Wall clock time and date at job start Tue Mar 31 2020 17:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87090 * 2 1 4 4 C 1.54324 * 109.87847 * 238.82502 * 2 1 3 5 5 H 1.09000 * 110.72642 * 336.93435 * 4 2 1 6 6 C 1.53004 * 110.71819 * 100.02561 * 4 2 1 7 7 C 1.55154 * 102.94199 * 218.38794 * 4 2 1 8 8 C 1.54689 * 101.67673 * 35.34023 * 7 4 2 9 9 N 1.47023 * 109.88344 * 121.02228 * 2 1 3 10 10 C 1.34775 * 125.64311 * 298.31643 * 9 2 1 11 11 O 1.21366 * 120.00646 * 0.02562 * 10 9 2 12 12 C 1.49318 * 119.99869 * 180.02562 * 10 9 2 13 13 O 1.21393 * 119.99709 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00256 * 180.02562 * 12 10 9 15 15 C 1.39743 * 119.99923 * 174.54515 * 14 12 10 16 16 C 1.39002 * 120.00324 * 145.27364 * 15 14 12 17 17 C 1.37963 * 119.99162 * 179.97438 * 16 15 14 18 18 C 1.38937 * 120.01050 * 359.97438 * 17 16 15 19 19 O 1.35757 * 119.99658 * 179.97438 * 18 17 16 20 20 C 1.34798 * 116.99486 * 5.60986 * 19 18 17 21 21 H 1.07997 * 120.00475 * 5.35420 * 20 19 18 22 22 C 1.38659 * 119.99722 * 185.35393 * 20 19 18 23 23 N 1.31554 * 120.00091 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99857 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.46832 * 90.00064 * 24 22 20 26 26 H 1.48501 * 109.46945 * 210.00343 * 24 22 20 27 27 H 1.48503 * 109.47093 * 329.99922 * 24 22 20 28 28 C 1.38938 * 120.01224 * 0.02562 * 18 17 16 29 29 C 1.37977 * 120.00668 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.46937 * 300.43249 * 1 2 3 31 31 H 1.08995 * 109.47350 * 60.43603 * 1 2 3 32 32 H 1.09005 * 109.47352 * 180.43761 * 1 2 3 33 33 H 1.09004 * 109.47018 * 60.00146 * 6 4 2 34 34 H 1.09003 * 109.47276 * 179.97438 * 6 4 2 35 35 H 1.08995 * 109.47242 * 300.00118 * 6 4 2 36 36 H 1.09002 * 111.00040 * 153.57875 * 7 4 2 37 37 H 1.08996 * 111.00660 * 277.39018 * 7 4 2 38 38 H 1.09006 * 110.38930 * 204.36518 * 8 7 4 39 39 H 1.08994 * 110.24054 * 82.11231 * 8 7 4 40 40 H 0.96997 * 119.99503 * 354.55030 * 14 12 10 41 41 H 1.08001 * 119.99895 * 0.02562 * 16 15 14 42 42 H 1.07997 * 119.99433 * 179.72284 * 17 16 15 43 43 H 0.96998 * 120.00414 * 179.97438 * 23 22 20 44 44 H 1.07998 * 119.99785 * 179.97438 * 28 18 17 45 45 H 1.08002 * 120.00307 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2417 5 1 1.3039 -1.4459 -1.6182 6 6 2.4731 0.2348 -2.3342 7 6 3.2875 -1.5152 -0.6904 8 6 2.8191 -1.8754 0.7392 9 7 2.0301 -0.7125 1.1848 10 6 1.8086 -0.3579 2.4661 11 8 1.1448 0.6265 2.7174 12 6 2.3800 -1.1764 3.5766 13 8 3.0435 -2.1613 3.3254 14 7 2.1581 -0.8221 4.8580 15 6 2.5948 -1.6484 5.8969 16 6 3.0453 -1.0893 7.0872 17 6 3.4758 -1.9053 8.1129 18 6 3.4586 -3.2857 7.9566 19 8 3.8828 -4.0884 8.9660 20 6 4.1975 -3.4903 10.1323 21 1 4.0254 -2.4318 10.2601 22 6 4.7422 -4.2341 11.1680 23 7 5.0489 -3.6506 12.3064 24 14 5.0392 -6.0651 10.9471 25 1 6.4040 -6.2831 10.4040 26 1 4.9135 -6.7488 12.2594 27 1 4.0362 -6.6189 10.0024 28 6 3.0084 -3.8449 6.7671 29 6 2.5787 -3.0294 5.7404 30 1 -0.3633 0.5205 0.8861 31 1 -0.3634 0.5070 -0.8938 32 1 -0.3634 -1.0277 0.0078 33 1 3.2630 0.8834 -1.9553 34 1 2.8402 -0.3164 -3.2000 35 1 1.6147 0.8400 -2.6256 36 1 3.4850 -2.4128 -1.2765 37 1 4.1655 -0.8700 -0.6600 38 1 3.6777 -2.0246 1.3939 39 1 2.1971 -2.7702 0.7180 40 1 1.6954 0.0063 5.0589 41 1 3.0575 -0.0163 7.2091 42 1 3.8300 -1.4708 9.0360 43 1 5.4296 -4.1710 13.0311 44 1 2.9955 -4.9180 6.6457 45 1 2.2283 -3.4641 4.8159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116224852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:20 Heat of formation + Delta-G solvation = -79.176050 kcal Electronic energy + Delta-G solvation = -27792.639908 eV Core-core repulsion = 23775.490232 eV Total energy + Delta-G solvation = -4017.149676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24240 -41.09492 -40.25079 -38.90234 -38.31158 -35.63865 -34.38545 -33.97037 -32.38611 -31.97610 -30.17218 -29.33226 -27.40936 -26.14411 -25.02469 -24.03655 -23.60634 -22.40192 -21.40852 -20.73681 -19.81325 -19.23470 -18.92868 -18.28862 -17.70079 -17.29890 -16.83896 -16.51245 -15.92768 -15.84239 -15.58835 -15.45388 -15.07762 -14.96764 -14.66124 -14.48722 -14.43476 -14.20136 -14.08238 -13.94062 -13.54222 -13.48110 -13.37421 -13.13759 -12.82620 -12.72296 -12.67357 -12.54543 -12.47634 -11.98719 -11.80277 -11.57225 -11.51271 -11.48628 -11.18482 -10.77024 -10.56844 -9.93170 -9.90238 -8.77405 -8.49674 -6.21035 0.00478 0.45196 0.65004 1.12984 1.33357 1.36886 1.53468 2.01890 2.28882 2.35847 2.72782 3.05782 3.07403 3.15851 3.53094 3.58162 3.85096 3.97668 4.03719 4.19013 4.27193 4.36602 4.40645 4.48279 4.54337 4.58662 4.60291 4.65164 4.84756 4.91356 4.97550 4.98247 5.06991 5.10002 5.12582 5.14520 5.24567 5.29905 5.33476 5.40292 5.46485 5.48149 5.72654 5.80576 5.98876 6.11980 6.18540 6.58600 6.83794 6.84550 7.56982 8.61378 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.758281 B =13043.009831 C =13594.118479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.077 0.923 4 C -0.092 4.092 5 H 0.101 0.899 6 C -0.140 4.140 7 C -0.125 4.125 8 C 0.089 3.911 9 N -0.583 5.583 10 C 0.524 3.476 11 O -0.541 6.541 12 C 0.503 3.497 13 O -0.517 6.517 14 N -0.624 5.624 15 C 0.062 3.938 16 C -0.079 4.079 17 C -0.213 4.213 18 C 0.120 3.880 19 O -0.240 6.240 20 C -0.398 4.398 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.920 5.920 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.268 1.268 27 H -0.262 1.262 28 C -0.171 4.171 29 C -0.067 4.067 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.427 0.573 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.285 0.715 44 H 0.135 0.865 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 6.264 -30.743 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.095 0.905 4 C -0.111 4.111 5 H 0.119 0.881 6 C -0.197 4.197 7 C -0.163 4.163 8 C -0.032 4.032 9 N -0.316 5.316 10 C 0.307 3.693 11 O -0.419 6.419 12 C 0.285 3.715 13 O -0.393 6.393 14 N -0.271 5.271 15 C -0.031 4.031 16 C -0.099 4.099 17 C -0.233 4.233 18 C 0.070 3.930 19 O -0.147 6.147 20 C -0.474 4.474 21 H 0.103 0.897 22 C -0.188 4.188 23 N -0.560 5.560 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.191 4.191 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.266 0.734 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.153 0.847 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.830 5.866 -30.537 31.836 hybrid contribution 0.069 0.058 1.070 1.074 sum -6.761 5.924 -29.466 30.807 Atomic orbital electron populations 1.22114 0.94001 1.02531 1.03073 1.22061 0.95211 0.96493 0.83652 0.90528 1.22327 0.97831 0.97764 0.93137 0.88111 1.21759 1.01755 0.98525 0.97659 1.22926 0.97757 1.02109 0.93487 1.22765 0.95992 0.87471 0.97012 1.48511 1.50106 1.29035 1.03931 1.19467 0.81651 0.84950 0.83276 1.90749 1.40119 1.27433 1.83589 1.20294 0.81163 0.85820 0.84179 1.90743 1.37704 1.27333 1.83504 1.42863 1.56044 1.24930 1.03296 1.17379 1.06608 0.89982 0.89118 1.20802 0.97143 1.00422 0.91550 1.21136 1.08021 0.92928 1.01199 1.19643 0.94346 0.90406 0.88630 1.83533 1.75703 1.35550 1.19880 1.20718 1.42671 0.96086 0.87973 0.89676 1.25264 0.95259 1.04534 0.93743 1.69720 1.42844 1.38876 1.04562 0.85250 0.79454 0.78078 0.78176 1.19245 1.19268 1.18582 1.20304 1.06476 1.00751 0.91542 1.20749 0.98302 0.91499 0.98119 0.93530 0.89155 0.92207 0.92726 0.90620 0.91605 0.87354 0.90366 0.89587 0.90351 0.73437 0.83250 0.85924 0.90558 0.84708 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.10 71.98 0.66 -1.58 16 2 C 0.13 1.84 3.05 45.34 0.14 1.98 16 3 H 0.08 1.20 7.83 -2.39 -0.02 1.18 16 4 C -0.09 -0.77 3.08 -9.60 -0.03 -0.80 16 5 H 0.10 0.65 7.85 -2.39 -0.02 0.63 16 6 C -0.14 -0.80 9.14 71.98 0.66 -0.14 16 7 C -0.12 -1.17 6.52 31.91 0.21 -0.97 16 8 C 0.09 1.43 6.04 86.78 0.52 1.96 16 9 N -0.58 -11.31 3.07 -790.21 -2.42 -13.73 16 10 C 0.52 12.89 7.70 87.23 0.67 13.56 16 11 O -0.54 -14.93 15.52 -3.30 -0.05 -14.99 16 12 C 0.50 13.57 7.58 87.23 0.66 14.24 16 13 O -0.52 -15.45 11.56 -3.38 -0.04 -15.49 16 14 N -0.62 -16.67 5.32 -304.74 -1.62 -18.29 16 15 C 0.06 2.01 6.25 38.24 0.24 2.25 16 16 C -0.08 -2.68 9.96 22.39 0.22 -2.46 16 17 C -0.21 -9.04 9.12 22.37 0.20 -8.84 16 18 C 0.12 5.51 6.65 22.61 0.15 5.66 16 19 O -0.24 -12.79 8.58 -22.50 -0.19 -12.98 16 20 C -0.40 -22.98 9.90 67.92 0.67 -22.31 16 21 H 0.09 5.09 5.52 -2.91 -0.02 5.07 16 22 C 0.01 0.62 5.49 84.83 0.47 1.09 16 23 N -0.92 -54.19 13.96 21.61 0.30 -53.89 16 24 Si 0.97 44.99 28.62 68.60 1.96 46.95 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 28 C -0.17 -6.70 9.98 22.38 0.22 -6.48 16 29 C -0.07 -2.30 8.64 22.39 0.19 -2.10 16 30 H 0.05 0.90 6.88 -2.39 -0.02 0.88 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.38 8.10 -2.39 -0.02 0.36 16 34 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.76 8.02 -2.39 -0.02 0.75 16 38 H 0.09 1.73 6.17 -2.38 -0.01 1.72 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.43 9.64 8.30 -92.71 -0.77 8.87 16 41 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 42 H 0.12 5.61 5.70 -2.91 -0.02 5.59 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.14 4.43 6.52 -2.91 -0.02 4.41 16 Total: -1.00 -68.17 370.34 4.06 -64.11 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.26 Total: 23.25 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.86 Total: -4.95 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.74 Total: -85.91 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.28 Total: -43.46 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.95 kcal Total: -68.17 4.06 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.063 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds