Wall clock time and date at job start Tue Mar 31 2020 17:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.56047 * 2 1 4 4 C 1.53074 * 117.51753 * 145.70096 * 2 1 3 5 5 C 1.52998 * 117.49941 * 214.31211 * 2 1 3 6 6 H 1.09003 * 117.50216 * 144.99249 * 5 2 1 7 7 C 1.53001 * 117.49657 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.47062 * 175.09028 * 7 5 2 9 9 C 1.34773 * 120.00154 * 180.02562 * 8 7 5 10 10 O 1.21355 * 119.99895 * 359.97438 * 9 8 7 11 11 C 1.49449 * 120.00252 * 179.97438 * 9 8 7 12 12 O 1.21355 * 119.99853 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00214 * 179.97438 * 11 9 8 14 14 C 1.46501 * 119.99937 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47146 * 180.02562 * 14 13 11 16 16 C 1.38322 * 119.96718 * 270.02584 * 15 14 13 17 17 C 1.38278 * 120.13646 * 179.97438 * 16 15 14 18 18 C 1.38118 * 120.07168 * 0.02562 * 17 16 15 19 19 C 1.38858 * 119.93004 * 359.78497 * 18 17 16 20 20 O 1.35746 * 120.07005 * 180.25802 * 19 18 17 21 21 C 1.34828 * 117.00187 * 354.66396 * 20 19 18 22 22 H 1.08005 * 120.00113 * 5.07388 * 21 20 19 23 23 C 1.38658 * 120.00325 * 185.07349 * 21 20 19 24 24 N 1.31559 * 119.99957 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99649 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47154 * 89.99927 * 25 23 21 27 27 H 1.48508 * 109.46936 * 209.99827 * 25 23 21 28 28 H 1.48500 * 109.47349 * 329.99390 * 25 23 21 29 29 C 1.38077 * 119.96070 * 90.00159 * 15 14 13 30 30 H 1.09003 * 109.47119 * 205.69000 * 1 2 3 31 31 H 1.09001 * 109.47019 * 325.68977 * 1 2 3 32 32 H 1.08993 * 109.47620 * 85.69000 * 1 2 3 33 33 H 1.09007 * 117.50756 * 0.02562 * 4 2 1 34 34 H 1.08994 * 117.51948 * 214.95452 * 4 2 1 35 35 H 1.09000 * 109.46982 * 55.09043 * 7 5 2 36 36 H 1.09000 * 109.47334 * 295.08600 * 7 5 2 37 37 H 0.97004 * 120.00040 * 359.97438 * 8 7 5 38 38 H 0.96993 * 120.00009 * 0.02562 * 13 11 9 39 39 H 1.09000 * 109.47004 * 60.00595 * 14 13 11 40 40 H 1.08992 * 109.47336 * 300.00314 * 14 13 11 41 41 H 1.07998 * 119.93357 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.96139 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.03421 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99831 * 180.02562 * 24 23 21 45 45 H 1.08000 * 120.04009 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 3.1713 -0.8750 -1.2687 7 6 1.3588 -2.1565 -1.4710 8 7 2.2058 -3.0722 -2.2392 9 6 1.6467 -4.0730 -2.9478 10 8 0.4416 -4.2159 -2.9491 11 6 2.5108 -5.0069 -3.7319 12 8 3.7158 -4.8637 -3.7309 13 7 1.9517 -6.0081 -4.4401 14 6 2.7987 -6.9231 -5.2092 15 6 1.9343 -7.9428 -5.9049 16 6 1.6225 -9.1321 -5.2710 17 6 0.8292 -10.0700 -5.9059 18 6 0.3460 -9.8220 -7.1758 19 6 0.6539 -8.6274 -7.8132 20 8 0.1761 -8.3785 -9.0592 21 6 -0.4984 -9.3754 -9.6666 22 1 -0.7088 -10.2896 -9.1313 23 6 -0.9221 -9.2272 -10.9785 24 7 -1.5808 -10.1998 -11.5710 25 14 -0.5576 -7.6464 -11.9046 26 1 0.7476 -7.7708 -12.6017 27 1 -1.6298 -7.3985 -12.9019 28 1 -0.5011 -6.5131 -10.9466 29 6 1.4539 -7.6887 -7.1742 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3634 0.0772 -1.0247 33 1 1.6123 -1.8596 1.2680 34 1 3.1725 -0.8760 1.2679 35 1 0.6683 -1.6488 -2.1445 36 1 0.7938 -2.7205 -0.7288 37 1 3.1691 -2.9578 -2.2384 38 1 0.9885 -6.1223 -4.4412 39 1 3.4898 -7.4307 -4.5362 40 1 3.3630 -6.3587 -5.9515 41 1 1.9995 -9.3285 -4.2782 42 1 0.5872 -10.9975 -5.4081 43 1 -0.2740 -10.5548 -7.6709 44 1 -1.8768 -10.0962 -12.4889 45 1 1.6976 -6.7600 -7.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117084580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:12 Heat of formation + Delta-G solvation = -51.535089 kcal Electronic energy + Delta-G solvation = -26571.261065 eV Core-core repulsion = 22555.309992 eV Total energy + Delta-G solvation = -4015.951074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.80582 -39.44859 -38.98863 -38.24495 -37.04316 -35.24342 -34.29799 -32.45345 -31.00741 -29.48657 -29.25990 -28.02222 -26.38825 -25.22534 -23.50640 -22.07985 -21.86704 -20.82159 -20.76464 -20.14396 -18.63342 -17.77010 -17.28887 -17.07304 -16.50868 -16.18895 -15.56716 -15.33140 -15.23550 -14.96319 -14.64099 -14.27441 -14.07963 -13.95925 -13.84807 -13.59153 -13.43232 -13.34875 -12.78983 -12.65407 -12.62832 -12.23076 -12.09721 -12.05096 -11.87782 -11.72257 -11.47144 -10.98188 -10.90157 -10.79526 -10.59584 -10.48483 -10.22191 -9.78883 -9.51542 -9.48031 -9.28589 -8.93975 -8.37584 -7.50664 -6.47296 -4.14662 1.27369 1.67566 2.11626 2.32473 3.06420 3.17346 3.19231 3.22725 3.37022 3.57058 4.05861 4.19079 4.26151 4.30471 4.35499 4.45987 4.60806 4.69283 4.81630 4.99549 5.05570 5.06323 5.22872 5.31039 5.33596 5.34758 5.35393 5.54004 5.55755 5.63202 5.67231 5.73139 5.80427 5.92595 5.97876 6.10396 6.13878 6.37894 6.63972 6.76685 6.95482 7.06703 7.17847 7.22454 7.47261 7.57862 7.71479 7.85115 7.96048 8.87463 9.48026 10.59992 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.001967 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.891279 B =14229.367529 C =15086.501757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.701 5.701 9 C 0.507 3.493 10 O -0.516 6.516 11 C 0.505 3.495 12 O -0.527 6.527 13 N -0.687 5.687 14 C 0.166 3.834 15 C -0.080 4.080 16 C -0.184 4.184 17 C -0.077 4.077 18 C -0.210 4.210 19 C 0.156 3.844 20 O -0.215 6.215 21 C -0.391 4.391 22 H 0.107 0.893 23 C 0.064 3.936 24 N -0.877 5.877 25 Si 0.905 3.095 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.259 1.259 29 C -0.169 4.169 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.280 0.720 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 16.180 22.123 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.190 4.190 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.355 5.355 9 C 0.288 3.712 10 O -0.391 6.391 11 C 0.285 3.715 12 O -0.404 6.404 13 N -0.340 5.340 14 C 0.044 3.956 15 C -0.080 4.080 16 C -0.204 4.204 17 C -0.095 4.095 18 C -0.229 4.229 19 C 0.104 3.896 20 O -0.120 6.120 21 C -0.467 4.467 22 H 0.124 0.876 23 C -0.139 4.139 24 N -0.514 5.514 25 Si 0.731 3.269 26 H -0.198 1.198 27 H -0.207 1.207 28 H -0.183 1.183 29 C -0.189 4.189 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.253 0.747 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.535 16.289 21.749 28.198 hybrid contribution 0.058 0.370 -0.552 0.667 sum 7.594 16.659 21.197 28.009 Atomic orbital electron populations 1.21412 0.92472 1.02376 1.02363 1.22398 0.95720 0.94356 1.03491 0.87409 1.23265 1.02831 1.01584 0.93238 1.22537 1.01630 1.00181 0.94613 0.86891 1.20983 0.92238 0.89431 0.94695 1.45730 1.11941 1.29658 1.48157 1.20221 0.88213 0.82166 0.80644 1.90797 1.14305 1.71821 1.62199 1.20025 0.88039 0.82355 0.81072 1.90757 1.14193 1.72300 1.63182 1.45985 1.12496 1.28705 1.46781 1.20311 0.91666 0.89263 0.94362 1.19191 0.99565 0.95129 0.94140 1.20552 1.04513 0.95109 1.00192 1.20808 0.96223 0.98190 0.94314 1.21382 1.05933 0.99124 0.96473 1.19049 0.91865 0.92900 0.85829 1.83574 1.63381 1.40449 1.24557 1.20762 1.33038 0.96055 0.96815 0.87565 1.24474 0.95432 0.98555 0.95479 1.69643 1.36100 1.31894 1.13768 0.86181 0.78250 0.83001 0.79480 1.19832 1.20720 1.18335 1.20081 1.02887 1.00303 0.95604 0.92189 0.91856 0.91771 0.88364 0.88478 0.90390 0.90706 0.75035 0.74694 0.90143 0.90157 0.87189 0.86866 0.84749 0.90959 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.20 37.16 0.34 -0.30 16 2 C -0.14 -0.71 6.41 -90.58 -0.58 -1.29 16 3 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.17 -0.86 9.83 -26.69 -0.26 -1.12 16 5 C -0.17 -0.96 5.85 -90.62 -0.53 -1.49 16 6 H 0.11 0.56 8.04 -51.93 -0.42 0.14 16 7 C 0.15 1.13 5.03 -4.04 -0.02 1.11 16 8 N -0.70 -6.32 5.55 -60.73 -0.34 -6.66 16 9 C 0.51 6.08 7.89 -11.59 -0.09 5.99 16 10 O -0.52 -7.42 16.48 5.49 0.09 -7.33 16 11 C 0.51 6.50 7.89 -11.59 -0.09 6.41 16 12 O -0.53 -7.53 16.48 5.49 0.09 -7.44 16 13 N -0.69 -8.85 5.54 -61.91 -0.34 -9.19 16 14 C 0.17 2.19 5.80 -5.19 -0.03 2.16 16 15 C -0.08 -1.25 5.25 -104.65 -0.55 -1.80 16 16 C -0.18 -2.84 9.70 -39.54 -0.38 -3.23 16 17 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 18 C -0.21 -4.30 9.17 -39.40 -0.36 -4.66 16 19 C 0.16 3.44 6.65 -39.10 -0.26 3.18 16 20 O -0.21 -5.51 8.59 0.07 0.00 -5.51 16 21 C -0.39 -10.78 9.95 30.89 0.31 -10.47 16 22 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 23 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 24 N -0.88 -24.92 13.96 55.48 0.77 -24.14 16 25 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.17 -3.15 9.65 -39.39 -0.38 -3.53 16 30 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.34 7.83 -51.93 -0.41 -0.07 16 33 H 0.10 0.50 7.94 -51.93 -0.41 0.09 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.64 7.77 -51.93 -0.40 0.23 16 36 H 0.07 0.59 7.87 -51.93 -0.41 0.19 16 37 H 0.41 3.19 7.87 -40.82 -0.32 2.87 16 38 H 0.42 5.39 7.94 -40.82 -0.32 5.07 16 39 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 40 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 44 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -30.65 387.63 -8.33 -38.97 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.20 Total: 8.01 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.38 Total: -9.06 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.09 Total: -40.00 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.65 -8.33 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.561 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds