Wall clock time and date at job start Tue Mar 31 2020 17:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.63993 * 2 1 4 4 C 1.55158 * 110.71738 * 236.66875 * 2 1 3 5 5 C 1.55138 * 101.48556 * 205.96761 * 4 2 1 6 6 N 1.47428 * 104.71885 * 37.29093 * 5 4 2 7 7 C 1.34778 * 125.64453 * 155.82155 * 6 5 4 8 8 O 1.21363 * 120.00129 * 179.69602 * 7 6 5 9 9 C 1.49320 * 119.99752 * 359.69112 * 7 6 5 10 10 O 1.21390 * 120.00644 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99790 * 180.02562 * 9 7 6 12 12 C 1.39746 * 120.00264 * 184.51628 * 11 9 7 13 13 C 1.38995 * 120.00250 * 324.61151 * 12 11 9 14 14 C 1.37970 * 119.99148 * 179.74259 * 13 12 11 15 15 C 1.38936 * 120.00378 * 0.53284 * 14 13 12 16 16 O 1.35755 * 119.99352 * 179.76420 * 15 14 13 17 17 C 1.34797 * 117.00304 * 185.32480 * 16 15 14 18 18 H 1.07997 * 120.00198 * 354.95783 * 17 16 15 19 19 C 1.38660 * 120.00428 * 174.96512 * 17 16 15 20 20 N 1.31553 * 120.00415 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99562 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46941 * 90.00219 * 21 19 17 23 23 H 1.48497 * 109.47097 * 210.00223 * 21 19 17 24 24 H 1.48494 * 109.47293 * 330.00216 * 21 19 17 25 25 C 1.38931 * 120.01660 * 359.74264 * 15 14 13 26 26 C 1.37971 * 120.00586 * 359.97438 * 25 15 14 27 27 C 1.47020 * 108.70432 * 335.55420 * 6 5 4 28 28 H 1.09001 * 109.88167 * 241.86293 * 27 6 5 29 29 C 1.53001 * 109.87873 * 120.70360 * 27 6 5 30 30 H 1.09003 * 109.46625 * 296.85620 * 1 2 3 31 31 H 1.08992 * 109.47464 * 56.85495 * 1 2 3 32 32 H 1.09002 * 109.47083 * 176.86036 * 1 2 3 33 33 H 1.08999 * 111.00749 * 324.20442 * 4 2 1 34 34 H 1.09001 * 111.00949 * 88.02288 * 4 2 1 35 35 H 1.09007 * 110.49340 * 278.45321 * 5 4 2 36 36 H 1.08992 * 110.34597 * 156.05803 * 5 4 2 37 37 H 0.97001 * 119.99842 * 4.24018 * 11 9 7 38 38 H 1.08003 * 120.00697 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.99828 * 180.27668 * 14 13 12 40 40 H 0.96993 * 119.99984 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00206 * 179.97438 * 25 15 14 42 42 H 1.08002 * 120.00416 * 180.02562 * 26 25 15 43 43 H 1.09001 * 109.47108 * 61.45575 * 29 27 6 44 44 H 1.09005 * 109.47144 * 181.44838 * 29 27 6 45 45 H 1.08997 * 109.47324 * 301.45647 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7974 -1.2125 5 6 3.4666 -1.2467 -0.6842 6 7 3.2446 -1.5494 0.7415 7 6 3.9924 -2.3810 1.4936 8 8 3.7195 -2.5517 2.6638 9 6 5.1568 -3.0923 0.8871 10 8 5.4302 -2.9213 -0.2832 11 7 5.9044 -3.9243 1.6391 12 6 7.0488 -4.5167 1.0984 13 6 7.0709 -4.8925 -0.2396 14 6 8.2027 -5.4725 -0.7744 15 6 9.3164 -5.6909 0.0270 16 8 10.4283 -6.2660 -0.4984 17 6 11.4318 -6.5506 0.3555 18 1 11.3631 -6.2476 1.3898 19 6 12.5523 -7.2325 -0.0941 20 7 13.5319 -7.5098 0.7391 21 14 12.6710 -7.7571 -1.8830 22 1 13.3165 -6.6783 -2.6734 23 1 13.4823 -8.9969 -1.9824 24 1 11.3085 -8.0132 -2.4152 25 6 9.2927 -5.3206 1.3658 26 6 8.1632 -4.7352 1.8998 27 6 2.0761 -0.7891 1.2085 28 1 2.3742 -0.0990 1.9979 29 6 1.0051 -1.7493 1.7299 30 1 -0.3633 0.4643 0.9169 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 1.4452 -1.6559 -1.4348 34 1 2.1843 -0.1554 -2.0871 35 1 4.1947 -0.4427 -0.7923 36 1 3.8032 -2.1381 -1.2134 37 1 5.6503 -4.1088 2.5569 38 1 6.2038 -4.7264 -0.8616 39 1 8.2216 -5.7605 -1.8152 40 1 14.3155 -7.9871 0.4247 41 1 10.1584 -5.4909 1.9887 42 1 8.1449 -4.4470 2.9405 43 1 1.4020 -2.3122 2.5747 44 1 0.1321 -1.1805 2.0504 45 1 0.7181 -2.4391 0.9363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116224854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:30 Heat of formation + Delta-G solvation = -54.994641 kcal Electronic energy + Delta-G solvation = -27841.766326 eV Core-core repulsion = 23825.665235 eV Total energy + Delta-G solvation = -4016.101091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.18862 -39.86692 -38.86597 -37.97224 -36.75601 -34.32260 -33.37587 -32.37448 -31.54055 -30.38254 -28.78871 -28.10259 -25.81882 -25.36453 -24.38683 -22.81419 -22.42869 -21.14306 -20.15264 -19.40088 -18.27854 -17.94478 -17.44615 -16.92440 -16.66971 -16.22899 -15.84365 -15.08877 -14.81221 -14.68436 -14.29813 -13.98493 -13.93537 -13.79079 -13.71624 -13.49322 -13.21789 -12.96313 -12.80165 -12.54554 -12.38606 -12.33206 -12.26746 -12.00139 -11.83863 -11.74231 -11.55190 -11.16328 -10.99199 -10.94375 -10.85751 -10.82588 -10.21132 -9.77909 -9.54435 -9.34180 -9.05116 -8.82989 -8.36368 -7.15386 -6.45901 -4.11710 1.22251 2.01884 2.04845 2.25402 3.14983 3.21802 3.24076 3.37600 3.39230 4.00441 4.17035 4.20680 4.32016 4.37202 4.44771 4.75403 4.81679 4.91229 4.93794 4.99931 5.06607 5.19108 5.26517 5.29533 5.42728 5.44013 5.52814 5.59056 5.63314 5.63975 5.73198 5.83066 5.86764 5.96652 6.02970 6.05791 6.10544 6.56922 6.67724 6.74868 6.93426 7.00524 7.15987 7.32129 7.49544 7.65857 7.73160 7.95557 8.04570 8.88862 9.50346 10.61321 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002140 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.125754 B =13080.180374 C =13719.985433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.094 3.906 6 N -0.588 5.588 7 C 0.525 3.475 8 O -0.522 6.522 9 C 0.500 3.500 10 O -0.506 6.506 11 N -0.626 5.626 12 C 0.033 3.967 13 C -0.066 4.066 14 C -0.179 4.179 15 C 0.156 3.844 16 O -0.213 6.213 17 C -0.390 4.390 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.083 4.083 27 C 0.136 3.864 28 H 0.079 0.921 29 C -0.165 4.165 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.415 0.585 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.280 0.720 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.035 13.677 -1.133 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.322 5.322 7 C 0.308 3.692 8 O -0.398 6.398 9 C 0.282 3.718 10 O -0.382 6.382 11 N -0.271 5.271 12 C -0.059 4.059 13 C -0.086 4.086 14 C -0.199 4.199 15 C 0.103 3.897 16 O -0.118 6.118 17 C -0.466 4.466 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.514 5.514 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.226 4.226 26 C -0.103 4.103 27 C 0.033 3.967 28 H 0.097 0.903 29 C -0.223 4.223 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.157 0.843 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.652 13.495 -1.474 28.143 hybrid contribution 0.251 -0.232 -0.017 0.342 sum -24.401 13.263 -1.492 27.813 Atomic orbital electron populations 1.21859 0.93636 1.02519 1.02006 1.22279 0.96608 0.99194 0.94018 0.89553 1.22988 0.95933 1.00381 0.97628 1.22755 0.97020 1.03016 0.79969 1.48342 1.28679 1.42917 1.12287 1.19798 0.83376 0.80116 0.85896 1.90746 1.70213 1.63182 1.15704 1.19959 0.84231 0.80664 0.86946 1.90713 1.69045 1.62965 1.15449 1.42871 1.24439 1.43128 1.16655 1.17295 0.87168 1.06980 0.94470 1.20719 0.98027 0.96210 0.93628 1.20127 0.91999 1.07710 1.00054 1.19189 0.86810 0.92106 0.91567 1.83570 1.22059 1.68807 1.37318 1.20776 0.94797 1.37350 0.93648 0.87527 1.24484 0.94197 0.95450 0.99872 1.69640 1.07451 1.38932 1.35387 0.86170 0.79248 0.78238 0.83218 1.19829 1.20784 1.18272 1.21105 0.99465 1.06113 0.95958 1.20578 0.91340 0.99547 0.98864 1.21705 0.85260 0.92951 0.96755 0.90336 1.22227 0.98217 0.99749 1.02072 0.92178 0.92223 0.91820 0.90374 0.89567 0.90732 0.87774 0.74874 0.85129 0.85961 0.90968 0.84290 0.86572 0.91137 0.91131 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 7.99 37.16 0.30 -0.33 16 2 C -0.10 -0.59 3.47 -88.79 -0.31 -0.90 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -0.80 6.54 -24.46 -0.16 -0.96 16 5 C 0.09 0.85 6.08 -2.40 -0.01 0.84 16 6 N -0.59 -6.22 3.08 -163.43 -0.50 -6.72 16 7 C 0.52 6.84 7.69 -11.65 -0.09 6.75 16 8 O -0.52 -7.53 15.38 5.49 0.08 -7.44 16 9 C 0.50 7.19 7.69 -11.65 -0.09 7.10 16 10 O -0.51 -7.95 11.22 5.46 0.06 -7.89 16 11 N -0.63 -9.02 5.32 -10.27 -0.05 -9.08 16 12 C 0.03 0.57 6.29 -83.69 -0.53 0.04 16 13 C -0.07 -1.19 8.68 -39.40 -0.34 -1.54 16 14 C -0.18 -3.57 9.98 -39.42 -0.39 -3.97 16 15 C 0.16 3.54 6.65 -39.07 -0.26 3.28 16 16 O -0.21 -5.52 8.58 0.13 0.00 -5.52 16 17 C -0.39 -10.78 9.94 30.89 0.31 -10.47 16 18 H 0.11 2.98 5.43 -52.49 -0.28 2.70 16 19 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 20 N -0.88 -24.94 13.96 55.48 0.77 -24.17 16 21 Si 0.91 21.40 28.62 -169.99 -4.86 16.53 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 25 C -0.21 -4.32 9.16 -39.42 -0.36 -4.68 16 26 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 27 C 0.14 1.13 3.43 -66.96 -0.23 0.90 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 C -0.16 -1.31 7.93 37.16 0.29 -1.01 16 30 H 0.06 0.24 7.59 -51.93 -0.39 -0.15 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.30 6.61 -51.93 -0.34 -0.05 16 33 H 0.08 0.48 8.02 -51.93 -0.42 0.06 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.10 1.10 6.14 -51.93 -0.32 0.78 16 37 H 0.41 5.16 8.29 -40.82 -0.34 4.82 16 38 H 0.13 2.23 6.24 -52.48 -0.33 1.90 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.28 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.14 3.01 5.63 -52.49 -0.30 2.72 16 42 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.07 0.72 6.74 -51.93 -0.35 0.37 16 44 H 0.07 0.42 6.70 -51.93 -0.35 0.07 16 45 H 0.06 0.47 7.53 -51.93 -0.39 0.07 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -30.57 364.53 -7.27 -37.85 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.90 Total: 6.09 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.37 Total: -5.14 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.22 Total: -39.97 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.15 Total: -20.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.57 -7.27 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.147 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds