Wall clock time and date at job start Tue Mar 31 2020 17:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64036 * 2 1 4 4 C 1.55157 * 110.72029 * 123.33353 * 2 1 3 5 5 C 1.54910 * 101.57946 * 153.86681 * 4 2 1 6 6 N 1.47420 * 104.83236 * 322.98948 * 5 4 2 7 7 C 1.34777 * 125.64890 * 204.14771 * 6 5 4 8 8 O 1.21366 * 120.00333 * 179.97438 * 7 6 5 9 9 C 1.49320 * 119.99977 * 359.97438 * 7 6 5 10 10 O 1.21387 * 120.00207 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99977 * 179.97438 * 9 7 6 12 12 C 1.39737 * 120.00046 * 174.78181 * 11 9 7 13 13 C 1.38996 * 120.00872 * 326.10221 * 12 11 9 14 14 C 1.37971 * 119.99709 * 179.76295 * 13 12 11 15 15 C 1.38938 * 120.00278 * 0.51514 * 14 13 12 16 16 O 1.35756 * 119.98968 * 179.71483 * 15 14 13 17 17 C 1.34807 * 116.99815 * 185.92580 * 16 15 14 18 18 H 1.08007 * 119.99679 * 5.41602 * 17 16 15 19 19 C 1.38644 * 119.99894 * 185.40695 * 17 16 15 20 20 N 1.31564 * 120.00420 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46854 * 90.00254 * 21 19 17 23 23 H 1.48489 * 109.47604 * 210.00543 * 21 19 17 24 24 H 1.48503 * 109.46882 * 330.00935 * 21 19 17 25 25 C 1.38937 * 120.01252 * 359.74032 * 15 14 13 26 26 C 1.37962 * 120.01099 * 0.02562 * 25 15 14 27 27 C 1.47022 * 108.70535 * 24.12922 * 6 5 4 28 28 H 1.09005 * 110.00876 * 118.42761 * 27 6 5 29 29 C 1.52992 * 109.88629 * 239.52236 * 27 6 5 30 30 H 1.09002 * 109.47407 * 183.14467 * 1 2 3 31 31 H 1.09000 * 109.47288 * 303.14216 * 1 2 3 32 32 H 1.09000 * 109.47635 * 63.14359 * 1 2 3 33 33 H 1.09001 * 111.00174 * 271.93812 * 4 2 1 34 34 H 1.08997 * 111.00344 * 35.75714 * 4 2 1 35 35 H 1.09002 * 110.36674 * 81.83301 * 5 4 2 36 36 H 1.09001 * 110.36476 * 204.15391 * 5 4 2 37 37 H 0.96997 * 120.00220 * 354.78001 * 11 9 7 38 38 H 1.08009 * 120.00060 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.99774 * 180.27051 * 14 13 12 40 40 H 0.96994 * 119.99989 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.99375 * 180.02562 * 25 15 14 42 42 H 1.08001 * 120.00537 * 179.97438 * 26 25 15 43 43 H 1.09000 * 109.47439 * 177.80377 * 29 27 6 44 44 H 1.09003 * 109.46901 * 57.80404 * 29 27 6 45 45 H 1.09003 * 109.47672 * 297.80997 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7975 1.2125 5 6 3.4632 -1.2509 0.6854 6 7 3.2445 -1.5494 -0.7416 7 6 3.9916 -2.3818 -1.4935 8 8 3.7180 -2.5534 -2.6633 9 6 5.1562 -3.0930 -0.8871 10 8 5.4303 -2.9211 0.2828 11 7 5.9031 -3.9258 -1.6389 12 6 7.0557 -4.5064 -1.1032 13 6 7.8289 -3.8009 -0.1886 14 6 8.9642 -4.3763 0.3439 15 6 9.3405 -5.6569 -0.0421 16 8 10.4608 -6.2206 0.4776 17 6 10.8374 -7.4121 -0.0281 18 1 10.3074 -7.8335 -0.8695 19 6 11.9053 -8.0964 0.5319 20 7 12.5508 -7.5833 1.5571 21 14 12.4278 -9.7472 -0.1693 22 1 13.4428 -9.5345 -1.2323 23 1 13.0104 -10.5821 0.9116 24 1 11.2453 -10.4370 -0.7449 25 6 8.5707 -6.3603 -0.9603 26 6 7.4328 -5.7873 -1.4895 27 6 2.0759 -0.7892 -1.2086 28 1 2.3715 -0.0991 -1.9990 29 6 1.0049 -1.7492 -1.7300 30 1 -0.3634 -1.0261 0.0564 31 1 -0.3634 0.5618 0.8605 32 1 -0.3634 0.4642 -0.9168 33 1 2.1849 -0.1552 2.0868 34 1 1.4448 -1.6556 1.4351 35 1 4.1931 -0.4491 0.7977 36 1 3.7960 -2.1446 1.2133 37 1 5.6406 -4.1221 -2.5518 38 1 7.5386 -2.8038 0.1084 39 1 9.5625 -3.8298 1.0578 40 1 13.2976 -8.0623 1.9490 41 1 8.8633 -7.3559 -1.2598 42 1 6.8347 -6.3341 -2.2035 43 1 0.1269 -1.1815 -2.0380 44 1 0.7274 -2.4474 -0.9402 45 1 1.3973 -2.3029 -2.5830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116224853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:25 Heat of formation + Delta-G solvation = -78.185089 kcal Electronic energy + Delta-G solvation = -27806.348322 eV Core-core repulsion = 23789.241618 eV Total energy + Delta-G solvation = -4017.106704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24398 -41.05575 -40.20580 -38.93981 -38.22989 -35.63574 -34.24527 -34.09607 -32.19222 -31.93843 -30.00071 -28.87808 -27.43737 -26.42196 -25.41038 -24.00217 -23.68241 -22.53346 -21.27908 -20.12933 -19.88430 -19.21750 -18.93079 -18.07194 -17.70490 -17.34665 -16.75650 -16.38038 -16.16436 -16.01250 -15.60216 -15.43766 -15.23649 -14.87828 -14.66679 -14.57424 -14.28865 -14.15111 -13.81495 -13.67062 -13.53079 -13.35081 -13.30338 -13.09780 -12.87283 -12.76746 -12.64983 -12.37653 -12.30061 -12.11460 -11.75869 -11.51765 -11.47564 -11.39008 -11.10787 -10.67523 -10.54774 -9.91412 -9.88806 -8.69554 -8.46584 -6.13615 0.02665 0.48801 0.69783 1.14114 1.37508 1.46353 1.54856 2.03089 2.18463 2.37160 2.79221 3.12989 3.17351 3.47139 3.53661 3.58665 3.87406 4.00509 4.07146 4.15884 4.28913 4.36071 4.44955 4.50928 4.55859 4.60237 4.62386 4.77696 4.81742 4.88316 4.94214 5.02598 5.10155 5.11154 5.12037 5.14888 5.23418 5.28694 5.33296 5.36753 5.47057 5.52257 5.62565 5.94986 6.01211 6.08214 6.19255 6.60290 6.85697 6.97822 7.76686 8.76315 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.002072 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.975411 B =13511.953086 C =14002.947097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.098 0.902 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.583 5.583 7 C 0.525 3.475 8 O -0.539 6.539 9 C 0.501 3.499 10 O -0.520 6.520 11 N -0.621 5.621 12 C 0.053 3.947 13 C -0.065 4.065 14 C -0.185 4.185 15 C 0.113 3.887 16 O -0.226 6.226 17 C -0.412 4.412 18 H 0.106 0.894 19 C -0.024 4.024 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.219 4.219 26 C -0.074 4.074 27 C 0.127 3.873 28 H 0.077 0.923 29 C -0.159 4.159 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.427 0.573 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.295 13.960 -5.393 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.117 0.883 4 C -0.161 4.161 5 C -0.033 4.033 6 N -0.316 5.316 7 C 0.308 3.692 8 O -0.418 6.418 9 C 0.283 3.717 10 O -0.396 6.396 11 N -0.268 5.268 12 C -0.040 4.040 13 C -0.085 4.085 14 C -0.204 4.204 15 C 0.062 3.938 16 O -0.132 6.132 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.174 1.174 25 C -0.239 4.239 26 C -0.094 4.094 27 C 0.025 3.975 28 H 0.095 0.905 29 C -0.217 4.217 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.266 0.734 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.918 14.016 -4.934 29.012 hybrid contribution 0.792 -0.879 -0.445 1.264 sum -24.126 13.137 -5.379 27.992 Atomic orbital electron populations 1.21855 0.92261 1.02706 1.02982 1.22289 0.97586 0.99129 0.92111 0.88344 1.22947 0.93872 1.00813 0.98462 1.22813 0.99198 1.02318 0.79018 1.48503 1.28635 1.41717 1.12714 1.19448 0.83360 0.80638 0.85790 1.90741 1.70659 1.64101 1.16256 1.20329 0.84043 0.81024 0.86301 1.90744 1.69909 1.62825 1.16122 1.42824 1.22668 1.44154 1.17204 1.17335 0.89628 0.93949 1.03117 1.20699 0.92077 0.99471 0.96246 1.20240 1.00250 0.93997 1.05957 1.19911 0.87281 0.93346 0.93254 1.83963 1.36662 1.35150 1.57472 1.21855 1.16024 0.95375 1.15577 0.87634 1.26615 0.95556 1.03736 0.96225 1.70189 1.21256 1.40584 1.23676 0.84572 0.79223 0.74546 0.77797 1.18866 1.19850 1.17388 1.21120 0.98070 1.01991 1.02702 1.20821 0.96221 0.92249 1.00123 1.21987 0.84465 0.92982 0.98056 0.90454 1.22187 0.98807 0.99687 1.01008 0.92073 0.91032 0.91427 0.87513 0.90334 0.90408 0.89727 0.73407 0.84691 0.86280 0.91828 0.84857 0.82719 0.88812 0.92368 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 7.98 71.98 0.57 -0.25 16 2 C -0.09 -0.83 3.47 -9.61 -0.03 -0.86 16 3 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 4 C -0.12 -1.27 6.53 31.99 0.21 -1.06 16 5 C 0.09 1.53 6.06 86.86 0.53 2.05 16 6 N -0.58 -11.81 3.08 -789.78 -2.43 -14.25 16 7 C 0.53 13.36 7.69 87.23 0.67 14.03 16 8 O -0.54 -15.13 15.39 -3.30 -0.05 -15.18 16 9 C 0.50 14.19 7.58 87.23 0.66 14.86 16 10 O -0.52 -16.59 11.49 -3.36 -0.04 -16.63 16 11 N -0.62 -17.23 5.32 -304.75 -1.62 -18.86 16 12 C 0.05 1.78 6.27 38.25 0.24 2.02 16 13 C -0.07 -2.45 8.64 22.39 0.19 -2.26 16 14 C -0.18 -8.13 9.98 22.37 0.22 -7.91 16 15 C 0.11 5.59 6.65 22.61 0.15 5.74 16 16 O -0.23 -13.45 9.75 -22.58 -0.22 -13.67 16 17 C -0.41 -23.51 9.44 67.92 0.64 -22.87 16 18 H 0.11 5.42 5.29 -2.91 -0.02 5.41 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 20 N -0.92 -56.02 13.67 21.61 0.30 -55.72 16 21 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 25 C -0.22 -9.23 9.12 22.37 0.20 -9.02 16 26 C -0.07 -2.51 9.96 22.39 0.22 -2.29 16 27 C 0.13 1.89 3.43 45.34 0.16 2.05 16 28 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 29 C -0.16 -2.30 7.92 71.98 0.57 -1.73 16 30 H 0.06 0.41 6.62 -2.39 -0.02 0.40 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.32 7.58 -2.39 -0.02 0.31 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.83 8.02 -2.39 -0.02 0.81 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.84 6.16 -2.39 -0.01 1.82 16 37 H 0.43 9.82 8.29 -92.71 -0.77 9.05 16 38 H 0.14 4.78 6.45 -2.91 -0.02 4.76 16 39 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 42 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 43 H 0.09 0.90 6.65 -2.39 -0.02 0.89 16 44 H 0.06 0.85 7.58 -2.39 -0.02 0.83 16 45 H 0.04 0.90 6.76 -2.39 -0.02 0.88 16 Total: -1.00 -72.75 366.07 3.90 -68.85 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.27 Total: 29.64 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.68 Total: -8.35 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.76 Total: -88.83 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.31 Total: -45.48 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -72.75 3.90 -68.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.337 kcal (2) G-P(sol) polarization free energy of solvation -72.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds