Wall clock time and date at job start Tue Mar 31 2020 17:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.56047 * 2 1 4 4 C 1.53074 * 117.51753 * 145.70096 * 2 1 3 5 5 C 1.52998 * 117.49941 * 214.31211 * 2 1 3 6 6 H 1.09003 * 117.50216 * 144.99249 * 5 2 1 7 7 C 1.53001 * 117.49657 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.47062 * 175.09028 * 7 5 2 9 9 C 1.34773 * 120.00154 * 180.02562 * 8 7 5 10 10 O 1.21355 * 119.99895 * 359.97438 * 9 8 7 11 11 C 1.49449 * 120.00252 * 179.97438 * 9 8 7 12 12 O 1.21355 * 119.99853 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00214 * 179.97438 * 11 9 8 14 14 C 1.46501 * 119.99937 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47146 * 180.02562 * 14 13 11 16 16 C 1.38322 * 119.96718 * 270.02584 * 15 14 13 17 17 C 1.38278 * 120.13646 * 179.97438 * 16 15 14 18 18 C 1.38118 * 120.07168 * 0.02562 * 17 16 15 19 19 C 1.38858 * 119.93004 * 359.78497 * 18 17 16 20 20 O 1.35746 * 120.07005 * 180.25802 * 19 18 17 21 21 C 1.34828 * 117.00187 * 354.66396 * 20 19 18 22 22 H 1.08005 * 120.00113 * 5.07388 * 21 20 19 23 23 C 1.38658 * 120.00325 * 185.07349 * 21 20 19 24 24 N 1.31559 * 119.99957 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99649 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47154 * 89.99927 * 25 23 21 27 27 H 1.48508 * 109.46936 * 209.99827 * 25 23 21 28 28 H 1.48500 * 109.47349 * 329.99390 * 25 23 21 29 29 C 1.38077 * 119.96070 * 90.00159 * 15 14 13 30 30 H 1.09003 * 109.47119 * 205.69000 * 1 2 3 31 31 H 1.09001 * 109.47019 * 325.68977 * 1 2 3 32 32 H 1.08993 * 109.47620 * 85.69000 * 1 2 3 33 33 H 1.09007 * 117.50756 * 0.02562 * 4 2 1 34 34 H 1.08994 * 117.51948 * 214.95452 * 4 2 1 35 35 H 1.09000 * 109.46982 * 55.09043 * 7 5 2 36 36 H 1.09000 * 109.47334 * 295.08600 * 7 5 2 37 37 H 0.97004 * 120.00040 * 359.97438 * 8 7 5 38 38 H 0.96993 * 120.00009 * 0.02562 * 13 11 9 39 39 H 1.09000 * 109.47004 * 60.00595 * 14 13 11 40 40 H 1.08992 * 109.47336 * 300.00314 * 14 13 11 41 41 H 1.07998 * 119.93357 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.96139 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.03421 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99831 * 180.02562 * 24 23 21 45 45 H 1.08000 * 120.04009 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 3.1713 -0.8750 -1.2687 7 6 1.3588 -2.1565 -1.4710 8 7 2.2058 -3.0722 -2.2392 9 6 1.6467 -4.0730 -2.9478 10 8 0.4416 -4.2159 -2.9491 11 6 2.5108 -5.0069 -3.7319 12 8 3.7158 -4.8637 -3.7309 13 7 1.9517 -6.0081 -4.4401 14 6 2.7987 -6.9231 -5.2092 15 6 1.9343 -7.9428 -5.9049 16 6 1.6225 -9.1321 -5.2710 17 6 0.8292 -10.0700 -5.9059 18 6 0.3460 -9.8220 -7.1758 19 6 0.6539 -8.6274 -7.8132 20 8 0.1761 -8.3785 -9.0592 21 6 -0.4984 -9.3754 -9.6666 22 1 -0.7088 -10.2896 -9.1313 23 6 -0.9221 -9.2272 -10.9785 24 7 -1.5808 -10.1998 -11.5710 25 14 -0.5576 -7.6464 -11.9046 26 1 0.7476 -7.7708 -12.6017 27 1 -1.6298 -7.3985 -12.9019 28 1 -0.5011 -6.5131 -10.9466 29 6 1.4539 -7.6887 -7.1742 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3634 0.0772 -1.0247 33 1 1.6123 -1.8596 1.2680 34 1 3.1725 -0.8760 1.2679 35 1 0.6683 -1.6488 -2.1445 36 1 0.7938 -2.7205 -0.7288 37 1 3.1691 -2.9578 -2.2384 38 1 0.9885 -6.1223 -4.4412 39 1 3.4898 -7.4307 -4.5362 40 1 3.3630 -6.3587 -5.9515 41 1 1.9995 -9.3285 -4.2782 42 1 0.5872 -10.9975 -5.4081 43 1 -0.2740 -10.5548 -7.6709 44 1 -1.8768 -10.0962 -12.4889 45 1 1.6976 -6.7600 -7.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117084580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:10 Heat of formation + Delta-G solvation = -71.946133 kcal Electronic energy + Delta-G solvation = -26572.146155 eV Core-core repulsion = 22555.309992 eV Total energy + Delta-G solvation = -4016.836163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78581 -40.95621 -39.89054 -38.95869 -38.57798 -36.27378 -35.24851 -34.45929 -32.34917 -31.02797 -29.78044 -28.73469 -27.61681 -27.03096 -24.51572 -23.33046 -22.52153 -22.30561 -21.58992 -20.89238 -19.79578 -19.43950 -18.69625 -18.10058 -17.27895 -17.10180 -16.90391 -16.64780 -16.48694 -15.90808 -15.87478 -15.66553 -15.49444 -15.02583 -14.81759 -14.66100 -14.49319 -14.28196 -14.16338 -13.88023 -13.84374 -13.44031 -13.13880 -13.11756 -12.88209 -12.59143 -12.48686 -12.44714 -12.40627 -12.16564 -11.95563 -11.33933 -11.07172 -11.03150 -10.92341 -10.67989 -10.35806 -10.23742 -9.81590 -9.14000 -8.50887 -6.23683 0.28410 0.29382 0.63227 1.31011 1.32424 1.36934 1.50957 2.09228 2.26857 2.52130 2.76642 2.86778 2.98045 3.13530 3.42197 3.59873 3.70462 3.88150 3.91472 4.04211 4.21456 4.24644 4.38422 4.43645 4.46996 4.54786 4.59969 4.64863 4.67739 4.89431 4.90101 4.92917 4.97605 5.05563 5.07079 5.17053 5.22415 5.27878 5.35857 5.42480 5.59870 5.66623 5.73085 5.86350 5.88700 6.17778 6.29123 6.66211 6.83472 6.88552 7.57041 8.60430 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.001967 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.891279 B =14229.367529 C =15086.501757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.140 4.140 3 H 0.118 0.882 4 C -0.170 4.170 5 C -0.174 4.174 6 H 0.123 0.877 7 C 0.149 3.851 8 N -0.685 5.685 9 C 0.508 3.492 10 O -0.545 6.545 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.687 5.687 14 C 0.171 3.829 15 C -0.067 4.067 16 C -0.157 4.157 17 C -0.075 4.075 18 C -0.227 4.227 19 C 0.117 3.883 20 O -0.245 6.245 21 C -0.399 4.399 22 H 0.083 0.917 23 C 0.011 3.989 24 N -0.921 5.921 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.268 1.268 28 H -0.264 1.264 29 C -0.168 4.168 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.421 0.579 38 H 0.417 0.583 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.110 0.890 44 H 0.285 0.715 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.722 17.922 24.852 32.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 H 0.136 0.864 4 C -0.206 4.206 5 C -0.193 4.193 6 H 0.140 0.860 7 C 0.027 3.973 8 N -0.338 5.338 9 C 0.288 3.712 10 O -0.423 6.423 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.339 5.339 14 C 0.049 3.951 15 C -0.067 4.067 16 C -0.176 4.176 17 C -0.093 4.093 18 C -0.246 4.246 19 C 0.068 3.932 20 O -0.152 6.152 21 C -0.475 4.475 22 H 0.101 0.899 23 C -0.188 4.188 24 N -0.562 5.562 25 Si 0.791 3.209 26 H -0.191 1.191 27 H -0.193 1.193 28 H -0.188 1.188 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.259 0.741 38 H 0.253 0.747 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.633 18.048 24.536 31.946 hybrid contribution -0.431 -0.171 -1.014 1.115 sum 9.202 17.877 23.522 30.945 Atomic orbital electron populations 1.21432 0.92694 1.02558 1.02166 1.22481 0.95635 0.94730 1.02989 0.86400 1.23324 1.03248 1.01389 0.92678 1.22492 1.01762 1.00022 0.94993 0.85951 1.21057 0.92411 0.89484 0.94386 1.45744 1.12551 1.28649 1.46874 1.20103 0.87682 0.82569 0.80838 1.90793 1.15278 1.72738 1.63464 1.20097 0.87848 0.82200 0.80809 1.90756 1.14686 1.72621 1.63709 1.45921 1.12478 1.28766 1.46705 1.20300 0.91179 0.88832 0.94761 1.19457 0.98495 0.95917 0.92853 1.21077 1.01624 0.93658 1.01247 1.21158 0.95550 0.99859 0.92748 1.21419 1.06546 0.98447 0.98194 1.19595 0.93606 0.94704 0.85295 1.83518 1.65290 1.40002 1.26432 1.20703 1.33504 0.96049 0.97226 0.89912 1.25258 0.95554 1.01705 0.96293 1.69725 1.38208 1.33820 1.14436 0.85244 0.78592 0.78887 0.78164 1.19073 1.19296 1.18825 1.20315 1.02058 0.99793 0.96644 0.92576 0.91061 0.92270 0.88581 0.87425 0.91013 0.91049 0.74095 0.74660 0.88019 0.89811 0.83031 0.83761 0.87181 0.90584 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.20 71.98 0.66 -0.48 16 2 C -0.14 -1.13 6.41 -10.77 -0.07 -1.20 16 3 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.17 -1.33 9.83 30.62 0.30 -1.03 16 5 C -0.17 -1.60 5.85 -10.79 -0.06 -1.66 16 6 H 0.12 0.91 8.04 -2.39 -0.02 0.89 16 7 C 0.15 2.04 5.03 86.38 0.43 2.48 16 8 N -0.68 -11.09 5.55 -464.40 -2.58 -13.66 16 9 C 0.51 11.29 7.89 87.27 0.69 11.98 16 10 O -0.55 -15.04 16.48 -3.26 -0.05 -15.09 16 11 C 0.51 11.85 7.89 87.27 0.69 12.54 16 12 O -0.54 -13.89 16.48 -3.26 -0.05 -13.94 16 13 N -0.69 -15.71 5.54 -468.14 -2.59 -18.31 16 14 C 0.17 3.88 5.80 85.63 0.50 4.38 16 15 C -0.07 -1.88 5.25 -19.88 -0.10 -1.99 16 16 C -0.16 -4.20 9.70 22.30 0.22 -3.98 16 17 C -0.08 -2.37 10.04 22.25 0.22 -2.15 16 18 C -0.23 -9.48 9.17 22.39 0.21 -9.27 16 19 C 0.12 5.28 6.65 22.58 0.15 5.43 16 20 O -0.24 -13.08 8.59 -22.68 -0.19 -13.28 16 21 C -0.40 -23.19 9.95 67.92 0.68 -22.52 16 22 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 23 C 0.01 0.60 5.49 84.83 0.47 1.07 16 24 N -0.92 -54.70 13.96 21.61 0.30 -54.39 16 25 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 29 C -0.17 -6.12 9.65 22.39 0.22 -5.90 16 30 H 0.06 0.52 7.90 -2.39 -0.02 0.50 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.57 7.83 -2.39 -0.02 0.55 16 33 H 0.10 0.81 7.94 -2.38 -0.02 0.79 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 1.10 7.77 -2.39 -0.02 1.08 16 36 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 37 H 0.42 5.55 7.87 -92.71 -0.73 4.82 16 38 H 0.42 9.78 7.94 -92.71 -0.74 9.04 16 39 H 0.10 1.97 8.09 -2.39 -0.02 1.95 16 40 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 44 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -69.14 387.63 1.55 -67.59 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.43 Total: 26.09 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.19 Total: -12.31 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -4.87 Total: -86.36 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.30 Total: -42.32 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Total: -69.14 1.55 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.360 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds