Wall clock time and date at job start Tue Mar 31 2020 17:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64036 * 2 1 4 4 C 1.55157 * 110.72029 * 123.33353 * 2 1 3 5 5 C 1.54910 * 101.57946 * 153.86681 * 4 2 1 6 6 N 1.47420 * 104.83236 * 322.98948 * 5 4 2 7 7 C 1.34777 * 125.64890 * 204.14771 * 6 5 4 8 8 O 1.21366 * 120.00333 * 179.97438 * 7 6 5 9 9 C 1.49320 * 119.99977 * 359.97438 * 7 6 5 10 10 O 1.21387 * 120.00207 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99977 * 179.97438 * 9 7 6 12 12 C 1.39737 * 120.00046 * 174.78181 * 11 9 7 13 13 C 1.38996 * 120.00872 * 326.10221 * 12 11 9 14 14 C 1.37971 * 119.99709 * 179.76295 * 13 12 11 15 15 C 1.38938 * 120.00278 * 0.51514 * 14 13 12 16 16 O 1.35756 * 119.98968 * 179.71483 * 15 14 13 17 17 C 1.34807 * 116.99815 * 185.92580 * 16 15 14 18 18 H 1.08007 * 119.99679 * 5.41602 * 17 16 15 19 19 C 1.38644 * 119.99894 * 185.40695 * 17 16 15 20 20 N 1.31564 * 120.00420 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46854 * 90.00254 * 21 19 17 23 23 H 1.48489 * 109.47604 * 210.00543 * 21 19 17 24 24 H 1.48503 * 109.46882 * 330.00935 * 21 19 17 25 25 C 1.38937 * 120.01252 * 359.74032 * 15 14 13 26 26 C 1.37962 * 120.01099 * 0.02562 * 25 15 14 27 27 C 1.47022 * 108.70535 * 24.12922 * 6 5 4 28 28 H 1.09005 * 110.00876 * 118.42761 * 27 6 5 29 29 C 1.52992 * 109.88629 * 239.52236 * 27 6 5 30 30 H 1.09002 * 109.47407 * 183.14467 * 1 2 3 31 31 H 1.09000 * 109.47288 * 303.14216 * 1 2 3 32 32 H 1.09000 * 109.47635 * 63.14359 * 1 2 3 33 33 H 1.09001 * 111.00174 * 271.93812 * 4 2 1 34 34 H 1.08997 * 111.00344 * 35.75714 * 4 2 1 35 35 H 1.09002 * 110.36674 * 81.83301 * 5 4 2 36 36 H 1.09001 * 110.36476 * 204.15391 * 5 4 2 37 37 H 0.96997 * 120.00220 * 354.78001 * 11 9 7 38 38 H 1.08009 * 120.00060 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.99774 * 180.27051 * 14 13 12 40 40 H 0.96994 * 119.99989 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.99375 * 180.02562 * 25 15 14 42 42 H 1.08001 * 120.00537 * 179.97438 * 26 25 15 43 43 H 1.09000 * 109.47439 * 177.80377 * 29 27 6 44 44 H 1.09003 * 109.46901 * 57.80404 * 29 27 6 45 45 H 1.09003 * 109.47672 * 297.80997 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7975 1.2125 5 6 3.4632 -1.2509 0.6854 6 7 3.2445 -1.5494 -0.7416 7 6 3.9916 -2.3818 -1.4935 8 8 3.7180 -2.5534 -2.6633 9 6 5.1562 -3.0930 -0.8871 10 8 5.4303 -2.9211 0.2828 11 7 5.9031 -3.9258 -1.6389 12 6 7.0557 -4.5064 -1.1032 13 6 7.8289 -3.8009 -0.1886 14 6 8.9642 -4.3763 0.3439 15 6 9.3405 -5.6569 -0.0421 16 8 10.4608 -6.2206 0.4776 17 6 10.8374 -7.4121 -0.0281 18 1 10.3074 -7.8335 -0.8695 19 6 11.9053 -8.0964 0.5319 20 7 12.5508 -7.5833 1.5571 21 14 12.4278 -9.7472 -0.1693 22 1 13.4428 -9.5345 -1.2323 23 1 13.0104 -10.5821 0.9116 24 1 11.2453 -10.4370 -0.7449 25 6 8.5707 -6.3603 -0.9603 26 6 7.4328 -5.7873 -1.4895 27 6 2.0759 -0.7892 -1.2086 28 1 2.3715 -0.0991 -1.9990 29 6 1.0049 -1.7492 -1.7300 30 1 -0.3634 -1.0261 0.0564 31 1 -0.3634 0.5618 0.8605 32 1 -0.3634 0.4642 -0.9168 33 1 2.1849 -0.1552 2.0868 34 1 1.4448 -1.6556 1.4351 35 1 4.1931 -0.4491 0.7977 36 1 3.7960 -2.1446 1.2133 37 1 5.6406 -4.1221 -2.5518 38 1 7.5386 -2.8038 0.1084 39 1 9.5625 -3.8298 1.0578 40 1 13.2976 -8.0623 1.9490 41 1 8.8633 -7.3559 -1.2598 42 1 6.8347 -6.3341 -2.2035 43 1 0.1269 -1.1815 -2.0380 44 1 0.7274 -2.4474 -0.9402 45 1 1.3973 -2.3029 -2.5830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116224853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:26 Heat of formation + Delta-G solvation = -57.903682 kcal Electronic energy + Delta-G solvation = -27805.468854 eV Core-core repulsion = 23789.241618 eV Total energy + Delta-G solvation = -4016.227237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13736 -39.78680 -38.71737 -37.91510 -36.61380 -34.24400 -33.33530 -32.23093 -31.52017 -30.29466 -28.65035 -27.97348 -25.75956 -25.40851 -24.42101 -22.80982 -22.30706 -21.14239 -20.11378 -19.36454 -18.25132 -17.97511 -17.29946 -16.83526 -16.54732 -16.19347 -15.73644 -14.99268 -14.73199 -14.60507 -14.28093 -14.20747 -13.88873 -13.68588 -13.59952 -13.36083 -13.18935 -12.88490 -12.82621 -12.57537 -12.50475 -12.24886 -11.94631 -11.81320 -11.71192 -11.65491 -11.48295 -11.13676 -11.09349 -10.92816 -10.83319 -10.69801 -10.46915 -9.81637 -9.50191 -9.27913 -9.01011 -8.76423 -8.27647 -7.00605 -6.48973 -4.06625 1.27093 2.12158 2.13755 2.31696 3.10137 3.11795 3.16669 3.23560 3.43283 3.93643 4.03904 4.20764 4.37871 4.41133 4.52603 4.78409 4.94401 4.96669 5.02443 5.06479 5.21739 5.24517 5.29085 5.32421 5.45475 5.50843 5.56787 5.62905 5.66779 5.69442 5.76374 5.86012 5.90345 6.05355 6.09272 6.13240 6.18138 6.71075 6.74382 6.82751 7.01980 7.05525 7.16154 7.30360 7.43087 7.66694 7.73139 7.95189 8.10122 8.96212 9.65438 10.68669 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.002072 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.975411 B =13511.953086 C =14002.947097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.094 3.906 6 N -0.588 5.588 7 C 0.525 3.475 8 O -0.523 6.523 9 C 0.498 3.502 10 O -0.505 6.505 11 N -0.625 5.625 12 C 0.027 3.973 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.150 3.850 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.219 4.219 26 C -0.082 4.082 27 C 0.136 3.864 28 H 0.079 0.921 29 C -0.165 4.165 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.413 0.587 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.271 0.729 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.068 13.230 -4.022 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.322 5.322 7 C 0.308 3.692 8 O -0.400 6.400 9 C 0.280 3.720 10 O -0.381 6.381 11 N -0.270 5.270 12 C -0.065 4.065 13 C -0.083 4.083 14 C -0.198 4.198 15 C 0.095 3.905 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.239 4.239 26 C -0.102 4.102 27 C 0.033 3.967 28 H 0.097 0.903 29 C -0.223 4.223 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.250 0.750 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.131 0.869 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.606 13.232 -3.541 25.582 hybrid contribution 0.124 -0.943 -0.822 1.257 sum -21.482 12.289 -4.363 25.131 Atomic orbital electron populations 1.21859 0.93657 1.02516 1.01981 1.22278 0.96590 0.99184 0.94029 0.89555 1.22950 0.96004 1.00362 0.97634 1.22707 0.97046 1.03064 0.79946 1.48336 1.28766 1.42899 1.12214 1.19829 0.83485 0.79992 0.85869 1.90741 1.70274 1.63172 1.15773 1.19935 0.83806 0.81691 0.86570 1.90734 1.69410 1.62611 1.15313 1.42877 1.23532 1.44170 1.16451 1.17214 0.89724 0.94345 1.05251 1.20571 0.92769 0.98949 0.96047 1.20098 0.99461 0.94466 1.05731 1.19449 0.86990 0.92265 0.91777 1.83996 1.34186 1.34111 1.55297 1.21331 1.15382 0.95247 1.14840 0.88990 1.25312 0.95790 0.99526 0.95920 1.70039 1.19858 1.38266 1.21230 0.85700 0.79179 0.80014 0.78471 1.19838 1.20238 1.19165 1.20989 0.97527 1.01966 1.03381 1.20501 0.97213 0.92282 1.00224 1.21696 0.85281 0.92959 0.96741 0.90341 1.22232 0.98225 0.99744 1.02096 0.91827 0.92226 0.92192 0.89540 0.90405 0.90748 0.87740 0.75039 0.85813 0.85948 0.91924 0.84908 0.86872 0.91135 0.92281 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 7.98 37.16 0.30 -0.38 16 2 C -0.10 -0.62 3.47 -88.79 -0.31 -0.93 16 3 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.86 6.53 -24.58 -0.16 -1.02 16 5 C 0.09 0.90 6.06 -2.53 -0.02 0.88 16 6 N -0.59 -6.46 3.08 -163.57 -0.50 -6.96 16 7 C 0.53 7.07 7.69 -11.65 -0.09 6.98 16 8 O -0.52 -7.73 15.39 5.48 0.08 -7.64 16 9 C 0.50 7.47 7.58 -11.65 -0.09 7.38 16 10 O -0.51 -8.37 11.49 5.46 0.06 -8.30 16 11 N -0.62 -9.38 5.32 -10.27 -0.05 -9.44 16 12 C 0.03 0.48 6.27 -83.69 -0.52 -0.05 16 13 C -0.06 -1.22 8.64 -39.40 -0.34 -1.56 16 14 C -0.18 -3.81 9.98 -39.42 -0.39 -4.20 16 15 C 0.15 3.57 6.65 -39.06 -0.26 3.31 16 16 O -0.17 -4.86 9.75 0.09 0.00 -4.86 16 17 C -0.39 -10.74 9.44 30.88 0.29 -10.45 16 18 H 0.09 2.31 5.29 -52.48 -0.28 2.04 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 21 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 C -0.22 -4.63 9.12 -39.42 -0.36 -4.99 16 26 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 27 C 0.14 1.17 3.43 -66.96 -0.23 0.94 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 C -0.17 -1.37 7.92 37.15 0.29 -1.07 16 30 H 0.06 0.32 6.62 -51.93 -0.34 -0.03 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.25 7.58 -51.93 -0.39 -0.14 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.18 6.16 -51.93 -0.32 0.87 16 37 H 0.41 5.33 8.29 -40.82 -0.34 4.99 16 38 H 0.12 2.25 6.45 -52.48 -0.34 1.91 16 39 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.13 2.78 5.71 -52.48 -0.30 2.48 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.07 0.44 6.65 -51.93 -0.35 0.09 16 44 H 0.06 0.49 7.58 -51.93 -0.39 0.10 16 45 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -31.69 366.07 -7.45 -39.13 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.91 Total: 7.58 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.38 Total: -6.05 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.20 Total: -40.55 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.15 Total: -20.81 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.69 -7.45 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.771 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds