Wall clock time and date at job start Tue Mar 31 2020 17:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.63993 * 2 1 4 4 C 1.55158 * 110.71738 * 236.66875 * 2 1 3 5 5 C 1.55138 * 101.48556 * 205.96761 * 4 2 1 6 6 N 1.47428 * 104.71885 * 37.29093 * 5 4 2 7 7 C 1.34778 * 125.64453 * 155.82155 * 6 5 4 8 8 O 1.21363 * 120.00129 * 179.69602 * 7 6 5 9 9 C 1.49320 * 119.99752 * 359.69112 * 7 6 5 10 10 O 1.21390 * 120.00644 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99790 * 180.02562 * 9 7 6 12 12 C 1.39746 * 120.00264 * 184.51628 * 11 9 7 13 13 C 1.38995 * 120.00250 * 324.61151 * 12 11 9 14 14 C 1.37970 * 119.99148 * 179.74259 * 13 12 11 15 15 C 1.38936 * 120.00378 * 0.53284 * 14 13 12 16 16 O 1.35755 * 119.99352 * 179.76420 * 15 14 13 17 17 C 1.34797 * 117.00304 * 185.32480 * 16 15 14 18 18 H 1.07997 * 120.00198 * 354.95783 * 17 16 15 19 19 C 1.38660 * 120.00428 * 174.96512 * 17 16 15 20 20 N 1.31553 * 120.00415 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99562 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46941 * 90.00219 * 21 19 17 23 23 H 1.48497 * 109.47097 * 210.00223 * 21 19 17 24 24 H 1.48494 * 109.47293 * 330.00216 * 21 19 17 25 25 C 1.38931 * 120.01660 * 359.74264 * 15 14 13 26 26 C 1.37971 * 120.00586 * 359.97438 * 25 15 14 27 27 C 1.47020 * 108.70432 * 335.55420 * 6 5 4 28 28 H 1.09001 * 109.88167 * 241.86293 * 27 6 5 29 29 C 1.53001 * 109.87873 * 120.70360 * 27 6 5 30 30 H 1.09003 * 109.46625 * 296.85620 * 1 2 3 31 31 H 1.08992 * 109.47464 * 56.85495 * 1 2 3 32 32 H 1.09002 * 109.47083 * 176.86036 * 1 2 3 33 33 H 1.08999 * 111.00749 * 324.20442 * 4 2 1 34 34 H 1.09001 * 111.00949 * 88.02288 * 4 2 1 35 35 H 1.09007 * 110.49340 * 278.45321 * 5 4 2 36 36 H 1.08992 * 110.34597 * 156.05803 * 5 4 2 37 37 H 0.97001 * 119.99842 * 4.24018 * 11 9 7 38 38 H 1.08003 * 120.00697 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.99828 * 180.27668 * 14 13 12 40 40 H 0.96993 * 119.99984 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00206 * 179.97438 * 25 15 14 42 42 H 1.08002 * 120.00416 * 180.02562 * 26 25 15 43 43 H 1.09001 * 109.47108 * 61.45575 * 29 27 6 44 44 H 1.09005 * 109.47144 * 181.44838 * 29 27 6 45 45 H 1.08997 * 109.47324 * 301.45647 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7974 -1.2125 5 6 3.4666 -1.2467 -0.6842 6 7 3.2446 -1.5494 0.7415 7 6 3.9924 -2.3810 1.4936 8 8 3.7195 -2.5517 2.6638 9 6 5.1568 -3.0923 0.8871 10 8 5.4302 -2.9213 -0.2832 11 7 5.9044 -3.9243 1.6391 12 6 7.0488 -4.5167 1.0984 13 6 7.0709 -4.8925 -0.2396 14 6 8.2027 -5.4725 -0.7744 15 6 9.3164 -5.6909 0.0270 16 8 10.4283 -6.2660 -0.4984 17 6 11.4318 -6.5506 0.3555 18 1 11.3631 -6.2476 1.3898 19 6 12.5523 -7.2325 -0.0941 20 7 13.5319 -7.5098 0.7391 21 14 12.6710 -7.7571 -1.8830 22 1 13.3165 -6.6783 -2.6734 23 1 13.4823 -8.9969 -1.9824 24 1 11.3085 -8.0132 -2.4152 25 6 9.2927 -5.3206 1.3658 26 6 8.1632 -4.7352 1.8998 27 6 2.0761 -0.7891 1.2085 28 1 2.3742 -0.0990 1.9979 29 6 1.0051 -1.7493 1.7299 30 1 -0.3633 0.4643 0.9169 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 1.4452 -1.6559 -1.4348 34 1 2.1843 -0.1554 -2.0871 35 1 4.1947 -0.4427 -0.7923 36 1 3.8032 -2.1381 -1.2134 37 1 5.6503 -4.1088 2.5569 38 1 6.2038 -4.7264 -0.8616 39 1 8.2216 -5.7605 -1.8152 40 1 14.3155 -7.9871 0.4247 41 1 10.1584 -5.4909 1.9887 42 1 8.1449 -4.4470 2.9405 43 1 1.4020 -2.3122 2.5747 44 1 0.1321 -1.1805 2.0504 45 1 0.7181 -2.4391 0.9363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116224854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:29 Heat of formation + Delta-G solvation = -73.902380 kcal Electronic energy + Delta-G solvation = -27842.586227 eV Core-core repulsion = 23825.665235 eV Total energy + Delta-G solvation = -4016.920992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25779 -41.11802 -40.28784 -38.94907 -38.30506 -35.65811 -34.39561 -34.14640 -32.17610 -31.96669 -30.17231 -28.90493 -27.37875 -26.38697 -25.36952 -24.02722 -23.69914 -22.48297 -21.29405 -20.13023 -19.83627 -19.28148 -19.08804 -18.15405 -17.74406 -17.31339 -16.71621 -16.60121 -16.19757 -15.84126 -15.63855 -15.58867 -15.21107 -14.93635 -14.64501 -14.51048 -14.27896 -14.18235 -14.09373 -13.80696 -13.61639 -13.47637 -13.32628 -13.09326 -12.87119 -12.77120 -12.69478 -12.49092 -12.29995 -11.99041 -11.75315 -11.51108 -11.45198 -11.39223 -11.18637 -10.75217 -10.58055 -9.92921 -9.89729 -8.78197 -8.49498 -6.21175 0.02000 0.45917 0.63216 1.13801 1.33466 1.37213 1.53181 2.02065 2.28816 2.36141 2.73145 2.99570 3.12816 3.16700 3.53856 3.58709 3.87679 3.97963 4.05684 4.16443 4.28991 4.36427 4.41052 4.47965 4.55587 4.59988 4.60749 4.78113 4.81766 4.88258 4.94542 4.99286 5.10775 5.11657 5.12260 5.14735 5.27008 5.29675 5.34847 5.40784 5.48428 5.52565 5.73439 5.81700 5.99350 6.12520 6.18711 6.58858 6.83850 6.84586 7.56990 8.61445 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002140 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.125754 B =13080.180374 C =13719.985433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.097 0.903 4 C -0.122 4.122 5 C 0.088 3.912 6 N -0.583 5.583 7 C 0.524 3.476 8 O -0.540 6.540 9 C 0.503 3.497 10 O -0.517 6.517 11 N -0.623 5.623 12 C 0.059 3.941 13 C -0.067 4.067 14 C -0.173 4.173 15 C 0.120 3.880 16 O -0.240 6.240 17 C -0.399 4.399 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.262 1.262 25 C -0.214 4.214 26 C -0.079 4.079 27 C 0.127 3.873 28 H 0.075 0.925 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.427 0.573 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.299 15.436 -2.183 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.160 4.160 5 C -0.034 4.034 6 N -0.316 5.316 7 C 0.307 3.693 8 O -0.419 6.419 9 C 0.286 3.714 10 O -0.393 6.393 11 N -0.270 5.270 12 C -0.034 4.034 13 C -0.087 4.087 14 C -0.193 4.193 15 C 0.070 3.930 16 O -0.147 6.147 17 C -0.475 4.475 18 H 0.104 0.896 19 C -0.188 4.188 20 N -0.560 5.560 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.234 4.234 26 C -0.099 4.099 27 C 0.025 3.975 28 H 0.093 0.907 29 C -0.217 4.217 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.266 0.734 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.167 0.833 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.988 15.297 -2.522 31.995 hybrid contribution 0.900 -0.553 0.401 1.130 sum -27.089 14.744 -2.121 30.914 Atomic orbital electron populations 1.21854 0.92274 1.02741 1.02937 1.22288 0.97578 0.99105 0.92216 0.88482 1.22985 0.93836 1.00854 0.98339 1.22877 0.99100 1.02405 0.78986 1.48512 1.28517 1.41702 1.12854 1.19466 0.83321 0.80736 0.85800 1.90747 1.70680 1.64135 1.16300 1.20296 0.84290 0.80207 0.86654 1.90716 1.69346 1.63190 1.16049 1.42833 1.23611 1.43203 1.17352 1.17402 0.87596 1.04329 0.94042 1.20920 0.97801 0.95681 0.94277 1.20342 0.91480 1.06948 1.00519 1.19650 0.87069 0.93347 0.92889 1.83518 1.22807 1.71252 1.37114 1.20734 0.95836 1.37654 0.93308 0.89623 1.25264 0.93880 0.95698 1.03944 1.69719 1.08332 1.40781 1.37201 0.85244 0.79025 0.78384 0.78273 1.19172 1.19334 1.18603 1.21131 1.00202 1.06657 0.95430 1.20804 0.90134 0.98412 1.00527 1.21983 0.84509 0.92960 0.98035 0.90664 1.22180 0.98733 0.99686 1.01052 0.91551 0.91025 0.91988 0.90137 0.87543 0.90592 0.89310 0.73437 0.83622 0.84755 0.90559 0.85928 0.83293 0.93700 0.88928 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 7.99 71.98 0.57 -0.17 16 2 C -0.09 -0.77 3.47 -9.61 -0.03 -0.81 16 3 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.12 -1.12 6.54 32.07 0.21 -0.91 16 5 C 0.09 1.40 6.08 86.93 0.53 1.93 16 6 N -0.58 -11.27 3.08 -789.32 -2.43 -13.70 16 7 C 0.52 12.85 7.69 87.23 0.67 13.52 16 8 O -0.54 -14.89 15.38 -3.29 -0.05 -14.94 16 9 C 0.50 13.51 7.69 87.23 0.67 14.18 16 10 O -0.52 -15.25 11.22 -3.37 -0.04 -15.29 16 11 N -0.62 -16.60 5.32 -304.74 -1.62 -18.22 16 12 C 0.06 1.92 6.29 38.24 0.24 2.16 16 13 C -0.07 -2.31 8.68 22.39 0.19 -2.11 16 14 C -0.17 -6.80 9.98 22.37 0.22 -6.58 16 15 C 0.12 5.55 6.65 22.60 0.15 5.70 16 16 O -0.24 -12.82 8.58 -22.45 -0.19 -13.01 16 17 C -0.40 -23.06 9.94 67.92 0.68 -22.39 16 18 H 0.09 5.12 5.43 -2.91 -0.02 5.11 16 19 C 0.01 0.63 5.49 84.84 0.47 1.09 16 20 N -0.92 -54.26 13.96 21.61 0.30 -53.96 16 21 Si 0.97 45.01 28.62 68.60 1.96 46.97 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.21 -9.12 9.16 22.37 0.20 -8.91 16 26 C -0.08 -2.68 9.96 22.39 0.22 -2.45 16 27 C 0.13 1.82 3.43 45.34 0.16 1.98 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 C -0.16 -2.20 7.93 71.98 0.57 -1.63 16 30 H 0.07 0.30 7.59 -2.39 -0.02 0.28 16 31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.37 6.61 -2.39 -0.02 0.36 16 33 H 0.08 0.73 8.02 -2.39 -0.02 0.71 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.09 1.72 6.14 -2.39 -0.01 1.71 16 37 H 0.43 9.62 8.29 -92.71 -0.77 8.85 16 38 H 0.15 4.64 6.24 -2.91 -0.02 4.62 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 5.61 5.63 -2.91 -0.02 5.60 16 42 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.04 0.87 6.74 -2.39 -0.02 0.85 16 44 H 0.09 0.86 6.70 -2.38 -0.02 0.84 16 45 H 0.06 0.82 7.53 -2.39 -0.02 0.80 16 Total: -1.00 -68.11 364.53 3.93 -64.19 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.27 Total: 23.34 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 5.73 Total: -5.38 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.75 Total: -85.87 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.28 Total: -43.25 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.96 Total: 46.97 kcal Total: -68.11 3.93 -64.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116224854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.716 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds