Wall clock time and date at job start Tue Mar 31 2020 17:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 115.56361 * 2 1 4 4 C 1.53001 * 117.49811 * 214.30086 * 2 1 3 5 5 C 1.52992 * 60.00252 * 252.51569 * 4 2 1 6 6 H 1.09005 * 117.49931 * 252.48771 * 5 4 2 7 7 C 1.53004 * 117.50233 * 107.49358 * 5 4 2 8 8 N 1.46497 * 109.47449 * 116.38600 * 7 5 4 9 9 C 1.34776 * 120.00101 * 180.02562 * 8 7 5 10 10 O 1.21351 * 119.99727 * 359.97438 * 9 8 7 11 11 C 1.49442 * 120.00067 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00206 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00067 * 180.02562 * 11 9 8 14 14 C 1.46510 * 120.00295 * 179.97438 * 13 11 9 15 15 C 1.50695 * 109.47363 * 179.97438 * 14 13 11 16 16 C 1.38319 * 119.96484 * 89.99682 * 15 14 13 17 17 C 1.38277 * 120.13957 * 180.02562 * 16 15 14 18 18 C 1.38120 * 120.06985 * 359.95908 * 17 16 15 19 19 C 1.38863 * 119.92857 * 0.02562 * 18 17 16 20 20 O 1.35752 * 120.06612 * 179.72724 * 19 18 17 21 21 C 1.34824 * 117.00135 * 354.44967 * 20 19 18 22 22 H 1.08003 * 120.00008 * 5.05852 * 21 20 19 23 23 C 1.38655 * 120.00042 * 185.04935 * 21 20 19 24 24 N 1.31557 * 119.99847 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47114 * 90.00205 * 25 23 21 27 27 H 1.48500 * 109.47035 * 210.00163 * 25 23 21 28 28 H 1.48497 * 109.47245 * 330.00331 * 25 23 21 29 29 C 1.38071 * 119.96682 * 270.00208 * 15 14 13 30 30 H 1.08994 * 109.46827 * 274.31481 * 1 2 3 31 31 H 1.09003 * 109.46739 * 34.31616 * 1 2 3 32 32 H 1.09004 * 109.46785 * 154.31336 * 1 2 3 33 33 H 1.09004 * 117.49428 * 145.01999 * 4 2 1 34 34 H 1.08997 * 117.50052 * 0.02562 * 4 2 1 35 35 H 1.09005 * 109.46466 * 356.38792 * 7 5 4 36 36 H 1.08995 * 109.47319 * 236.39394 * 7 5 4 37 37 H 0.97002 * 119.99591 * 0.02562 * 8 7 5 38 38 H 0.96999 * 120.00080 * 359.97438 * 13 11 9 39 39 H 1.09000 * 109.46637 * 59.99594 * 14 13 11 40 40 H 1.08998 * 109.46510 * 300.00271 * 14 13 11 41 41 H 1.08006 * 119.93444 * 0.03085 * 16 15 14 42 42 H 1.08001 * 119.96856 * 179.97438 * 17 16 15 43 43 H 1.08002 * 120.03597 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99615 * 180.02562 * 24 23 21 45 45 H 1.08007 * 120.03742 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2364 -1.1210 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3588 -2.1561 1.4717 8 7 2.2057 -3.0704 2.2418 9 6 1.6466 -4.0712 2.9504 10 8 0.4416 -4.2147 2.9509 11 6 2.5104 -5.0035 3.7365 12 8 3.7154 -4.8597 3.7364 13 7 1.9514 -6.0047 4.4447 14 6 2.7983 -6.9190 5.2149 15 6 1.9339 -7.9389 5.9103 16 6 1.6237 -9.1287 5.2768 17 6 0.8304 -10.0668 5.9114 18 6 0.3459 -9.8186 7.1808 19 6 0.6558 -8.6252 7.8195 20 8 0.1765 -8.3759 9.0649 21 6 -0.6868 -9.2745 9.5797 22 1 -0.9043 -10.1847 9.0406 23 6 -1.2952 -9.0301 10.8015 24 7 -1.0305 -7.9213 11.4580 25 14 -2.4908 -10.2754 11.5151 26 1 -1.7491 -11.2460 12.3595 27 1 -3.5032 -9.5716 12.3428 28 1 -3.1704 -10.9985 10.4105 29 6 1.4523 -7.6846 7.1790 30 1 -0.3633 0.0773 1.0247 31 1 -0.3633 0.8488 -0.5794 32 1 -0.3633 -0.9262 -0.4455 33 1 3.1716 -0.8753 -1.2681 34 1 1.6113 -1.8585 -1.2683 35 1 0.7948 -2.7214 0.7297 36 1 0.6674 -1.6481 2.1439 37 1 3.1689 -2.9553 2.2417 38 1 0.9883 -6.1199 4.4445 39 1 3.3617 -6.3538 5.9573 40 1 3.4902 -7.4264 4.5426 41 1 2.0019 -9.3256 4.2845 42 1 0.5895 -10.9948 5.4140 43 1 -0.2734 -10.5519 7.6760 44 1 -1.4559 -7.7505 12.3130 45 1 1.6944 -6.7551 7.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117084581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:18 Heat of formation + Delta-G solvation = -75.036953 kcal Electronic energy + Delta-G solvation = -26530.859098 eV Core-core repulsion = 22513.888907 eV Total energy + Delta-G solvation = -4016.970191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -41.79176 -40.84585 -39.88170 -38.95911 -38.47532 -36.26796 -35.25245 -34.28987 -32.32255 -30.81576 -29.77965 -28.73549 -27.68606 -27.03775 -24.51046 -23.27453 -22.52428 -22.43751 -21.59821 -20.90668 -19.79039 -19.22892 -18.65762 -18.10912 -17.28168 -17.10907 -16.79609 -16.51655 -16.44331 -16.11289 -15.82107 -15.61515 -15.51700 -14.98971 -14.87219 -14.65398 -14.38976 -14.25437 -13.95933 -13.84963 -13.68499 -13.35889 -13.12119 -13.06938 -12.87946 -12.57099 -12.44583 -12.37287 -12.28355 -12.16704 -12.12205 -11.23528 -11.07362 -11.03240 -10.82138 -10.67925 -10.36888 -10.24332 -9.78146 -9.04566 -8.47498 -6.16012 0.28304 0.32000 0.69417 1.33691 1.35519 1.44999 1.52815 2.08198 2.17114 2.52869 2.79878 2.89429 3.16259 3.35797 3.41845 3.59697 3.78182 3.88361 3.91180 4.07715 4.21285 4.28810 4.38294 4.43566 4.50514 4.54521 4.59727 4.64678 4.71782 4.89242 4.92853 4.97435 4.99512 5.05271 5.05664 5.11485 5.22294 5.24267 5.27598 5.42475 5.60161 5.68205 5.70169 5.85875 6.01003 6.15421 6.28258 6.65117 6.87498 6.97221 7.77280 8.75544 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.001886 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.041648 B =14840.624063 C =15700.844005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 H 0.118 0.882 4 C -0.169 4.169 5 C -0.175 4.175 6 H 0.122 0.878 7 C 0.149 3.851 8 N -0.684 5.684 9 C 0.508 3.492 10 O -0.545 6.545 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.687 5.687 14 C 0.171 3.829 15 C -0.065 4.065 16 C -0.167 4.167 17 C -0.071 4.071 18 C -0.233 4.233 19 C 0.110 3.890 20 O -0.232 6.232 21 C -0.413 4.413 22 H 0.104 0.896 23 C -0.024 4.024 24 N -0.920 5.920 25 Si 1.019 2.981 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.252 1.252 29 C -0.180 4.180 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.421 0.579 38 H 0.416 0.584 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 9.988 -24.460 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 H 0.136 0.864 4 C -0.205 4.205 5 C -0.194 4.194 6 H 0.140 0.860 7 C 0.027 3.973 8 N -0.338 5.338 9 C 0.289 3.711 10 O -0.423 6.423 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.338 5.338 14 C 0.049 3.951 15 C -0.065 4.065 16 C -0.186 4.186 17 C -0.089 4.089 18 C -0.252 4.252 19 C 0.060 3.940 20 O -0.139 6.139 21 C -0.489 4.489 22 H 0.121 0.879 23 C -0.222 4.222 24 N -0.559 5.559 25 Si 0.838 3.162 26 H -0.188 1.188 27 H -0.198 1.198 28 H -0.175 1.175 29 C -0.200 4.200 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.259 0.741 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.442 10.285 -24.128 27.008 hybrid contribution -0.611 -0.379 1.034 1.260 sum 5.831 9.906 -23.094 25.797 Atomic orbital electron populations 1.21435 0.92699 1.02580 1.02141 1.22472 0.95639 0.94736 1.02962 0.86383 1.23312 1.03258 1.01361 0.92602 1.22488 1.01759 1.00065 0.95039 0.85983 1.21061 0.92423 0.89524 0.94337 1.45737 1.12563 1.28655 1.46813 1.20079 0.87659 0.82576 0.80835 1.90790 1.15272 1.72719 1.63475 1.20123 0.87885 0.82180 0.80838 1.90748 1.14683 1.72563 1.63807 1.45931 1.12462 1.28829 1.46625 1.20296 0.91265 0.88886 0.94628 1.19432 0.98344 0.96042 0.92700 1.21038 1.02412 0.93806 1.01319 1.21178 0.95165 0.99747 0.92784 1.21396 1.07343 0.98108 0.98397 1.19876 0.94025 0.94546 0.85581 1.83945 1.55868 1.48291 1.25768 1.21826 1.21408 1.00929 1.04713 0.87896 1.26598 0.99823 0.99809 0.95925 1.70190 1.43771 1.26513 1.15390 0.84584 0.76606 0.76456 0.78567 1.18787 1.19789 1.17549 1.20257 1.03932 0.99216 0.96573 0.92340 0.91012 0.92555 0.87385 0.88544 0.90984 0.91090 0.74091 0.74724 0.90370 0.87867 0.83117 0.83266 0.86134 0.91885 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.19 71.98 0.66 -0.60 16 2 C -0.14 -1.25 6.41 -10.79 -0.07 -1.32 16 3 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.17 -1.46 9.82 30.59 0.30 -1.15 16 5 C -0.18 -1.79 5.85 -10.79 -0.06 -1.85 16 6 H 0.12 1.05 8.04 -2.38 -0.02 1.03 16 7 C 0.15 2.23 5.04 86.38 0.44 2.67 16 8 N -0.68 -12.14 5.55 -464.42 -2.58 -14.72 16 9 C 0.51 12.28 7.89 87.27 0.69 12.96 16 10 O -0.54 -16.08 16.48 -3.25 -0.05 -16.13 16 11 C 0.51 13.00 7.89 87.27 0.69 13.69 16 12 O -0.54 -15.05 16.48 -3.25 -0.05 -15.10 16 13 N -0.69 -17.63 5.54 -468.14 -2.59 -20.23 16 14 C 0.17 4.41 5.80 85.63 0.50 4.91 16 15 C -0.06 -2.02 5.25 -19.89 -0.10 -2.13 16 16 C -0.17 -4.71 9.70 22.30 0.22 -4.50 16 17 C -0.07 -2.24 10.04 22.25 0.22 -2.01 16 18 C -0.23 -9.67 9.17 22.39 0.21 -9.47 16 19 C 0.11 5.32 6.65 22.58 0.15 5.47 16 20 O -0.23 -13.81 9.76 -22.70 -0.22 -14.03 16 21 C -0.41 -23.76 9.49 67.92 0.64 -23.12 16 22 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 23 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 24 N -0.92 -56.50 13.67 21.61 0.30 -56.21 16 25 Si 1.02 42.61 29.55 68.60 2.03 44.63 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 29 C -0.18 -7.38 9.64 22.39 0.22 -7.17 16 30 H 0.06 0.62 7.83 -2.39 -0.02 0.61 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.57 7.90 -2.39 -0.02 0.55 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.10 0.88 7.94 -2.39 -0.02 0.86 16 35 H 0.07 1.14 7.88 -2.38 -0.02 1.12 16 36 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 37 H 0.42 6.18 7.87 -92.71 -0.73 5.45 16 38 H 0.42 10.99 7.94 -92.71 -0.74 10.25 16 39 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 41 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 44 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -73.32 388.74 1.55 -71.77 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.43 Total: 34.52 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 5.16 Total: -14.50 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -4.88 Total: -91.16 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.33 Total: -45.26 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.32 1.55 -71.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.271 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds