Wall clock time and date at job start Tue Mar 31 2020 17:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 115.56361 * 2 1 4 4 C 1.53001 * 117.49811 * 214.30086 * 2 1 3 5 5 C 1.52992 * 60.00252 * 252.51569 * 4 2 1 6 6 H 1.09005 * 117.49931 * 252.48771 * 5 4 2 7 7 C 1.53004 * 117.50233 * 107.49358 * 5 4 2 8 8 N 1.46497 * 109.47449 * 116.38600 * 7 5 4 9 9 C 1.34776 * 120.00101 * 180.02562 * 8 7 5 10 10 O 1.21351 * 119.99727 * 359.97438 * 9 8 7 11 11 C 1.49442 * 120.00067 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00206 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00067 * 180.02562 * 11 9 8 14 14 C 1.46510 * 120.00295 * 179.97438 * 13 11 9 15 15 C 1.50695 * 109.47363 * 179.97438 * 14 13 11 16 16 C 1.38319 * 119.96484 * 89.99682 * 15 14 13 17 17 C 1.38277 * 120.13957 * 180.02562 * 16 15 14 18 18 C 1.38120 * 120.06985 * 359.95908 * 17 16 15 19 19 C 1.38863 * 119.92857 * 0.02562 * 18 17 16 20 20 O 1.35752 * 120.06612 * 179.72724 * 19 18 17 21 21 C 1.34824 * 117.00135 * 354.44967 * 20 19 18 22 22 H 1.08003 * 120.00008 * 5.05852 * 21 20 19 23 23 C 1.38655 * 120.00042 * 185.04935 * 21 20 19 24 24 N 1.31557 * 119.99847 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47114 * 90.00205 * 25 23 21 27 27 H 1.48500 * 109.47035 * 210.00163 * 25 23 21 28 28 H 1.48497 * 109.47245 * 330.00331 * 25 23 21 29 29 C 1.38071 * 119.96682 * 270.00208 * 15 14 13 30 30 H 1.08994 * 109.46827 * 274.31481 * 1 2 3 31 31 H 1.09003 * 109.46739 * 34.31616 * 1 2 3 32 32 H 1.09004 * 109.46785 * 154.31336 * 1 2 3 33 33 H 1.09004 * 117.49428 * 145.01999 * 4 2 1 34 34 H 1.08997 * 117.50052 * 0.02562 * 4 2 1 35 35 H 1.09005 * 109.46466 * 356.38792 * 7 5 4 36 36 H 1.08995 * 109.47319 * 236.39394 * 7 5 4 37 37 H 0.97002 * 119.99591 * 0.02562 * 8 7 5 38 38 H 0.96999 * 120.00080 * 359.97438 * 13 11 9 39 39 H 1.09000 * 109.46637 * 59.99594 * 14 13 11 40 40 H 1.08998 * 109.46510 * 300.00271 * 14 13 11 41 41 H 1.08006 * 119.93444 * 0.03085 * 16 15 14 42 42 H 1.08001 * 119.96856 * 179.97438 * 17 16 15 43 43 H 1.08002 * 120.03597 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99615 * 180.02562 * 24 23 21 45 45 H 1.08007 * 120.03742 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2364 -1.1210 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3588 -2.1561 1.4717 8 7 2.2057 -3.0704 2.2418 9 6 1.6466 -4.0712 2.9504 10 8 0.4416 -4.2147 2.9509 11 6 2.5104 -5.0035 3.7365 12 8 3.7154 -4.8597 3.7364 13 7 1.9514 -6.0047 4.4447 14 6 2.7983 -6.9190 5.2149 15 6 1.9339 -7.9389 5.9103 16 6 1.6237 -9.1287 5.2768 17 6 0.8304 -10.0668 5.9114 18 6 0.3459 -9.8186 7.1808 19 6 0.6558 -8.6252 7.8195 20 8 0.1765 -8.3759 9.0649 21 6 -0.6868 -9.2745 9.5797 22 1 -0.9043 -10.1847 9.0406 23 6 -1.2952 -9.0301 10.8015 24 7 -1.0305 -7.9213 11.4580 25 14 -2.4908 -10.2754 11.5151 26 1 -1.7491 -11.2460 12.3595 27 1 -3.5032 -9.5716 12.3428 28 1 -3.1704 -10.9985 10.4105 29 6 1.4523 -7.6846 7.1790 30 1 -0.3633 0.0773 1.0247 31 1 -0.3633 0.8488 -0.5794 32 1 -0.3633 -0.9262 -0.4455 33 1 3.1716 -0.8753 -1.2681 34 1 1.6113 -1.8585 -1.2683 35 1 0.7948 -2.7214 0.7297 36 1 0.6674 -1.6481 2.1439 37 1 3.1689 -2.9553 2.2417 38 1 0.9883 -6.1199 4.4445 39 1 3.3617 -6.3538 5.9573 40 1 3.4902 -7.4264 4.5426 41 1 2.0019 -9.3256 4.2845 42 1 0.5895 -10.9948 5.4140 43 1 -0.2734 -10.5519 7.6760 44 1 -1.4559 -7.7505 12.3130 45 1 1.6944 -6.7551 7.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117084581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:22 Heat of formation + Delta-G solvation = -53.396200 kcal Electronic energy + Delta-G solvation = -26529.920685 eV Core-core repulsion = 22513.888907 eV Total energy + Delta-G solvation = -4016.031778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 6.43 seconds Orbital eigenvalues (eV) -40.74116 -39.32109 -38.89779 -38.18657 -36.86610 -35.16796 -34.22866 -32.34500 -30.91347 -29.27686 -29.15843 -27.96810 -26.33935 -25.26784 -23.43578 -22.04053 -21.73902 -20.89331 -20.72596 -20.10222 -18.62244 -17.62151 -17.20431 -16.96262 -16.45571 -16.12617 -15.49491 -15.22872 -15.11118 -14.83758 -14.47426 -14.39694 -14.20698 -13.84865 -13.71710 -13.61646 -13.39357 -13.27122 -12.76049 -12.62890 -12.45726 -12.21380 -12.01532 -11.81290 -11.69396 -11.68274 -11.39399 -10.96566 -10.84907 -10.72286 -10.55887 -10.48419 -10.44699 -9.73079 -9.46219 -9.42385 -9.20677 -8.90016 -8.27968 -7.34788 -6.49787 -4.09260 1.33888 1.77081 2.23645 2.39712 3.09868 3.11116 3.12810 3.15986 3.22236 3.63406 3.92243 4.09657 4.32036 4.34325 4.41359 4.54569 4.73366 4.85045 4.86525 5.05813 5.10168 5.19940 5.27242 5.34231 5.38373 5.38998 5.48281 5.57604 5.66667 5.67045 5.75647 5.83850 5.84036 5.97877 6.04797 6.19557 6.23409 6.52067 6.78888 6.82823 6.97529 7.14140 7.24503 7.29772 7.34399 7.64280 7.68578 7.92024 7.94156 8.95459 9.63649 10.67864 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.001886 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.041648 B =14840.624063 C =15700.844005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.701 5.701 9 C 0.507 3.493 10 O -0.516 6.516 11 C 0.505 3.495 12 O -0.528 6.528 13 N -0.686 5.686 14 C 0.166 3.834 15 C -0.077 4.077 16 C -0.193 4.193 17 C -0.076 4.076 18 C -0.223 4.223 19 C 0.150 3.850 20 O -0.175 6.175 21 C -0.393 4.393 22 H 0.093 0.907 23 C 0.040 3.960 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 C -0.168 4.168 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.413 0.587 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.625 10.830 -21.262 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.189 4.189 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.355 5.355 9 C 0.288 3.712 10 O -0.391 6.391 11 C 0.285 3.715 12 O -0.405 6.405 13 N -0.339 5.339 14 C 0.044 3.956 15 C -0.078 4.078 16 C -0.213 4.213 17 C -0.094 4.094 18 C -0.243 4.243 19 C 0.096 3.904 20 O -0.079 6.079 21 C -0.469 4.469 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.192 1.192 29 C -0.188 4.188 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.253 0.747 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.568 11.121 -20.855 24.282 hybrid contribution -0.556 -0.699 0.402 0.980 sum 5.012 10.421 -20.454 23.496 Atomic orbital electron populations 1.21414 0.92480 1.02351 1.02377 1.22387 0.95722 0.94358 1.03506 0.87420 1.23250 1.02821 1.01595 0.93265 1.22536 1.01633 1.00180 0.94577 0.86884 1.20977 0.92248 0.89465 0.94655 1.45724 1.11933 1.29720 1.48142 1.20229 0.88217 0.82152 0.80629 1.90795 1.14315 1.71781 1.62204 1.20014 0.88031 0.82357 0.81107 1.90752 1.14198 1.72282 1.63294 1.45993 1.12525 1.28679 1.46665 1.20319 0.91681 0.89289 0.94297 1.19191 0.99360 0.95014 0.94242 1.20477 1.05213 0.95375 1.00215 1.20746 0.96249 0.98031 0.94376 1.21258 1.07034 0.99124 0.96878 1.19314 0.92630 0.92554 0.85907 1.83980 1.53781 1.46907 1.23190 1.21328 1.21116 1.00394 1.04106 0.89004 1.25305 0.97907 0.97557 0.95725 1.70040 1.41233 1.23715 1.14484 0.85700 0.79267 0.79217 0.79185 1.19842 1.20215 1.19163 1.20085 1.03778 0.99819 0.95135 0.91752 0.91875 0.92198 0.88500 0.88380 0.90740 0.90385 0.75047 0.74690 0.90164 0.90247 0.87416 0.87187 0.85391 0.91934 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.19 37.16 0.34 -0.35 16 2 C -0.14 -0.76 6.41 -90.62 -0.58 -1.34 16 3 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.17 -0.92 9.82 -26.73 -0.26 -1.18 16 5 C -0.17 -1.02 5.85 -90.62 -0.53 -1.55 16 6 H 0.11 0.61 8.04 -51.93 -0.42 0.19 16 7 C 0.15 1.20 5.04 -4.04 -0.02 1.18 16 8 N -0.70 -6.71 5.55 -60.73 -0.34 -7.05 16 9 C 0.51 6.42 7.89 -11.59 -0.09 6.33 16 10 O -0.52 -7.77 16.48 5.50 0.09 -7.68 16 11 C 0.50 6.88 7.89 -11.59 -0.09 6.78 16 12 O -0.53 -7.90 16.48 5.50 0.09 -7.81 16 13 N -0.69 -9.46 5.54 -61.91 -0.34 -9.80 16 14 C 0.17 2.35 5.80 -5.19 -0.03 2.32 16 15 C -0.08 -1.30 5.25 -104.66 -0.55 -1.84 16 16 C -0.19 -3.14 9.70 -39.54 -0.38 -3.52 16 17 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 18 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16 19 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 20 O -0.18 -4.89 9.76 0.06 0.00 -4.89 16 21 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 22 H 0.09 2.32 5.20 -52.48 -0.27 2.04 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 25 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 28 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 29 C -0.17 -3.39 9.64 -39.40 -0.38 -3.77 16 30 H 0.06 0.36 7.83 -51.93 -0.41 -0.04 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.53 7.94 -51.93 -0.41 0.12 16 35 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 36 H 0.08 0.68 7.77 -51.93 -0.40 0.27 16 37 H 0.41 3.41 7.87 -40.82 -0.32 3.09 16 38 H 0.42 5.80 7.94 -40.82 -0.32 5.48 16 39 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -31.69 388.74 -8.49 -40.18 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.18 Total: 10.12 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.40 Total: -9.95 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.08 Total: -41.03 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.18 Total: -20.39 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.69 -8.49 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.216 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.43 seconds