Wall clock time and date at job start Tue Mar 31 2020 17:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.55864 * 2 1 4 4 C 1.53000 * 117.50170 * 145.68355 * 2 1 3 5 5 C 1.52997 * 117.50391 * 214.30866 * 2 1 3 6 6 H 1.09002 * 117.51362 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50268 * 145.02246 * 5 2 1 8 8 N 1.46503 * 109.47206 * 185.01403 * 7 5 2 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 5 10 10 O 1.21349 * 119.99624 * 0.27166 * 9 8 7 11 11 C 1.49453 * 120.00502 * 180.02562 * 9 8 7 12 12 O 1.21347 * 119.99376 * 359.97438 * 11 9 8 13 13 N 1.34768 * 120.00135 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99899 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47100 * 179.97438 * 14 13 11 16 16 C 1.38320 * 119.96647 * 269.72028 * 15 14 13 17 17 C 1.38277 * 120.13834 * 179.76714 * 16 15 14 18 18 C 1.38118 * 120.07148 * 0.50983 * 17 16 15 19 19 C 1.38862 * 119.92617 * 359.74833 * 18 17 16 20 20 O 1.35750 * 120.06406 * 179.97438 * 19 18 17 21 21 C 1.34827 * 117.00616 * 354.48215 * 20 19 18 22 22 H 1.08008 * 119.99468 * 5.06605 * 21 20 19 23 23 C 1.38652 * 120.00647 * 185.05631 * 21 20 19 24 24 N 1.31558 * 119.99825 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47276 * 60.00609 * 25 23 21 27 27 H 1.48505 * 109.47095 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47565 * 300.00276 * 25 23 21 29 29 C 1.38078 * 119.96353 * 90.00003 * 15 14 13 30 30 H 1.09000 * 109.47004 * 205.69427 * 1 2 3 31 31 H 1.08999 * 109.47071 * 325.69210 * 1 2 3 32 32 H 1.09000 * 109.47011 * 85.69421 * 1 2 3 33 33 H 1.08999 * 117.49629 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.51939 * 214.97565 * 4 2 1 35 35 H 1.08994 * 109.47209 * 65.00988 * 7 5 2 36 36 H 1.09001 * 109.46674 * 305.00785 * 7 5 2 37 37 H 0.97005 * 119.99902 * 0.02562 * 8 7 5 38 38 H 0.97005 * 120.00200 * 359.97438 * 13 11 9 39 39 H 1.08993 * 109.46951 * 299.99573 * 14 13 11 40 40 H 1.09002 * 109.47224 * 59.99963 * 14 13 11 41 41 H 1.08004 * 119.93240 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.96658 * 180.26102 * 17 16 15 43 43 H 1.08003 * 120.03844 * 179.76704 * 18 17 16 44 44 H 0.96995 * 120.00251 * 180.02562 * 24 23 21 45 45 H 1.08000 * 120.03930 * 359.95516 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2365 -1.1209 -0.7649 6 1 1.6116 -1.8589 -1.2679 7 6 3.5491 -0.7759 -1.4713 8 7 4.0085 -1.9345 -2.2413 9 6 5.1527 -1.8621 -2.9497 10 8 5.8050 -0.8389 -2.9458 11 6 5.6211 -3.0438 -3.7357 12 8 4.9714 -4.0687 -3.7356 13 7 6.7656 -2.9716 -4.4437 14 6 7.2250 -4.1301 -5.2137 15 6 8.5182 -3.7905 -5.9089 16 6 8.4969 -3.2508 -7.1823 17 6 9.6812 -2.9334 -7.8217 18 6 10.8898 -3.1642 -7.1943 19 6 10.9147 -3.7108 -5.9181 20 8 12.1010 -3.9394 -5.2991 21 6 13.2195 -3.7212 -6.0196 22 1 13.1490 -3.3025 -7.0127 23 6 14.4603 -4.0340 -5.4857 24 7 14.5462 -4.5442 -4.2761 25 14 16.0099 -3.7310 -6.4837 26 1 16.1139 -2.2860 -6.8101 27 1 17.1967 -4.1461 -5.6935 28 1 15.9512 -4.5194 -7.7408 29 6 9.7232 -4.0237 -5.2764 30 1 -0.3633 -0.9261 0.4456 31 1 -0.3633 0.8489 0.5792 32 1 -0.3633 0.0772 -1.0248 33 1 1.6113 -1.8581 1.2688 34 1 3.1716 -0.8754 1.2684 35 1 4.3022 -0.5109 -0.7293 36 1 3.3891 0.0669 -2.1437 37 1 3.4891 -2.7538 -2.2412 38 1 7.2852 -2.1524 -4.4435 39 1 7.3841 -4.9732 -4.5415 40 1 6.4722 -4.3946 -5.9563 41 1 7.5532 -3.0731 -7.6767 42 1 9.6612 -2.5082 -8.8143 43 1 11.8146 -2.9195 -7.6957 44 1 15.4142 -4.7628 -3.9024 45 1 9.7393 -4.4487 -4.2836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117084582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:40 Heat of formation + Delta-G solvation = -54.008011 kcal Electronic energy + Delta-G solvation = -26368.906912 eV Core-core repulsion = 22352.848605 eV Total energy + Delta-G solvation = -4016.058308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.73834 -39.30208 -38.84654 -38.16621 -36.86592 -35.20475 -34.27158 -32.34490 -30.91451 -29.73251 -29.19128 -27.51739 -26.24983 -25.25609 -23.42992 -21.74697 -21.66539 -21.20936 -20.86926 -20.23958 -18.81036 -17.64571 -17.08669 -16.93951 -16.26875 -16.01674 -15.55385 -15.28405 -14.99126 -14.81244 -14.67902 -14.41135 -14.20303 -13.88416 -13.65198 -13.60015 -13.50204 -13.22043 -12.73385 -12.68348 -12.46821 -12.21374 -11.92289 -11.84851 -11.79101 -11.69373 -11.37994 -10.94047 -10.85782 -10.73709 -10.59112 -10.50380 -10.45772 -9.72677 -9.47168 -9.42794 -9.21038 -8.89432 -8.27884 -7.34719 -6.49487 -4.09154 1.33439 1.76883 2.23590 2.39215 3.10684 3.11440 3.12614 3.14696 3.21210 3.62444 3.92341 4.08681 4.31845 4.33781 4.46142 4.54728 4.71667 4.83980 4.86692 5.05133 5.06176 5.20415 5.27891 5.30162 5.34360 5.37133 5.48813 5.56415 5.65554 5.66777 5.75703 5.80821 5.84149 5.97155 6.04771 6.19237 6.23492 6.52099 6.78991 6.82272 6.97341 7.14172 7.24355 7.29422 7.34366 7.63705 7.68655 7.91604 7.94264 8.95559 9.63692 10.68079 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.065560 B =15766.857135 C =16450.383461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.171 4.171 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.149 3.851 8 N -0.701 5.701 9 C 0.507 3.493 10 O -0.516 6.516 11 C 0.505 3.495 12 O -0.528 6.528 13 N -0.686 5.686 14 C 0.166 3.834 15 C -0.078 4.078 16 C -0.193 4.193 17 C -0.076 4.076 18 C -0.223 4.223 19 C 0.150 3.850 20 O -0.175 6.175 21 C -0.394 4.394 22 H 0.092 0.908 23 C 0.040 3.960 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.269 1.269 29 C -0.168 4.168 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.757 6.600 4.689 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.355 5.355 9 C 0.288 3.712 10 O -0.391 6.391 11 C 0.285 3.715 12 O -0.405 6.405 13 N -0.339 5.339 14 C 0.044 3.956 15 C -0.078 4.078 16 C -0.213 4.213 17 C -0.094 4.094 18 C -0.243 4.243 19 C 0.096 3.904 20 O -0.078 6.078 21 C -0.470 4.470 22 H 0.109 0.891 23 C -0.164 4.164 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.188 4.188 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.253 0.747 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.478 6.440 5.090 24.872 hybrid contribution 0.889 0.154 -0.576 1.070 sum -22.589 6.594 4.514 23.961 Atomic orbital electron populations 1.21383 0.92470 1.02169 1.02105 1.22400 0.95510 0.94650 1.03620 0.87405 1.23290 1.02916 1.01332 0.93271 1.22563 0.98330 1.03318 0.94632 0.86901 1.21003 0.93777 0.87951 0.94691 1.45717 1.24140 1.17528 1.48099 1.20234 0.81812 0.88469 0.80702 1.90794 1.54788 1.31217 1.62329 1.20012 0.82374 0.88083 0.81044 1.90752 1.55551 1.31064 1.63137 1.45988 1.23047 1.18075 1.46750 1.20316 0.93463 0.87442 0.94369 1.19195 0.92507 1.01229 0.94900 1.20476 0.97455 1.07592 0.95751 1.20745 0.92150 0.97954 0.98546 1.21257 0.98568 1.07631 0.96845 1.19313 0.87460 0.92702 0.90924 1.83979 1.10573 1.74839 1.38456 1.21282 0.81945 1.43733 1.00066 0.89060 1.25297 0.98502 0.96155 0.96474 1.70025 1.25792 1.39168 1.14496 0.85771 0.79527 0.79097 0.78988 1.19470 1.20240 1.19458 1.20084 0.89660 1.07962 1.01118 0.92416 0.91905 0.92007 0.88431 0.88376 0.90665 0.90489 0.75027 0.74706 0.90149 0.90251 0.87415 0.87187 0.85393 0.91879 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.19 37.16 0.38 -0.17 16 2 C -0.14 -0.76 6.13 -90.62 -0.56 -1.31 16 3 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.17 -0.94 9.82 -26.73 -0.26 -1.20 16 5 C -0.17 -1.00 5.57 -90.62 -0.50 -1.51 16 6 H 0.11 0.61 8.04 -51.93 -0.42 0.19 16 7 C 0.15 1.17 5.96 -4.04 -0.02 1.15 16 8 N -0.70 -6.64 5.55 -60.73 -0.34 -6.97 16 9 C 0.51 6.38 7.89 -11.59 -0.09 6.28 16 10 O -0.52 -7.73 16.48 5.50 0.09 -7.64 16 11 C 0.50 6.85 7.89 -11.59 -0.09 6.76 16 12 O -0.53 -7.89 16.48 5.50 0.09 -7.80 16 13 N -0.69 -9.42 5.54 -61.91 -0.34 -9.76 16 14 C 0.17 2.35 5.80 -5.19 -0.03 2.32 16 15 C -0.08 -1.30 5.25 -104.65 -0.55 -1.85 16 16 C -0.19 -3.14 9.70 -39.54 -0.38 -3.52 16 17 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 18 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 19 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 20 O -0.18 -4.90 9.76 0.06 0.00 -4.90 16 21 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 22 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 24 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 25 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 29 C -0.17 -3.40 9.65 -39.40 -0.38 -3.78 16 30 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 35 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 3.39 7.87 -40.82 -0.32 3.07 16 38 H 0.42 5.75 7.94 -40.82 -0.32 5.43 16 39 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.67 5.64 -52.48 -0.30 2.38 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -31.69 390.77 -8.41 -40.10 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.22 Total: 9.93 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.32 Total: -9.85 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.08 Total: -40.91 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.18 Total: -20.34 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.69 -8.41 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds