894 1.20571 0.98336 0.99007 0.92437 1.21111 1.07594 0.93020 1.00811 1.19186 0.92845 0.89606 0.88116 1.83588 1.73206 1.35103 1.19821 1.20770 1.42402 0.96719 0.86643 0.87555 1.24487 0.95210 1.00289 0.94035 1.69642 1.40820 1.37246 1.03665 0.86172 0.79689 0.83142 0.77878 1.19843 1.20741 1.18265 1.20091 1.07556 0.99709 0.92337 1.20550 0.98702 0.91158 0.98126 0.91031 0.91422 0.92333 0.92265 0.91906 0.92220 0.89482 0.90378 0.87760 0.90833 0.74886 0.86563 0.84276 0.90963 0.85939 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.10 37.16 0.34 -0.99 16 2 C 0.14 1.13 3.05 -66.95 -0.20 0.93 16 3 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 4 C -0.10 -0.59 3.08 -88.78 -0.27 -0.87 16 5 H 0.09 0.46 7.85 -51.93 -0.41 0.06 16 6 C -0.14 -0.64 9.14 37.16 0.34 -0.30 16 7 C -0.13 -0.83 6.52 -24.70 -0.16 -0.99 16 8 C 0.10 0.86 6.04 -2.65 -0.02 0.85 16 9 N -0.59 -6.25 3.07 -163.71 -0.50 -6.75 16 10 C 0.52 6.86 7.70 -11.65 -0.09 6.77 16 11 O -0.52 -7.55 15.52 5.48 0.09 -7.47 16 12 C 0.50 7.22 7.58 -11.65 -0.09 7.13 16 13 O -0.50 -8.02 11.56 5.46 0.06 -7.96 16 14 N -0.63 -9.06 5.32 -10.27 -0.05 -9.11 16 15 C 0.04 0.62 6.25 -83.69 -0.52 0.10 16 16 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 17 C -0.21 -4.29 9.12 -39.42 -0.36 -4.65 16 18 C 0.16 3.52 6.65 -39.06 -0.26 3.26 16 19 O -0.21 -5.50 8.58 0.12 0.00 -5.50 16 20 C -0.39 -10.75 9.90 30.89 0.31 -10.45 16 21 H 0.11 2.97 5.52 -52.49 -0.29 2.68 16 22 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 23 N -0.88 -24.90 13.96 55.48 0.77 -24.13 16 24 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.18 -3.53 9.98 -39.42 -0.39 -3.92 16 29 C -0.07 -1.18 8.64 -39.40 -0.34 -1.52 16 30 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.49 8.02 -51.93 -0.42 0.07 16 38 H 0.10 1.13 6.17 -51.93 -0.32 0.81 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.41 5.16 8.30 -40.82 -0.34 4.83 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.14 3.01 5.70 -52.49 -0.30 2.72 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 45 H 0.12 2.12 6.52 -52.49 -0.34 1.78 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -30.58 370.34 -7.25 -37.83 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.12 Total: 5.85 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.21 Total: -4.86 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.22 Total: -39.99 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.15 Total: -20.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.58 -7.25 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.525 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds